Cow genome map
| Conread name: | Liv1-LVRM1D010191 |
| Conread position: | 1-117 |
| Cow position: | chr16:49221782-49221663 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 94 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 1-501 |
| Cow position: | chr16:42736242-42735745 (view UCSC Genome Browser custom track) |
| Alignm length: | 518 |
| Alignm identity: | 384 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 187, 29 |
| Conread position: | 1-551 |
| Cow position: | chr16:1567302-1566748 (view UCSC Genome Browser custom track) |
| Alignm length: | 564 |
| Alignm identity: | 425 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 96 |
| Conread position: | 1-551 |
| Cow position: | chr16:51084289-51084860 (view UCSC Genome Browser custom track) |
| Alignm length: | 578 |
| Alignm identity: | 413 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 275 |
| Conread position: | 1-552 |
| Cow position: | chr16:1860372-1860940 (view UCSC Genome Browser custom track) |
| Alignm length: | 577 |
| Alignm identity: | 427 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 145 |
| Conread position: | 1-552 |
| Cow position: | chr16:25085767-25086324 (view UCSC Genome Browser custom track) |
| Alignm length: | 568 |
| Alignm identity: | 426 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 23 |
| Conread position: | 2-169 |
| Cow position: | chr16:20202067-20202237 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 137 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 2-499 |
| Cow position: | chr16:29034202-29034702 (view UCSC Genome Browser custom track) |
| Alignm length: | 515 |
| Alignm identity: | 397 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 27 |
| Conread position: | 3-168 |
| Cow position: | chr16:30049640-30049805 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 127 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 35, 119 |
| Conread position: | 3-205 |
| Cow position: | chr16:25258098-25258308 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 37, 187 |
| Conread position: | 3-294 |
| Cow position: | chr16:26651380-26651673 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 213 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 39, 116 |
| Conread position: | 3-538 |
| Cow position: | chr16:25188800-25189344 (view UCSC Genome Browser custom track) |
| Alignm length: | 546 |
| Alignm identity: | 394 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 192 |
| Conread position: | 3-546 |
| Cow position: | chr16:16270988-16270430 (view UCSC Genome Browser custom track) |
| Alignm length: | 563 |
| Alignm identity: | 429 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 190 |
| Conread position: | 3-551 |
| Cow position: | chr16:37455860-37455306 (view UCSC Genome Browser custom track) |
| Alignm length: | 574 |
| Alignm identity: | 409 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 267, 16 |
| Conread position: | 3-552 |
| Cow position: | chr16:337319-337892 (view UCSC Genome Browser custom track) |
| Alignm length: | 579 |
| Alignm identity: | 415 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 142 |
| Conread position: | 3-552 |
| Cow position: | chr16:9209122-9209663 (view UCSC Genome Browser custom track) |
| Alignm length: | 564 |
| Alignm identity: | 377 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 122 |
| Conread position: | 3-552 |
| Cow position: | chr16:10375448-10374890 (view UCSC Genome Browser custom track) |
| Alignm length: | 562 |
| Alignm identity: | 399 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 192 |
| Conread position: | 3-552 |
| Cow position: | chr16:23670849-23671412 (view UCSC Genome Browser custom track) |
| Alignm length: | 571 |
| Alignm identity: | 427 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 144 |
| Conread position: | 3-552 |
| Cow position: | chr16:27714643-27714113 (view UCSC Genome Browser custom track) |
| Alignm length: | 558 |
| Alignm identity: | 397 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 128 |
| Conread position: | 3-552 |
| Cow position: | chr16:28170219-28169644 (view UCSC Genome Browser custom track) |
| Alignm length: | 577 |
| Alignm identity: | 416 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 365 |
| Conread position: | 4-321 |
| Cow position: | chr16:51405798-51405482 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 180 |
| Conread position: | 5-552 |
| Cow position: | chr16:1432341-1432895 (view UCSC Genome Browser custom track) |
| Alignm length: | 561 |
| Alignm identity: | 413 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 179 |
| Conread position: | 6-424 |
| Cow position: | chr16:15493658-15494084 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 196 |
| Conread position: | 6-437 |
| Cow position: | chr16:2410811-2410375 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 190 |
| Conread position: | 6-458 |
| Cow position: | chr16:37480973-37480527 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 121, 30 |
| Conread position: | 6-545 |
| Cow position: | chr16:12537769-12537255 (view UCSC Genome Browser custom track) |
| Alignm length: | 542 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 265, 187 |
| Conread position: | 6-552 |
| Cow position: | chr16:406878-406331 (view UCSC Genome Browser custom track) |
| Alignm length: | 557 |
| Alignm identity: | 428 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 190, 23 |
