Cow genome map

Conread name: Liv1-LVRM1D010191

Conread position: 1-239
Cow position: chr2:45964740-45964501 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 190
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 195

Conread position: 1-275
Cow position: chr2:41173045-41173320 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 220
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 13

Conread position: 1-321
Cow position: chr2:69140307-69140632 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 212
Alignm E-value: 9e-28
Alignm gaps (pig, cow): 43, 176

Conread position: 1-360
Cow position: chr2:16290839-16291188 (view UCSC Genome Browser custom track)
Alignm length: 368
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 72

Conread position: 1-480
Cow position: chr2:14823475-14823951 (view UCSC Genome Browser custom track)
Alignm length: 493
Alignm identity: 381
Alignm E-value: 0
Alignm gaps (pig, cow): 187, 64

Conread position: 1-525
Cow position: chr2:36029992-36029468 (view UCSC Genome Browser custom track)
Alignm length: 539
Alignm identity: 390
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 51

Conread position: 1-535
Cow position: chr2:5870010-5869464 (view UCSC Genome Browser custom track)
Alignm length: 553
Alignm identity: 407
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 251

Conread position: 1-544
Cow position: chr2:31298159-31298719 (view UCSC Genome Browser custom track)
Alignm length: 563
Alignm identity: 420
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 173

Conread position: 1-546
Cow position: chr2:5484614-5484108 (view UCSC Genome Browser custom track)
Alignm length: 551
Alignm identity: 416
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 33

Conread position: 1-551
Cow position: chr2:28640474-28639908 (view UCSC Genome Browser custom track)
Alignm length: 569
Alignm identity: 408
Alignm E-value: 0
Alignm gaps (pig, cow): 189, 45

Conread position: 1-552
Cow position: chr2:6976569-6976031 (view UCSC Genome Browser custom track)
Alignm length: 564
Alignm identity: 347
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 37, 132

Conread position: 1-552
Cow position: chr2:11686889-11687416 (view UCSC Genome Browser custom track)
Alignm length: 560
Alignm identity: 367
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 43, 117

Conread position: 1-552
Cow position: chr2:15576462-15575916 (view UCSC Genome Browser custom track)
Alignm length: 567
Alignm identity: 421
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 65

Conread position: 1-552
Cow position: chr2:28613956-28613396 (view UCSC Genome Browser custom track)
Alignm length: 570
Alignm identity: 416
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 148

Conread position: 1-552
Cow position: chr2:32656046-32656581 (view UCSC Genome Browser custom track)
Alignm length: 566
Alignm identity: 422
Alignm E-value: 0
Alignm gaps (pig, cow): 180, 45

Conread position: 1-552
Cow position: chr2:34051544-34052094 (view UCSC Genome Browser custom track)
Alignm length: 563
Alignm identity: 411
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 144

Conread position: 1-552
Cow position: chr2:44990920-44990369 (view UCSC Genome Browser custom track)
Alignm length: 561
Alignm identity: 395
Alignm E-value: 0
Alignm gaps (pig, cow): 190, 23

Conread position: 1-552
Cow position: chr2:47602891-47602328 (view UCSC Genome Browser custom track)
Alignm length: 565
Alignm identity: 422
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 269

Conread position: 1-552
Cow position: chr2:51617625-51618196 (view UCSC Genome Browser custom track)
Alignm length: 578
Alignm identity: 441
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 157

Conread position: 1-552
Cow position: chr2:55483763-55483213 (view UCSC Genome Browser custom track)
Alignm length: 562
Alignm identity: 427
Alignm E-value: 0
Alignm gaps (pig, cow): 269, 42

Conread position: 1-552
Cow position: chr2:78742971-78743504 (view UCSC Genome Browser custom track)
Alignm length: 555
Alignm identity: 422
Alignm E-value: 0
Alignm gaps (pig, cow): 358, 180

Conread position: 2-478
Cow position: chr2:781064-780618 (view UCSC Genome Browser custom track)
Alignm length: 487
Alignm identity: 336
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 41, 112

Conread position: 2-532
Cow position: chr2:77391168-77391690 (view UCSC Genome Browser custom track)
Alignm length: 545
Alignm identity: 343
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 22, 16

Conread position: 2-536
Cow position: chr2:36052631-36052097 (view UCSC Genome Browser custom track)
Alignm length: 550
Alignm identity: 413
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 164

Conread position: 2-543
Cow position: chr2:16075132-16074605 (view UCSC Genome Browser custom track)
Alignm length: 554
Alignm identity: 406
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 104

Conread position: 3-230
Cow position: chr2:49472626-49472857 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 166
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 19, 194

Conread position: 3-336
Cow position: chr2:7903419-7903746 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 25

Conread position: 3-414
Cow position: chr2:67420571-67420152 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 129

Conread position: 3-432
Cow position: chr2:49627987-49628422 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 156

Conread position: 3-520
Cow position: chr2:2412418-2411893 (view UCSC Genome Browser custom track)
Alignm length: 529
Alignm identity: 382
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 114

