Cow genome map
| Conread name: | Liv1-LVRM1D010191 |
| Conread position: | 1-171 |
| Cow position: | chr11:10091227-10091400 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 141 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 1-182 |
| Cow position: | chr11:44491684-44491503 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 137 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 37, 77 |
| Conread position: | 1-221 |
| Cow position: | chr11:71981979-71981745 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 35, 114 |
| Conread position: | 1-284 |
| Cow position: | chr11:12094116-12094399 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 73 |
| Conread position: | 1-476 |
| Cow position: | chr11:37476452-37475950 (view UCSC Genome Browser custom track) |
| Alignm length: | 505 |
| Alignm identity: | 363 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 157 |
| Conread position: | 1-551 |
| Cow position: | chr11:31861449-31862018 (view UCSC Genome Browser custom track) |
| Alignm length: | 578 |
| Alignm identity: | 441 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 178, 519 |
| Conread position: | 1-552 |
| Cow position: | chr11:15535034-15535569 (view UCSC Genome Browser custom track) |
| Alignm length: | 559 |
| Alignm identity: | 347 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 197, 5 |
| Conread position: | 1-552 |
| Cow position: | chr11:24393864-24394423 (view UCSC Genome Browser custom track) |
| Alignm length: | 565 |
| Alignm identity: | 423 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 145 |
| Conread position: | 1-552 |
| Cow position: | chr11:26070510-26069938 (view UCSC Genome Browser custom track) |
| Alignm length: | 585 |
| Alignm identity: | 429 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 280 |
| Conread position: | 1-552 |
| Cow position: | chr11:30123298-30122737 (view UCSC Genome Browser custom track) |
| Alignm length: | 570 |
| Alignm identity: | 436 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 238 |
| Conread position: | 1-552 |
| Cow position: | chr11:47759735-47759172 (view UCSC Genome Browser custom track) |
| Alignm length: | 569 |
| Alignm identity: | 445 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 300 |
| Conread position: | 2-267 |
| Cow position: | chr11:9216532-9216266 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 208 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 66 |
| Conread position: | 3-213 |
| Cow position: | chr11:10052253-10052453 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 155 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 35, 56 |
| Conread position: | 3-260 |
| Cow position: | chr11:21902544-21902291 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 199 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 66 |
| Conread position: | 3-356 |
| Cow position: | chr11:38219785-38219428 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 173 |
| Conread position: | 3-442 |
| Cow position: | chr11:49840406-49840853 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 286 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 33, 98 |
| Conread position: | 3-498 |
| Cow position: | chr11:28108687-28109191 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 380 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 188 |
| Conread position: | 3-536 |
| Cow position: | chr11:29232459-29231927 (view UCSC Genome Browser custom track) |
| Alignm length: | 547 |
| Alignm identity: | 367 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 69 |
| Conread position: | 3-545 |
| Cow position: | chr11:31926721-31927251 (view UCSC Genome Browser custom track) |
| Alignm length: | 547 |
| Alignm identity: | 385 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 13 |
| Conread position: | 3-549 |
| Cow position: | chr11:40775461-40774893 (view UCSC Genome Browser custom track) |
| Alignm length: | 572 |
| Alignm identity: | 433 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 323 |
| Conread position: | 3-551 |
| Cow position: | chr11:7110552-7110024 (view UCSC Genome Browser custom track) |
| Alignm length: | 552 |
| Alignm identity: | 394 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 26 |
| Conread position: | 3-552 |
| Cow position: | chr11:9601782-9601219 (view UCSC Genome Browser custom track) |
| Alignm length: | 576 |
| Alignm identity: | 419 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 122 |
| Conread position: | 3-552 |
| Cow position: | chr11:17546713-17547271 (view UCSC Genome Browser custom track) |
| Alignm length: | 562 |
| Alignm identity: | 413 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 191 |
| Conread position: | 3-552 |
| Cow position: | chr11:26564532-26563992 (view UCSC Genome Browser custom track) |
| Alignm length: | 559 |
| Alignm identity: | 380 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 31 |
| Conread position: | 3-552 |
| Cow position: | chr11:28229205-28228660 (view UCSC Genome Browser custom track) |
| Alignm length: | 561 |
| Alignm identity: | 405 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 63 |
| Conread position: | 3-552 |
| Cow position: | chr11:57627508-57626944 (view UCSC Genome Browser custom track) |
| Alignm length: | 565 |
| Alignm identity: | 403 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 3-552 |
| Cow position: | chr11:67451045-67451600 (view UCSC Genome Browser custom track) |
| Alignm length: | 562 |
| Alignm identity: | 404 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 47 |
| Conread position: | 4-549 |
