Cow genome map

Conread name: Liv1-LVRM1D010191

Conread position: 1-135
Cow position: chr15:1300312-1300177 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 114
Alignm E-value: 9e-32
Alignm gaps (pig, cow): 35, 123

Conread position: 1-247
Cow position: chr15:32204110-32204347 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 192
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 37, 124

Conread position: 1-360
Cow position: chr15:2017062-2017416 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 123

Conread position: 1-514
Cow position: chr15:32720248-32719718 (view UCSC Genome Browser custom track)
Alignm length: 533
Alignm identity: 403
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 9

Conread position: 1-528
Cow position: chr15:35736282-35736813 (view UCSC Genome Browser custom track)
Alignm length: 542
Alignm identity: 399
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 192

Conread position: 1-552
Cow position: chr15:2925805-2926361 (view UCSC Genome Browser custom track)
Alignm length: 563
Alignm identity: 419
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 160

Conread position: 1-552
Cow position: chr15:4678781-4679313 (view UCSC Genome Browser custom track)
Alignm length: 564
Alignm identity: 414
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 15

Conread position: 1-552
Cow position: chr15:5980841-5981398 (view UCSC Genome Browser custom track)
Alignm length: 566
Alignm identity: 435
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 173

Conread position: 1-552
Cow position: chr15:6079247-6079794 (view UCSC Genome Browser custom track)
Alignm length: 558
Alignm identity: 426
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 154

Conread position: 1-552
Cow position: chr15:35647174-35646626 (view UCSC Genome Browser custom track)
Alignm length: 565
Alignm identity: 430
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 30

Conread position: 1-552
Cow position: chr15:36625777-36625222 (view UCSC Genome Browser custom track)
Alignm length: 572
Alignm identity: 427
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 16

Conread position: 2-544
Cow position: chr15:4962128-4962673 (view UCSC Genome Browser custom track)
Alignm length: 554
Alignm identity: 413
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 280

Conread position: 2-552
Cow position: chr15:51675211-51675766 (view UCSC Genome Browser custom track)
Alignm length: 570
Alignm identity: 426
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 192

Conread position: 3-188
Cow position: chr15:8057792-8057970 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 135
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 79, 0

Conread position: 3-235
Cow position: chr15:1658221-1657998 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 166
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 42, 23

Conread position: 3-240
Cow position: chr15:1668221-1668449 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 169
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 42, 23

Conread position: 3-454
Cow position: chr15:37457132-37457572 (view UCSC Genome Browser custom track)
Alignm length: 457
Alignm identity: 301
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 21, 15

Conread position: 3-503
Cow position: chr15:4142323-4141815 (view UCSC Genome Browser custom track)
Alignm length: 511
Alignm identity: 361
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 192

Conread position: 3-549
Cow position: chr15:1238174-1238731 (view UCSC Genome Browser custom track)
Alignm length: 572
Alignm identity: 414
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 73

Conread position: 3-549
Cow position: chr15:7545359-7545897 (view UCSC Genome Browser custom track)
Alignm length: 557
Alignm identity: 405
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 47

Conread position: 3-551
Cow position: chr15:4813095-4813649 (view UCSC Genome Browser custom track)
Alignm length: 561
Alignm identity: 388
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 13

Conread position: 3-552
Cow position: chr15:579931-580477 (view UCSC Genome Browser custom track)
Alignm length: 563
Alignm identity: 403
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 115

Conread position: 3-552
Cow position: chr15:3009358-3008790 (view UCSC Genome Browser custom track)
Alignm length: 572
Alignm identity: 408
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 165

Conread position: 3-552
Cow position: chr15:4671929-4672482 (view UCSC Genome Browser custom track)
Alignm length: 565
Alignm identity: 421
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 312

Conread position: 3-552
Cow position: chr15:21450158-21450734 (view UCSC Genome Browser custom track)
Alignm length: 581
Alignm identity: 429
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 80

Conread position: 3-552
Cow position: chr15:50123447-50122883 (view UCSC Genome Browser custom track)
Alignm length: 569
Alignm identity: 404
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 13

Conread position: 4-551
Cow position: chr15:36668243-36668769 (view UCSC Genome Browser custom track)
Alignm length: 555
Alignm identity: 414
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 193

Conread position: 4-552
Cow position: chr15:1764823-1765371 (view UCSC Genome Browser custom track)
Alignm length: 573
Alignm identity: 414
Alignm E-value: 0
Alignm gaps (pig, cow): 310, 35