| Conread position: | 6-552 |
| Cow position: | chr16:2482984-2482427 (view UCSC Genome Browser custom track) |
| Alignm length: | 562 |
| Alignm identity: | 428 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 292 |
| Conread position: | 6-552 |
| Cow position: | chr16:3089048-3088494 (view UCSC Genome Browser custom track) |
| Alignm length: | 561 |
| Alignm identity: | 402 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 151 |
| Conread position: | 6-552 |
| Cow position: | chr16:4478828-4478265 (view UCSC Genome Browser custom track) |
| Alignm length: | 568 |
| Alignm identity: | 416 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 454 |
| Conread position: | 6-552 |
| Cow position: | chr16:5484886-5485435 (view UCSC Genome Browser custom track) |
| Alignm length: | 560 |
| Alignm identity: | 413 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 184 |
| Conread position: | 6-552 |
| Cow position: | chr16:8815951-8815395 (view UCSC Genome Browser custom track) |
| Alignm length: | 560 |
| Alignm identity: | 424 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 186 |
| Conread position: | 6-552 |
| Cow position: | chr16:14665655-14665103 (view UCSC Genome Browser custom track) |
| Alignm length: | 562 |
| Alignm identity: | 424 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 197 |
| Conread position: | 6-552 |
| Cow position: | chr16:15185227-15185784 (view UCSC Genome Browser custom track) |
| Alignm length: | 561 |
| Alignm identity: | 429 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 184 |
| Conread position: | 6-552 |
| Cow position: | chr16:15476996-15477549 (view UCSC Genome Browser custom track) |
| Alignm length: | 561 |
| Alignm identity: | 420 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 196 |
| Conread position: | 6-552 |
| Cow position: | chr16:23535736-23535184 (view UCSC Genome Browser custom track) |
| Alignm length: | 557 |
| Alignm identity: | 417 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 190 |
| Conread position: | 6-552 |
| Cow position: | chr16:25342124-25342677 (view UCSC Genome Browser custom track) |
| Alignm length: | 568 |
| Alignm identity: | 414 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 190 |
| Conread position: | 6-552 |
| Cow position: | chr16:25441782-25442337 (view UCSC Genome Browser custom track) |
| Alignm length: | 561 |
| Alignm identity: | 432 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 308 |
| Conread position: | 6-552 |
| Cow position: | chr16:25457308-25456771 (view UCSC Genome Browser custom track) |
| Alignm length: | 559 |
| Alignm identity: | 418 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 191 |
| Conread position: | 6-552 |
| Cow position: | chr16:26663905-26664462 (view UCSC Genome Browser custom track) |
| Alignm length: | 560 |
| Alignm identity: | 427 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 330 |
| Conread position: | 6-552 |
| Cow position: | chr16:28470946-28470364 (view UCSC Genome Browser custom track) |
| Alignm length: | 583 |
| Alignm identity: | 408 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 6-552 |
| Cow position: | chr16:29047178-29047731 (view UCSC Genome Browser custom track) |
| Alignm length: | 563 |
| Alignm identity: | 408 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 120 |
| Conread position: | 6-552 |
| Cow position: | chr16:31591764-31591208 (view UCSC Genome Browser custom track) |
| Alignm length: | 561 |
| Alignm identity: | 426 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 205 |
| Conread position: | 6-552 |
| Cow position: | chr16:40296021-40295454 (view UCSC Genome Browser custom track) |
| Alignm length: | 570 |
| Alignm identity: | 425 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 101 |
| Conread position: | 6-552 |
| Cow position: | chr16:43897120-43896554 (view UCSC Genome Browser custom track) |
| Alignm length: | 569 |
| Alignm identity: | 427 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 185 |
| Conread position: | 7-552 |
| Cow position: | chr16:10438408-10438965 (view UCSC Genome Browser custom track) |
| Alignm length: | 561 |
| Alignm identity: | 420 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 189 |
| Conread position: | 9-552 |
| Cow position: | chr16:23252276-23251718 (view UCSC Genome Browser custom track) |
| Alignm length: | 565 |
| Alignm identity: | 423 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 88 |
| Conread position: | 10-551 |
| Cow position: | chr16:18498128-18497612 (view UCSC Genome Browser custom track) |
| Alignm length: | 552 |
| Alignm identity: | 393 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 53 |
| Conread position: | 12-552 |
| Cow position: | chr16:34530475-34531006 (view UCSC Genome Browser custom track) |
| Alignm length: | 564 |
| Alignm identity: | 402 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 13 |
| Conread position: | 15-549 |
| Cow position: | chr16:7676290-7675746 (view UCSC Genome Browser custom track) |
| Alignm length: | 549 |
| Alignm identity: | 400 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 256, 175 |
| Conread position: | 21-552 |
| Cow position: | chr16:26105891-26105342 (view UCSC Genome Browser custom track) |
| Alignm length: | 554 |
| Alignm identity: | 413 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 170 |
| Conread position: | 34-551 |
