Cow genome map
| Conread name: | Liv1-LVRM1D010191 |
| Conread position: | 1-137 |
| Cow position: | chr21:4077842-4077981 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 116 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 1-226 |
| Cow position: | chr21:6624781-6625008 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 179 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 89 |
| Conread position: | 1-259 |
| Cow position: | chr21:13313768-13314024 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 207 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 77 |
| Conread position: | 1-260 |
| Cow position: | chr21:37719011-37718756 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 206 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 137 |
| Conread position: | 1-471 |
| Cow position: | chr21:467877-468342 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 125 |
| Conread position: | 1-521 |
| Cow position: | chr21:30086-30599 (view UCSC Genome Browser custom track) |
| Alignm length: | 532 |
| Alignm identity: | 401 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 194 |
| Conread position: | 1-535 |
| Cow position: | chr21:26402479-26401942 (view UCSC Genome Browser custom track) |
| Alignm length: | 547 |
| Alignm identity: | 390 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 195 |
| Conread position: | 1-543 |
| Cow position: | chr21:9892900-9893448 (view UCSC Genome Browser custom track) |
| Alignm length: | 563 |
| Alignm identity: | 402 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 211 |
| Conread position: | 1-546 |
| Cow position: | chr21:2417225-2417773 (view UCSC Genome Browser custom track) |
| Alignm length: | 558 |
| Alignm identity: | 439 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 149 |
| Conread position: | 1-552 |
| Cow position: | chr21:360652-361230 (view UCSC Genome Browser custom track) |
| Alignm length: | 587 |
| Alignm identity: | 418 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 483 |
| Conread position: | 1-552 |
| Cow position: | chr21:4184913-4185485 (view UCSC Genome Browser custom track) |
| Alignm length: | 578 |
| Alignm identity: | 443 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 253 |
| Conread position: | 1-552 |
| Cow position: | chr21:45491058-45491610 (view UCSC Genome Browser custom track) |
| Alignm length: | 559 |
| Alignm identity: | 344 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 23, 180 |
| Conread position: | 3-189 |
| Cow position: | chr21:20743569-20743381 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 35, 109 |
| Conread position: | 3-262 |
| Cow position: | chr21:49325471-49325730 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 173 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 35, 181 |
| Conread position: | 3-507 |
| Cow position: | chr21:18817543-18817023 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 393 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 154 |
| Conread position: | 3-540 |
| Cow position: | chr21:28256444-28256997 (view UCSC Genome Browser custom track) |
| Alignm length: | 566 |
| Alignm identity: | 405 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 133 |
| Conread position: | 3-552 |
| Cow position: | chr21:1287207-1286647 (view UCSC Genome Browser custom track) |
| Alignm length: | 578 |
| Alignm identity: | 430 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 292 |
| Conread position: | 3-552 |
| Cow position: | chr21:34823202-34822644 (view UCSC Genome Browser custom track) |
| Alignm length: | 561 |
| Alignm identity: | 408 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 13 |
| Conread position: | 4-512 |
| Cow position: | chr21:4588982-4588457 (view UCSC Genome Browser custom track) |
| Alignm length: | 535 |
| Alignm identity: | 396 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 117 |
| Conread position: | 5-284 |
| Cow position: | chr21:48292462-48292747 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 115 |
| Conread position: | 6-295 |
| Cow position: | chr21:10567690-10567973 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 254, 33 |
| Conread position: | 6-306 |
| Cow position: | chr21:5018127-5018431 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 175, 0 |
| Conread position: | 6-416 |
| Cow position: | chr21:2882724-2882315 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 12 |
| Conread position: | 6-450 |
| Cow position: | chr21:1192774-1193219 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 190, 181 |
| Conread position: | 6-541 |
| Cow position: | chr21:5840250-5839706 (view UCSC Genome Browser custom track) |
| Alignm length: | 548 |
| Alignm identity: | 415 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 184 |
| Conread position: | 6-552 |
| Cow position: | chr21:146943-147490 (view UCSC Genome Browser custom track) |
| Alignm length: | 557 |