Conread position: 5-550
Cow position: chr15:32711722-32712270 (view UCSC Genome Browser custom track)
Alignm length: 556
Alignm identity: 401
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 129

Conread position: 5-552
Cow position: chr15:9430440-9430985 (view UCSC Genome Browser custom track)
Alignm length: 566
Alignm identity: 403
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 29

Conread position: 5-552
Cow position: chr15:18577208-18577766 (view UCSC Genome Browser custom track)
Alignm length: 561
Alignm identity: 430
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 188

Conread position: 6-188
Cow position: chr15:44829299-44829484 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 142
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 32, 0

Conread position: 6-199
Cow position: chr15:32493886-32493693 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 155
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 190, 175

Conread position: 6-319
Cow position: chr15:44070426-44070742 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 147

Conread position: 6-322
Cow position: chr15:2901974-2901651 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 184, 75

Conread position: 6-413
Cow position: chr15:8811526-8811110 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 108

Conread position: 6-441
Cow position: chr15:524361-523929 (view UCSC Genome Browser custom track)
Alignm length: 444
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 190

Conread position: 6-488
Cow position: chr15:315358-314843 (view UCSC Genome Browser custom track)
Alignm length: 521
Alignm identity: 363
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 167

Conread position: 6-546
Cow position: chr15:4651855-4652415 (view UCSC Genome Browser custom track)
Alignm length: 569
Alignm identity: 409
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 23

Conread position: 6-551
Cow position: chr15:3260820-3260273 (view UCSC Genome Browser custom track)
Alignm length: 558
Alignm identity: 410
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 184

Conread position: 6-551
Cow position: chr15:18332331-18331785 (view UCSC Genome Browser custom track)
Alignm length: 555
Alignm identity: 411
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 190

Conread position: 6-552
Cow position: chr15:4386258-4386804 (view UCSC Genome Browser custom track)
Alignm length: 559
Alignm identity: 425
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 189

Conread position: 6-552
Cow position: chr15:4765675-4766240 (view UCSC Genome Browser custom track)
Alignm length: 569
Alignm identity: 401
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 296

Conread position: 6-552
Cow position: chr15:6155445-6154878 (view UCSC Genome Browser custom track)
Alignm length: 571
Alignm identity: 430
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 190

Conread position: 6-552
Cow position: chr15:6553323-6552767 (view UCSC Genome Browser custom track)
Alignm length: 571
Alignm identity: 412
Alignm E-value: 0
Alignm gaps (pig, cow): 184, 23

Conread position: 6-552
Cow position: chr15:7837748-7838317 (view UCSC Genome Browser custom track)
Alignm length: 572
Alignm identity: 422
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 294

Conread position: 6-552
Cow position: chr15:14581862-14581312 (view UCSC Genome Browser custom track)
Alignm length: 559
Alignm identity: 414
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 190

Conread position: 6-552
Cow position: chr15:15346616-15346059 (view UCSC Genome Browser custom track)
Alignm length: 560
Alignm identity: 432
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 300

Conread position: 6-552
Cow position: chr15:17148626-17149172 (view UCSC Genome Browser custom track)
Alignm length: 564
Alignm identity: 391
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 122

Conread position: 6-552
Cow position: chr15:17293575-17294096 (view UCSC Genome Browser custom track)
Alignm length: 559
Alignm identity: 390
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 88

Conread position: 6-552
Cow position: chr15:21665248-21664690 (view UCSC Genome Browser custom track)
Alignm length: 560
Alignm identity: 426
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 513

Conread position: 6-552
Cow position: chr15:24295596-24296139 (view UCSC Genome Browser custom track)
Alignm length: 559
Alignm identity: 412
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 190

Conread position: 8-552
Cow position: chr15:2077158-2077712 (view UCSC Genome Browser custom track)
Alignm length: 560
Alignm identity: 426
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 188

Conread position: 9-295
Cow position: chr15:9913194-9913488 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 0

Conread position: 9-356
Cow position: chr15:32694065-32694412 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 125

Conread position: 9-552
Cow position: chr15:4922649-4923194 (view UCSC Genome Browser custom track)
Alignm length: 556
Alignm identity: 414
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 188

Conread position: 10-306
Cow position: chr15:6471428-6471127 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 139

Conread position: 10-552
Cow position: chr15:19737547-19737007 (view UCSC Genome Browser custom track)
Alignm length: 552
Alignm identity: 421
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 183

Conread position: 11-410
Cow position: chr15:6592115-6591707 (view UCSC Genome Browser custom track)
Alignm length: 414
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 175

