Cow genome map
| Conread name: | Liv1-LVRM10139G05 |
| Conread position: | 174-361 |
| Cow position: | chr1:6971421-6971237 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 138 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 99, 31 |
| Conread position: | 178-390 |
| Cow position: | chr1:93430074-93429856 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 163 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 23, 85 |
| Conread position: | 188-342 |
| Cow position: | chr1:96313581-96313429 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 114 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 17, 71 |
| Conread position: | 189-390 |
| Cow position: | chr1:101656922-101657122 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 155 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 83, 65 |
| Conread position: | 189-394 |
| Cow position: | chr1:60452145-60452351 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 83, 67 |
| Conread position: | 190-366 |
| Cow position: | chr1:90978512-90978336 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 134 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 20, 141 |
| Conread position: | 194-356 |
| Cow position: | chr1:24684693-24684538 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 194-387 |
| Cow position: | chr1:17467272-17467468 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 141 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 66, 131 |
| Conread position: | 197-354 |
| Cow position: | chr1:57220717-57220566 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 119 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 197-381 |
| Cow position: | chr1:29005275-29005094 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 132 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 197-387 |
| Cow position: | chr1:89938864-89939053 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 8, 63 |
| Conread position: | 197-394 |
| Cow position: | chr1:79931435-79931238 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 148 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 177, 19 |
| Conread position: | 197-394 |
| Cow position: | chr1:93128873-93129072 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 149 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 75, 59 |
| Conread position: | 198-331 |
| Cow position: | chr1:31116820-31116952 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 103 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 74, 58 |
| Conread position: | 198-354 |
| Cow position: | chr1:6309660-6309511 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 121 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 198-354 |
| Cow position: | chr1:67902501-67902351 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 118 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 198-359 |
| Cow position: | chr1:91981171-91981014 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 124 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 7, 56 |
| Conread position: | 198-368 |
| Cow position: | chr1:22605370-22605532 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 140 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 74, 60 |
| Conread position: | 198-368 |
| Cow position: | chr1:102334939-102334773 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 126 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 134, 49 |
| Conread position: | 198-371 |
| Cow position: | chr1:102311073-102310895 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 133 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 74, 59 |
| Conread position: | 198-372 |
| Cow position: | chr1:24230095-24229925 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 74, 42 |
| Conread position: | 198-387 |
| Cow position: | chr1:28470107-28469919 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 175, 45 |
| Conread position: | 198-388 |
| Cow position: | chr1:93438717-93438914 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 145 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 73, 59 |
| Conread position: | 198-389 |
| Cow position: | chr1:47636440-47636252 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 75, 42 |
| Conread position: | 198-390 |
| Cow position: | chr1:11056018-11056212 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 152 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 7, 110 |
| Conread position: | 198-390 |
| Cow position: | chr1:93571373-93571563 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 176, 16 |
| Conread position: | 201-332 |
| Cow position: | chr1:97478241-97478111 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 103 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 71, 21 |
| Conread position: | 202-357 |
| Cow position: | chr1:22590350-22590500 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 117 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 202-385 |
| Cow position: | chr1:81468843-81469021 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 70, 15 |
| Conread position: | 204-365 |
| Cow position: | chr1:5762238-5762400 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 122 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 15, 54 |
| Conread position: | 204-380 |
| Cow position: | chr1:63199495-63199321 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 131 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 102, 0 |
| Conread position: | 204-394 |
| Cow position: | chr1:80187620-80187430 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 68, 53 |
| Conread position: | 204-394 |
| Cow position: | chr1:82420189-82420378 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 117, 49 |
| Conread position: | 206-332 |
| Cow position: | chr1:44128526-44128652 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 101 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 66, 51 |
| Conread position: | 206-352 |
| Cow position: | chr1:102311831-102311683 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 113 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 66, 58 |
| Conread position: | 206-356 |
| Cow position: | chr1:3103507-3103357 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 120 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 66, 51 |
| Conread position: | 206-366 |
| Cow position: | chr1:60453804-60453647 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 11, 28 |
| Conread position: | 207-381 |
| Cow position: | chr1:80192810-80192987 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 65, 48 |
| Conread position: | 207-389 |
| Cow position: | chr1:93579651-93579829 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 137 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 64, 28 |
| Conread position: | 207-390 |
| Cow position: | chr1:15263785-15263966 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 148, 49 |
| Conread position: | 207-390 |
| Cow position: | chr1:90072776-90072961 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 133 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 9, 100 |
| Conread position: | 207-394 |
| Cow position: | chr1:46283257-46283453 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 146 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 75, 29 |
| Conread position: | 207-394 |
| Cow position: | chr1:89399281-89399091 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 138 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 12, 50 |
| Conread position: | 207-407 |
| Cow position: | chr1:31114001-31114205 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 113, 50 |
| Conread position: | 208-322 |
| Cow position: | chr1:70257131-70257017 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 99 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 64, 47 |
| Conread position: | 208-354 |
| Cow position: | chr1:92056616-92056467 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 117 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 9, 51 |
| Conread position: | 208-366 |
| Cow position: | chr1:2530111-2529954 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 120 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 64, 49 |
| Conread position: | 208-381 |
| Cow position: | chr1:16984449-16984277 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 64, 49 |
| Conread position: | 208-386 |
| Cow position: | chr1:8692755-8692931 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 135 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 61, 48 |
| Conread position: | 209-344 |
| Cow position: | chr1:14383521-14383388 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 107 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 63, 55 |
| Conread position: | 209-364 |
| Cow position: | chr1:60785540-60785692 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 114 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 209-388 |
| Cow position: | chr1:40872281-40872461 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 63, 47 |
| Conread position: | 209-398 |
| Cow position: | chr1:90862431-90862242 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 145 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 63, 48 |
| Conread position: | 210-394 |
| Cow position: | chr1:4269637-4269451 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 137 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 62, 47 |
| Conread position: | 210-395 |
| Cow position: | chr1:76660183-76660369 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 164, 96 |
| Conread position: | 225-397 |
| Cow position: | chr1:89093920-89093749 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 47, 32 |
| Conread position: | 229-394 |
| Cow position: | chr1:81225331-81225494 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 124 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 144, 20 |
| Conread position: | 230-394 |
| Cow position: | chr1:44033898-44033735 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 131 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 42, 27 |
| Conread position: | 238-394 |
| Cow position: | chr1:90971615-90971773 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 124 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 34, 18 |
| Conread position: | 239-368 |
| Cow position: | chr1:70310161-70310032 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 105 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 94, 25 |
Show alignments to all cow chromosomes.