Cow genome map
| Conread name: | Emb1-C0005194_P05 |
| Conread position: | 1-339 |
| Cow position: | chr3:39326298-39326630 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 129, 104 |
| Conread position: | 1-422 |
| Cow position: | chr3:3054219-3054629 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 381, 179 |
| Conread position: | 1-422 |
| Cow position: | chr3:5047577-5047153 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 34 |
| Conread position: | 1-422 |
| Cow position: | chr3:5954580-5954155 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 112, 246 |
| Conread position: | 3-422 |
| Cow position: | chr3:31354644-31354234 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 374, 31 |
| Conread position: | 4-419 |
| Cow position: | chr3:14634489-14634084 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 372, 97 |
| Conread position: | 4-422 |
| Cow position: | chr3:3979998-3980421 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 114 |
| Conread position: | 4-422 |
| Cow position: | chr3:64358554-64358139 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 136, 82 |
| Conread position: | 5-241 |
| Cow position: | chr3:49545562-49545328 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 174 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 195, 0 |
| Conread position: | 5-243 |
| Cow position: | chr3:49677373-49677610 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 100, 47 |
| Conread position: | 5-289 |
| Cow position: | chr3:56650654-56650372 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 95 |
| Conread position: | 5-353 |
| Cow position: | chr3:47273355-47273033 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 250 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 194, 121 |
| Conread position: | 5-408 |
| Cow position: | chr3:69933008-69933411 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 108, 181 |
| Conread position: | 5-420 |
| Cow position: | chr3:57485111-57484700 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 108, 11 |
| Conread position: | 5-421 |
| Cow position: | chr3:42630623-42631044 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 238 |
| Conread position: | 5-422 |
| Cow position: | chr3:594200-594606 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 194, 103 |
| Conread position: | 5-422 |
| Cow position: | chr3:2711347-2710930 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 108, 132 |
| Conread position: | 5-422 |
| Cow position: | chr3:5830018-5829597 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 242 |
| Conread position: | 5-422 |
| Cow position: | chr3:5883151-5883570 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 108, 202 |
| Conread position: | 5-422 |
| Cow position: | chr3:9716422-9716845 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 108, 244 |
| Conread position: | 5-422 |
| Cow position: | chr3:10239263-10239680 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 194, 135 |
| Conread position: | 5-422 |
| Cow position: | chr3:18542797-18542377 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 108, 198 |
| Conread position: | 5-422 |
| Cow position: | chr3:18811114-18811534 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 105, 94 |
| Conread position: | 5-422 |
| Cow position: | chr3:19757349-19756928 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 203 |
| Conread position: | 5-422 |
| Cow position: | chr3:21183071-21182653 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 194, 199 |
| Conread position: | 5-422 |
| Cow position: | chr3:23291794-23291376 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 101, 177 |
| Conread position: | 5-422 |
| Cow position: | chr3:31898361-31897946 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 19 |
| Conread position: | 5-422 |
| Cow position: | chr3:34031286-34030868 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 108, 180 |
| Conread position: | 5-422 |
| Cow position: | chr3:36882301-36881891 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 372, 178 |
| Conread position: | 5-422 |
| Cow position: | chr3:40822999-40823418 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 108, 198 |
| Conread position: | 5-422 |
| Cow position: | chr3:42580354-42579936 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 158 |
| Conread position: | 5-422 |
| Cow position: | chr3:48061211-48060801 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 108, 27 |
| Conread position: | 5-422 |
| Cow position: | chr3:59860976-59861397 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 96, 202 |
| Conread position: | 5-422 |
| Cow position: | chr3:64017753-64017333 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 108, 198 |
| Conread position: | 5-422 |
| Cow position: | chr3:70084032-70083621 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 108, 71 |
| Conread position: | 5-422 |
| Cow position: | chr3:72629682-72630100 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 194, 199 |
| Conread position: | 5-422 |
| Cow position: | chr3:78027800-78027379 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 101, 202 |
| Conread position: | 6-242 |
| Cow position: | chr3:52865133-52864899 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 182 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 102, 10 |
| Conread position: | 6-422 |
| Cow position: | chr3:19943680-19944088 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 105, 42 |
| Conread position: | 8-420 |
| Cow position: | chr3:50914919-50915333 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 26 |
| Conread position: | 9-422 |
| Cow position: | chr3:6685074-6685492 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 187 |
| Conread position: | 16-422 |
| Cow position: | chr3:48231359-48230980 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 17-333 |
| Cow position: | chr3:17951983-17952304 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 231 |
| Conread position: | 20-420 |
| Cow position: | chr3:34396433-34396052 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 290 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 16, 69 |
| Conread position: | 28-293 |
| Cow position: | chr3:2909455-2909194 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 185 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 85, 20 |
| Conread position: | 28-420 |
| Cow position: | chr3:75041529-75041139 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 171, 85 |
| Conread position: | 30-422 |
| Cow position: | chr3:18463940-18463556 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 347, 65 |
| Conread position: | 47-410 |
| Cow position: | chr3:3806012-3806358 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 330, 66 |
| Conread position: | 51-421 |
| Cow position: | chr3:66638396-66638770 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 196 |
| Conread position: | 76-316 |
| Cow position: | chr3:57900895-57901139 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 185 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 11, 172 |
| Conread position: | 130-422 |
| Cow position: | chr3:53515358-53515644 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 11 |
| Conread position: | 154-422 |
| Cow position: | chr3:19802422-19802690 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 203 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 223, 90 |
Show alignments to all cow chromosomes.