| Cow position: | chr16:837498-838023 (view UCSC Genome Browser custom track) |
| Alignm length: | 533 |
| Alignm identity: | 400 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 267 |
| Conread position: | 34-552 |
| Cow position: | chr16:15567440-15567966 (view UCSC Genome Browser custom track) |
| Alignm length: | 533 |
| Alignm identity: | 403 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 162, 147 |
| Conread position: | 39-525 |
| Cow position: | chr16:56916874-56916387 (view UCSC Genome Browser custom track) |
| Alignm length: | 498 |
| Alignm identity: | 391 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 237, 148 |
| Conread position: | 39-546 |
| Cow position: | chr16:26978329-26978823 (view UCSC Genome Browser custom track) |
| Alignm length: | 511 |
| Alignm identity: | 363 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 150 |
| Conread position: | 39-552 |
| Cow position: | chr16:3330144-3330645 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 385 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 23 |
| Conread position: | 39-552 |
| Cow position: | chr16:9443591-9443079 (view UCSC Genome Browser custom track) |
| Alignm length: | 529 |
| Alignm identity: | 332 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 165, 135 |
| Conread position: | 39-552 |
| Cow position: | chr16:23983488-23984006 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 395 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 232, 149 |
| Conread position: | 39-552 |
| Cow position: | chr16:49471852-49472345 (view UCSC Genome Browser custom track) |
| Alignm length: | 520 |
| Alignm identity: | 342 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 236, 82 |
| Conread position: | 71-295 |
| Cow position: | chr16:9931071-9931286 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 74-370 |
| Cow position: | chr16:7464053-7464350 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 135, 119 |
| Conread position: | 76-552 |
| Cow position: | chr16:49234403-49233927 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 376 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 195, 115 |
| Conread position: | 139-541 |
| Cow position: | chr16:16897751-16898147 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 35 |
| Conread position: | 145-542 |
| Cow position: | chr16:49221586-49221202 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 159 |
| Conread position: | 153-524 |
| Cow position: | chr16:41166340-41165974 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 34 |
| Conread position: | 161-502 |
| Cow position: | chr16:55049553-55049221 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 241 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 115, 18 |
| Conread position: | 164-552 |
| Cow position: | chr16:23808654-23809029 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 105, 9 |
| Conread position: | 181-407 |
| Cow position: | chr16:41762172-41762401 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 51, 63 |
| Conread position: | 182-552 |
| Cow position: | chr16:28196911-28196535 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 60 |
| Conread position: | 183-480 |
| Cow position: | chr16:20202332-20202628 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 82 |
| Conread position: | 225-550 |
| Cow position: | chr16:2726854-2726509 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 302 |
| Conread position: | 229-552 |
| Cow position: | chr16:2238381-2238058 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 240 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 32, 161 |
| Conread position: | 242-552 |
| Cow position: | chr16:27732988-27732676 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 190 |
| Conread position: | 251-552 |
| Cow position: | chr16:5890398-5890707 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 190 |
| Conread position: | 302-552 |
| Cow position: | chr16:38023776-38024029 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 173 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 68, 117 |
| Conread position: | 309-552 |
| Cow position: | chr16:16520294-16520058 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 180 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 205, 21 |
| Conread position: | 328-552 |
| Cow position: | chr16:25258304-25258528 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 175 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 41, 70 |
| Conread position: | 332-552 |
| Cow position: | chr16:33011-33237 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 370-552 |
| Cow position: | chr16:9931269-9931442 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 95, 67 |
| Conread position: | 384-552 |
| Cow position: | chr16:39366369-39366201 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 128 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 80, 45 |
| Conread position: | 386-552 |
| Cow position: | chr16:16228862-16229026 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 74, 124 |
| Conread position: | 395-552 |
| Cow position: | chr16:41685698-41685540 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 114 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 396-552 |
| Cow position: | chr16:32937074-32937228 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 128 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 73, 21 |
Show alignments to all cow chromosomes.