Conread position: 3-523
Cow position: chr2:4402779-4402256 (view UCSC Genome Browser custom track)
Alignm length: 531
Alignm identity: 386
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 274

Conread position: 3-536
Cow position: chr2:3324181-3323639 (view UCSC Genome Browser custom track)
Alignm length: 546
Alignm identity: 393
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 101

Conread position: 3-544
Cow position: chr2:43961072-43961594 (view UCSC Genome Browser custom track)
Alignm length: 549
Alignm identity: 381
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 190

Conread position: 3-544
Cow position: chr2:74857600-74858136 (view UCSC Genome Browser custom track)
Alignm length: 555
Alignm identity: 381
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 121

Conread position: 3-546
Cow position: chr2:2087794-2087235 (view UCSC Genome Browser custom track)
Alignm length: 562
Alignm identity: 396
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 14

Conread position: 3-552
Cow position: chr2:364680-364131 (view UCSC Genome Browser custom track)
Alignm length: 562
Alignm identity: 401
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 194

Conread position: 3-552
Cow position: chr2:47038043-47037497 (view UCSC Genome Browser custom track)
Alignm length: 561
Alignm identity: 404
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 114

Conread position: 3-552
Cow position: chr2:54737860-54738425 (view UCSC Genome Browser custom track)
Alignm length: 569
Alignm identity: 404
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 345

Conread position: 5-295
Cow position: chr2:14777461-14777188 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 206
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 35, 79

Conread position: 5-552
Cow position: chr2:5903938-5903406 (view UCSC Genome Browser custom track)
Alignm length: 558
Alignm identity: 403
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 191

Conread position: 5-552
Cow position: chr2:28649218-28648668 (view UCSC Genome Browser custom track)
Alignm length: 560
Alignm identity: 421
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 191

Conread position: 6-352
Cow position: chr2:52062926-52063295 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 0

Conread position: 6-355
Cow position: chr2:66307727-66307365 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 202

Conread position: 6-385
Cow position: chr2:32065699-32065316 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 209

Conread position: 6-402
Cow position: chr2:12479689-12479285 (view UCSC Genome Browser custom track)
Alignm length: 410
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 180, 100

Conread position: 6-454
Cow position: chr2:11730210-11730636 (view UCSC Genome Browser custom track)
Alignm length: 461
Alignm identity: 316
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 34, 81

Conread position: 6-516
Cow position: chr2:24147247-24147755 (view UCSC Genome Browser custom track)
Alignm length: 521
Alignm identity: 387
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 99

Conread position: 6-524
Cow position: chr2:22078165-22078689 (view UCSC Genome Browser custom track)
Alignm length: 534
Alignm identity: 385
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 47

Conread position: 6-552
Cow position: chr2:8118923-8119480 (view UCSC Genome Browser custom track)
Alignm length: 562
Alignm identity: 436
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 190

Conread position: 6-552
Cow position: chr2:10185843-10185290 (view UCSC Genome Browser custom track)
Alignm length: 560
Alignm identity: 418
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 72

Conread position: 6-552
Cow position: chr2:11158737-11158183 (view UCSC Genome Browser custom track)
Alignm length: 561
Alignm identity: 422
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 145

Conread position: 6-552
Cow position: chr2:13045332-13044776 (view UCSC Genome Browser custom track)
Alignm length: 559
Alignm identity: 430
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 190

Conread position: 6-552
Cow position: chr2:16900634-16901193 (view UCSC Genome Browser custom track)
Alignm length: 566
Alignm identity: 441
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 267

Conread position: 6-552
Cow position: chr2:19011727-19012299 (view UCSC Genome Browser custom track)
Alignm length: 573
Alignm identity: 434
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 0

Conread position: 6-552
Cow position: chr2:24924944-24925505 (view UCSC Genome Browser custom track)
Alignm length: 566
Alignm identity: 422
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 187

Conread position: 6-552
Cow position: chr2:28793629-28794177 (view UCSC Genome Browser custom track)
Alignm length: 562
Alignm identity: 417
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 193

Conread position: 6-552
Cow position: chr2:47811227-47811786 (view UCSC Genome Browser custom track)
Alignm length: 564
Alignm identity: 419
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 63

Conread position: 6-552
Cow position: chr2:50077981-50078504 (view UCSC Genome Browser custom track)
Alignm length: 554
Alignm identity: 407
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 135

Conread position: 6-552
Cow position: chr2:53330143-53330701 (view UCSC Genome Browser custom track)
Alignm length: 562
Alignm identity: 421
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 195

Conread position: 6-552
Cow position: chr2:81257555-81258113 (view UCSC Genome Browser custom track)
Alignm length: 567
Alignm identity: 414
Alignm E-value: 0
Alignm gaps (pig, cow): 81, 188

Conread position: 7-531
Cow position: chr2:13482270-13481780 (view UCSC Genome Browser custom track)
Alignm length: 531
Alignm identity: 380
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 36

Conread position: 8-237
Cow position: chr2:53662092-53662323 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 174
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 28, 76

Conread position: 9-550
Cow position: chr2:42670321-42669772 (view UCSC Genome Browser custom track)
Alignm length: 554
Alignm identity: 415
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 208