| Cow position: | chr11:53286613-53286065 (view UCSC Genome Browser custom track) |
| Alignm length: | 565 |
| Alignm identity: | 391 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 119 |
| Conread position: | 5-552 |
| Cow position: | chr11:4063313-4062781 (view UCSC Genome Browser custom track) |
| Alignm length: | 553 |
| Alignm identity: | 408 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 125 |
| Conread position: | 5-552 |
| Cow position: | chr11:4269850-4269293 (view UCSC Genome Browser custom track) |
| Alignm length: | 560 |
| Alignm identity: | 428 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 191 |
| Conread position: | 5-552 |
| Cow position: | chr11:9156605-9156043 (view UCSC Genome Browser custom track) |
| Alignm length: | 568 |
| Alignm identity: | 427 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 443 |
| Conread position: | 5-552 |
| Cow position: | chr11:38834883-38834340 (view UCSC Genome Browser custom track) |
| Alignm length: | 561 |
| Alignm identity: | 423 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 191 |
| Conread position: | 6-523 |
| Cow position: | chr11:43514079-43513556 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 407 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 190 |
| Conread position: | 6-525 |
| Cow position: | chr11:4034796-4034271 (view UCSC Genome Browser custom track) |
| Alignm length: | 534 |
| Alignm identity: | 396 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 318 |
| Conread position: | 6-549 |
| Cow position: | chr11:26124373-26123825 (view UCSC Genome Browser custom track) |
| Alignm length: | 555 |
| Alignm identity: | 426 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 178 |
| Conread position: | 6-550 |
| Cow position: | chr11:53431505-53430936 (view UCSC Genome Browser custom track) |
| Alignm length: | 573 |
| Alignm identity: | 426 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 482 |
| Conread position: | 6-552 |
| Cow position: | chr11:11988665-11989241 (view UCSC Genome Browser custom track) |
| Alignm length: | 580 |
| Alignm identity: | 439 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 296 |
| Conread position: | 6-552 |
| Cow position: | chr11:12357863-12357303 (view UCSC Genome Browser custom track) |
| Alignm length: | 563 |
| Alignm identity: | 427 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 191 |
| Conread position: | 6-552 |
| Cow position: | chr11:19101942-19101385 (view UCSC Genome Browser custom track) |
| Alignm length: | 567 |
| Alignm identity: | 418 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 190 |
| Conread position: | 6-552 |
| Cow position: | chr11:26548064-26548633 (view UCSC Genome Browser custom track) |
| Alignm length: | 574 |
| Alignm identity: | 426 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 237 |
| Conread position: | 6-552 |
| Cow position: | chr11:28054056-28053534 (view UCSC Genome Browser custom track) |
| Alignm length: | 553 |
| Alignm identity: | 396 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 28 |
| Conread position: | 6-552 |
| Cow position: | chr11:29668054-29667498 (view UCSC Genome Browser custom track) |
| Alignm length: | 560 |
| Alignm identity: | 421 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 187 |
| Conread position: | 6-552 |
| Cow position: | chr11:41170142-41169588 (view UCSC Genome Browser custom track) |
| Alignm length: | 560 |
| Alignm identity: | 423 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 186 |
| Conread position: | 6-552 |
| Cow position: | chr11:44252353-44252911 (view UCSC Genome Browser custom track) |
| Alignm length: | 561 |
| Alignm identity: | 416 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 190, 41 |
| Conread position: | 6-552 |
| Cow position: | chr11:44582782-44582234 (view UCSC Genome Browser custom track) |
| Alignm length: | 559 |
| Alignm identity: | 413 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 190 |
| Conread position: | 6-552 |
| Cow position: | chr11:58134947-58135502 (view UCSC Genome Browser custom track) |
| Alignm length: | 561 |
| Alignm identity: | 425 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 386 |
| Conread position: | 6-552 |
| Cow position: | chr11:71330146-71330703 (view UCSC Genome Browser custom track) |
| Alignm length: | 560 |
| Alignm identity: | 423 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 138, 401 |
| Conread position: | 6-552 |
| Cow position: | chr11:85393258-85392726 (view UCSC Genome Browser custom track) |
| Alignm length: | 555 |
| Alignm identity: | 406 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 281, 175 |
| Conread position: | 8-387 |
| Cow position: | chr11:23127341-23126965 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 13 |
| Conread position: | 8-524 |
| Cow position: | chr11:44156692-44156170 (view UCSC Genome Browser custom track) |
| Alignm length: | 529 |
| Alignm identity: | 399 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 188 |
| Conread position: | 8-550 |
| Cow position: | chr11:49559113-49558587 (view UCSC Genome Browser custom track) |
| Alignm length: | 556 |
| Alignm identity: | 394 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 172, 11 |
| Conread position: | 9-551 |
| Cow position: | chr11:15943789-15943257 (view UCSC Genome Browser custom track) |
| Alignm length: | 554 |
| Alignm identity: | 357 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 23, 169 |
| Conread position: | 9-552 |
| Cow position: | chr11:10848007-10848560 (view UCSC Genome Browser custom track) |
| Alignm length: | 559 |