Conread position: 11-552
Cow position: chr15:35752815-35752257 (view UCSC Genome Browser custom track)
Alignm length: 562
Alignm identity: 421
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 185

Conread position: 21-268
Cow position: chr15:2012851-2013108 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 193
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 17, 139

Conread position: 21-323
Cow position: chr15:7893006-7892724 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 221
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 12, 64

Conread position: 30-549
Cow position: chr15:32480063-32479559 (view UCSC Genome Browser custom track)
Alignm length: 528
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 56

Conread position: 31-552
Cow position: chr15:31359403-31359919 (view UCSC Genome Browser custom track)
Alignm length: 530
Alignm identity: 405
Alignm E-value: 0
Alignm gaps (pig, cow): 159, 264

Conread position: 37-488
Cow position: chr15:6386810-6386355 (view UCSC Genome Browser custom track)
Alignm length: 460
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 162, 36

Conread position: 39-456
Cow position: chr15:16595364-16595786 (view UCSC Genome Browser custom track)
Alignm length: 424
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 331, 154

Conread position: 39-552
Cow position: chr15:6485121-6485628 (view UCSC Genome Browser custom track)
Alignm length: 522
Alignm identity: 389
Alignm E-value: 0
Alignm gaps (pig, cow): 160, 115

Conread position: 39-552
Cow position: chr15:7234796-7235304 (view UCSC Genome Browser custom track)
Alignm length: 530
Alignm identity: 399
Alignm E-value: 0
Alignm gaps (pig, cow): 151, 24

Conread position: 39-552
Cow position: chr15:53409451-53409966 (view UCSC Genome Browser custom track)
Alignm length: 524
Alignm identity: 386
Alignm E-value: 0
Alignm gaps (pig, cow): 140, 116

Conread position: 68-552
Cow position: chr15:48284255-48284748 (view UCSC Genome Browser custom track)
Alignm length: 501
Alignm identity: 319
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 125, 106

Conread position: 72-368
Cow position: chr15:12420860-12420563 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 199, 0

Conread position: 88-515
Cow position: chr15:6383596-6383153 (view UCSC Genome Browser custom track)
Alignm length: 444
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 0

Conread position: 91-424
Cow position: chr15:36392553-36392230 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 181, 98

Conread position: 95-552
Cow position: chr15:58240-58707 (view UCSC Genome Browser custom track)
Alignm length: 475
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 84, 23

Conread position: 103-552
Cow position: chr15:4915794-4916228 (view UCSC Genome Browser custom track)
Alignm length: 456
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 270, 51

Conread position: 107-552
Cow position: chr15:4950666-4951110 (view UCSC Genome Browser custom track)
Alignm length: 457
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 154, 227

Conread position: 111-552
Cow position: chr15:2588847-2588400 (view UCSC Genome Browser custom track)
Alignm length: 454
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 156

Conread position: 131-552
Cow position: chr15:1299935-1299499 (view UCSC Genome Browser custom track)
Alignm length: 440
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 59

Conread position: 156-539
Cow position: chr15:24717986-24718370 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 121, 33

Conread position: 156-552
Cow position: chr15:41357818-41358212 (view UCSC Genome Browser custom track)
Alignm length: 404
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 237

Conread position: 171-541
Cow position: chr15:6368140-6367772 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 141, 28

Conread position: 171-552
Cow position: chr15:53299147-53299516 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 40

Conread position: 194-516
Cow position: chr15:32493189-32492863 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 86, 255

Conread position: 205-552
Cow position: chr15:8058657-8059018 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 240
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 67, 0

Conread position: 248-552
Cow position: chr15:2013307-2013607 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 227
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 28, 53

Conread position: 260-552
Cow position: chr15:24794577-24794873 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 22

Conread position: 273-551
Cow position: chr15:9912462-9912184 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 97, 112

Conread position: 286-552
Cow position: chr15:3182285-3182019 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 183
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 33, 15

Conread position: 295-551
Cow position: chr15:611514-611248 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 223

Conread position: 306-552
Cow position: chr15:44071388-44071649 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 193
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 10, 215

Conread position: 320-552
Cow position: chr15:2901451-2901213 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 174
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 51, 134

Conread position: 332-552
Cow position: chr15:329155-329385 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 173
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 38, 184

Conread position: 340-552
Cow position: chr15:7938282-7938497 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 173
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 30, 130

Conread position: 356-552
Cow position: chr15:20411451-20411646 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 152
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 107, 5

Conread position: 405-552
Cow position: chr15:20361187-20361041 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 119
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 123, 55

Show alignments to all cow chromosomes.