Conread position: 9-552
Cow position: chr2:282305-281748 (view UCSC Genome Browser custom track)
Alignm length: 563
Alignm identity: 421
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 182

Conread position: 9-552
Cow position: chr2:36980765-36981326 (view UCSC Genome Browser custom track)
Alignm length: 567
Alignm identity: 415
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 142

Conread position: 10-529
Cow position: chr2:37789537-37789007 (view UCSC Genome Browser custom track)
Alignm length: 549
Alignm identity: 385
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 107

Conread position: 11-311
Cow position: chr2:27317699-27317993 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 79

Conread position: 16-205
Cow position: chr2:195151-194963 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 150
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 28, 106

Conread position: 21-551
Cow position: chr2:28619559-28619029 (view UCSC Genome Browser custom track)
Alignm length: 542
Alignm identity: 401
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 137

Conread position: 24-552
Cow position: chr2:72188073-72187567 (view UCSC Genome Browser custom track)
Alignm length: 540
Alignm identity: 382
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 158

Conread position: 25-552
Cow position: chr2:38801386-38800872 (view UCSC Genome Browser custom track)
Alignm length: 532
Alignm identity: 337
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 66, 17

Conread position: 32-552
Cow position: chr2:9189605-9189087 (view UCSC Genome Browser custom track)
Alignm length: 546
Alignm identity: 382
Alignm E-value: 0
Alignm gaps (pig, cow): 137, 15

Conread position: 39-360
Cow position: chr2:4926996-4926680 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 225
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 117, 55

Conread position: 39-481
Cow position: chr2:51998510-51998059 (view UCSC Genome Browser custom track)
Alignm length: 459
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 131, 257

Conread position: 39-552
Cow position: chr2:175146-174628 (view UCSC Genome Browser custom track)
Alignm length: 526
Alignm identity: 385
Alignm E-value: 0
Alignm gaps (pig, cow): 82, 175

Conread position: 56-552
Cow position: chr2:34564208-34563738 (view UCSC Genome Browser custom track)
Alignm length: 503
Alignm identity: 371
Alignm E-value: 0
Alignm gaps (pig, cow): 218, 103

Conread position: 61-552
Cow position: chr2:247432-246944 (view UCSC Genome Browser custom track)
Alignm length: 502
Alignm identity: 377
Alignm E-value: 0
Alignm gaps (pig, cow): 297, 77

Conread position: 88-546
Cow position: chr2:32372914-32372465 (view UCSC Genome Browser custom track)
Alignm length: 464
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 183, 89

Conread position: 95-435
Cow position: chr2:31390449-31390790 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 217
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 278, 29

Conread position: 105-552
Cow position: chr2:45916354-45915903 (view UCSC Genome Browser custom track)
Alignm length: 459
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 80

Conread position: 111-552
Cow position: chr2:25888052-25887613 (view UCSC Genome Browser custom track)
Alignm length: 451
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 85, 76

Conread position: 139-552
Cow position: chr2:72234437-72234034 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 263
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 26, 9

Conread position: 150-531
Cow position: chr2:11693015-11693403 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 254
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 121, 30

Conread position: 168-552
Cow position: chr2:65937692-65937296 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 103, 25

Conread position: 178-552
Cow position: chr2:41687328-41687704 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 42

Conread position: 182-552
Cow position: chr2:57336103-57336482 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 326

Conread position: 183-516
Cow position: chr2:50982789-50982456 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 56

Conread position: 194-552
Cow position: chr2:41180708-41181066 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 257
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 43, 85

Conread position: 215-552
Cow position: chr2:32434726-32434385 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 102

Conread position: 222-545
Cow position: chr2:38374388-38374710 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 235
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 35, 20

Conread position: 225-552
Cow position: chr2:80292151-80291827 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 17

Conread position: 230-552
Cow position: chr2:12223667-12223341 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 240
Alignm E-value: 9e-38
Alignm gaps (pig, cow): 41, 272

Conread position: 254-523
Cow position: chr2:73193695-73193958 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 195
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 42, 33

Conread position: 269-552
Cow position: chr2:72681462-72681181 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 198
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 49, 89

Conread position: 271-552
Cow position: chr2:19225529-19225810 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 150

Conread position: 311-552
Cow position: chr2:43445640-43445884 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 189
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 58, 87

Conread position: 315-552
Cow position: chr2:45938989-45938755 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 193
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 185

Conread position: 328-552
Cow position: chr2:32458337-32458123 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 167
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 135, 54

Conread position: 337-552
Cow position: chr2:10264689-10264470 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 171
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 33, 91

Conread position: 341-552
Cow position: chr2:6880076-6880290 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 166
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 34, 57

Conread position: 344-552
Cow position: chr2:25743261-25743479 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 163
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 26, 142

Conread position: 368-541
Cow position: chr2:16291437-16291613 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 139
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 59, 143

Conread position: 368-552
Cow position: chr2:41154571-41154754 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 145
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 95, 67

Show alignments to all cow chromosomes.