Cow genome map
| Conread name: | Liv1-LVRM10074H11 |
| Conread position: | 4-198 |
| Cow position: | chr3:47087602-47087404 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 18, 10 |
| Conread position: | 258-716 |
| Cow position: | chr3:63176748-63177223 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 110 |
| Conread position: | 259-711 |
| Cow position: | chr3:37009339-37008882 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 14 |
| Conread position: | 261-705 |
| Cow position: | chr3:35884707-35884252 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 42 |
| Conread position: | 261-705 |
| Cow position: | chr3:36874651-36874192 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 118 |
| Conread position: | 261-711 |
| Cow position: | chr3:11784769-11785226 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 159 |
| Conread position: | 261-711 |
| Cow position: | chr3:31422712-31422239 (view UCSC Genome Browser custom track) |
| Alignm length: | 479 |
| Alignm identity: | 320 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 25, 71 |
| Conread position: | 261-711 |
| Cow position: | chr3:56644921-56644455 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 261-711 |
| Cow position: | chr3:59864889-59865355 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 410 |
| Conread position: | 261-739 |
| Cow position: | chr3:4031157-4031651 (view UCSC Genome Browser custom track) |
| Alignm length: | 496 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 297 |
| Conread position: | 264-711 |
| Cow position: | chr3:18246170-18245709 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 164, 68 |
| Conread position: | 264-711 |
| Cow position: | chr3:64376303-64375844 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 92 |
| Conread position: | 266-705 |
| Cow position: | chr3:73936786-73936324 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 175, 291 |
| Conread position: | 268-711 |
| Cow position: | chr3:579591-580055 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 168, 20 |
| Conread position: | 268-711 |
| Cow position: | chr3:46683251-46683709 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 168, 188 |
| Conread position: | 269-706 |
| Cow position: | chr3:19108980-19109440 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 244 |
| Conread position: | 269-711 |
| Cow position: | chr3:34392866-34392415 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 168, 288 |
| Conread position: | 269-741 |
| Cow position: | chr3:15557201-15557700 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 177, 0 |
| Conread position: | 270-705 |
| Cow position: | chr3:17937596-17937150 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 127, 42 |
| Conread position: | 273-707 |
| Cow position: | chr3:38863117-38863546 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 92 |
| Conread position: | 273-712 |
| Cow position: | chr3:38346456-38346911 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 287 |
| Conread position: | 286-702 |
| Cow position: | chr3:33469230-33468802 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 56 |
| Conread position: | 287-692 |
| Cow position: | chr3:11819227-11819648 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 148, 124 |
| Conread position: | 287-711 |
| Cow position: | chr3:13248584-13248145 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 149, 270 |
| Conread position: | 287-711 |
| Cow position: | chr3:33269051-33268617 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 291 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 150, 50 |
| Conread position: | 287-711 |
| Cow position: | chr3:69930400-69929963 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 149, 308 |
| Conread position: | 293-711 |
| Cow position: | chr3:1483465-1483897 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 152, 18 |
| Conread position: | 293-720 |
| Cow position: | chr3:34556946-34556506 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 143, 27 |
| Conread position: | 295-710 |
| Cow position: | chr3:63202674-63203102 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 287 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 107, 152 |
| Conread position: | 304-702 |
| Cow position: | chr3:20452764-20453165 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 269 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 90, 10 |
| Conread position: | 307-711 |
| Cow position: | chr3:26474441-26474864 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 26 |
| Conread position: | 312-711 |
| Cow position: | chr3:18670481-18670898 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 128, 233 |
| Conread position: | 325-711 |
| Cow position: | chr3:30179389-30179791 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 270 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 111, 232 |
| Conread position: | 333-711 |
| Cow position: | chr3:18917417-18917807 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 263 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 109, 161 |
| Conread position: | 352-686 |
| Cow position: | chr3:60891965-60892313 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 242 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 84, 205 |
| Conread position: | 362-711 |
| Cow position: | chr3:40568681-40568318 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 250 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 74, 307 |
| Conread position: | 366-705 |
| Cow position: | chr3:524481-524829 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 236 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 70, 23 |
| Conread position: | 366-705 |
| Cow position: | chr3:55272678-55272339 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 229 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 70, 32 |
| Conread position: | 366-711 |
| Cow position: | chr3:56976639-56976280 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 242 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 62, 181 |
| Conread position: | 374-711 |
| Cow position: | chr3:15685545-15685203 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 240 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 63, 134 |
| Conread position: | 388-706 |
| Cow position: | chr3:47758246-47758578 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 231 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 48, 169 |
| Conread position: | 399-721 |
| Cow position: | chr3:77496195-77496533 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 226 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 37, 122 |
| Conread position: | 413-704 |
| Cow position: | chr3:68155875-68156181 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 206 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 413-711 |
| Cow position: | chr3:495889-495577 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 208 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 23, 134 |
| Conread position: | 413-718 |
| Cow position: | chr3:19794125-19793805 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 212 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 15, 119 |
| Conread position: | 429-703 |
| Cow position: | chr3:7562549-7562263 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 203 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 18, 95 |
| Conread position: | 429-711 |
| Cow position: | chr3:25011713-25012007 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 194 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 440-711 |
| Cow position: | chr3:8240352-8240635 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 191 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 25, 114 |
| Conread position: | 457-711 |
| Cow position: | chr3:20225599-20225863 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 176 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 102, 95 |
| Conread position: | 462-711 |
| Cow position: | chr3:47987079-47987338 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 97, 90 |
| Conread position: | 478-706 |
| Cow position: | chr3:50768139-50768377 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 164 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 81, 74 |
| Conread position: | 478-711 |
| Cow position: | chr3:7280290-7280533 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 170 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 72, 81 |
| Conread position: | 481-722 |
| Cow position: | chr3:45647123-45647374 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 174 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 84, 71 |
| Conread position: | 483-711 |
| Cow position: | chr3:49218838-49218600 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 117, 6 |
| Conread position: | 569-738 |
| Cow position: | chr3:54570191-54570364 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 128 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 49, 0 |
Show alignments to all cow chromosomes.