| Alignm identity: | 429 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 181 |
| Conread position: | 31-552 |
| Cow position: | chr11:20575802-20575290 (view UCSC Genome Browser custom track) |
| Alignm length: | 532 |
| Alignm identity: | 335 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 9, 126 |
| Conread position: | 39-294 |
| Cow position: | chr11:22935683-22935937 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 206 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 232, 149 |
| Conread position: | 39-536 |
| Cow position: | chr11:3855819-3856304 (view UCSC Genome Browser custom track) |
| Alignm length: | 511 |
| Alignm identity: | 378 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 152 |
| Conread position: | 39-552 |
| Cow position: | chr11:72310445-72309930 (view UCSC Genome Browser custom track) |
| Alignm length: | 522 |
| Alignm identity: | 395 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 232, 160 |
| Conread position: | 65-550 |
| Cow position: | chr11:49553560-49553074 (view UCSC Genome Browser custom track) |
| Alignm length: | 505 |
| Alignm identity: | 363 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 180 |
| Conread position: | 66-552 |
| Cow position: | chr11:74424203-74424704 (view UCSC Genome Browser custom track) |
| Alignm length: | 508 |
| Alignm identity: | 379 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 44 |
| Conread position: | 81-550 |
| Cow position: | chr11:39804370-39804829 (view UCSC Genome Browser custom track) |
| Alignm length: | 473 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 152, 99 |
| Conread position: | 84-419 |
| Cow position: | chr11:28064729-28065062 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 106 |
| Conread position: | 95-552 |
| Cow position: | chr11:9975237-9974796 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 283 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 49, 35 |
| Conread position: | 121-475 |
| Cow position: | chr11:81852038-81851694 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 176 |
| Conread position: | 135-552 |
| Cow position: | chr11:73133970-73134398 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 147-551 |
| Cow position: | chr11:66729792-66730193 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 124, 46 |
| Conread position: | 147-552 |
| Cow position: | chr11:87142285-87142684 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 123, 41 |
| Conread position: | 154-552 |
| Cow position: | chr11:4026903-4026500 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 34 |
| Conread position: | 155-552 |
| Cow position: | chr11:23880734-23881139 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 35 |
| Conread position: | 164-368 |
| Cow position: | chr11:31873904-31873705 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 162 |
| Alignm E-value: | 9e-38 |
| Alignm gaps (pig, cow): | 35, 10 |
| Conread position: | 167-540 |
| Cow position: | chr11:32685613-32685985 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 255 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 93, 32 |
| Conread position: | 180-552 |
| Cow position: | chr11:76373258-76372893 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 116 |
| Conread position: | 189-359 |
| Cow position: | chr11:27657039-27657213 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 141 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 201-324 |
| Cow position: | chr11:10056097-10056222 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 103 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 223-550 |
| Cow position: | chr11:35504432-35504105 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 218 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 153, 40 |
| Conread position: | 231-421 |
| Cow position: | chr11:44490834-44490647 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 156 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 40, 71 |
| Conread position: | 251-552 |
| Cow position: | chr11:28391769-28392073 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 221 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 22, 65 |
| Conread position: | 273-552 |
| Cow position: | chr11:26074141-26073858 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 217 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 24 |
| Conread position: | 301-552 |
| Cow position: | chr11:1495180-1494926 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 187 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 69, 137 |
| Conread position: | 324-552 |
| Cow position: | chr11:54216385-54216150 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 46, 189 |
| Conread position: | 329-549 |
| Cow position: | chr11:26784138-26784361 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 22, 105 |
| Conread position: | 340-552 |
| Cow position: | chr11:27657335-27657541 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 164 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 28, 87 |
| Conread position: | 368-552 |
| Cow position: | chr11:31754454-31754639 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 135 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 61, 54 |
| Conread position: | 375-552 |
| Cow position: | chr11:31932374-31932554 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 124, 105 |
| Conread position: | 375-552 |
| Cow position: | chr11:54484348-54484169 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 128 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 88, 0 |
Show alignments to all cow chromosomes.