| Alignm identity: | 424 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 186 |
| Conread position: | 6-552 |
| Cow position: | chr21:31515314-31514748 (view UCSC Genome Browser custom track) |
| Alignm length: | 567 |
| Alignm identity: | 431 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 6-552 |
| Cow position: | chr21:33253190-33253749 (view UCSC Genome Browser custom track) |
| Alignm length: | 567 |
| Alignm identity: | 419 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 104 |
| Conread position: | 6-552 |
| Cow position: | chr21:35144771-35145318 (view UCSC Genome Browser custom track) |
| Alignm length: | 559 |
| Alignm identity: | 427 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 168 |
| Conread position: | 6-552 |
| Cow position: | chr21:40270658-40270106 (view UCSC Genome Browser custom track) |
| Alignm length: | 562 |
| Alignm identity: | 427 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 193, 183 |
| Conread position: | 9-552 |
| Cow position: | chr21:3779784-3780340 (view UCSC Genome Browser custom track) |
| Alignm length: | 558 |
| Alignm identity: | 427 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 184 |
| Conread position: | 9-552 |
| Cow position: | chr21:27069951-27069394 (view UCSC Genome Browser custom track) |
| Alignm length: | 562 |
| Alignm identity: | 420 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 308 |
| Conread position: | 11-552 |
| Cow position: | chr21:37372256-37372801 (view UCSC Genome Browser custom track) |
| Alignm length: | 552 |
| Alignm identity: | 405 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 184 |
| Conread position: | 15-411 |
| Cow position: | chr21:26835913-26836321 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 157 |
| Conread position: | 16-552 |
| Cow position: | chr21:45782505-45783042 (view UCSC Genome Browser custom track) |
| Alignm length: | 546 |
| Alignm identity: | 415 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 369 |
| Conread position: | 19-545 |
| Cow position: | chr21:30598447-30597919 (view UCSC Genome Browser custom track) |
| Alignm length: | 538 |
| Alignm identity: | 405 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 147 |
| Conread position: | 25-365 |
| Cow position: | chr21:40080332-40080668 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 231 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 15, 22 |
| Conread position: | 39-552 |
| Cow position: | chr21:10851129-10851643 (view UCSC Genome Browser custom track) |
| Alignm length: | 527 |
| Alignm identity: | 392 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 152, 314 |
| Conread position: | 39-552 |
| Cow position: | chr21:27284502-27285035 (view UCSC Genome Browser custom track) |
| Alignm length: | 535 |
| Alignm identity: | 404 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 127, 424 |
| Conread position: | 43-371 |
| Cow position: | chr21:2673953-2673623 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 155, 146 |
| Conread position: | 48-484 |
| Cow position: | chr21:29625685-29625221 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 192, 144 |
| Conread position: | 49-552 |
| Cow position: | chr21:27036341-27035831 (view UCSC Genome Browser custom track) |
| Alignm length: | 512 |
| Alignm identity: | 379 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 232, 143 |
| Conread position: | 55-552 |
| Cow position: | chr21:7063581-7064070 (view UCSC Genome Browser custom track) |
| Alignm length: | 505 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 314, 17 |
| Conread position: | 66-552 |
| Cow position: | chr21:47942024-47942515 (view UCSC Genome Browser custom track) |
| Alignm length: | 494 |
| Alignm identity: | 375 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 303, 127 |
| Conread position: | 69-552 |
| Cow position: | chr21:17167635-17168118 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 311 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 130, 35 |
| Conread position: | 91-552 |
| Cow position: | chr21:28736275-28736735 (view UCSC Genome Browser custom track) |
| Alignm length: | 475 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 87 |
| Conread position: | 103-552 |
| Cow position: | chr21:47646455-47646901 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 42 |
| Conread position: | 111-521 |
| Cow position: | chr21:11452424-11452018 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 256, 81 |
| Conread position: | 114-552 |
| Cow position: | chr21:26849896-26849452 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 16 |
| Conread position: | 159-552 |
| Cow position: | chr21:27566915-27567312 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 31 |
| Conread position: | 195-407 |
| Cow position: | chr21:4077988-4078197 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 175, 66 |
| Conread position: | 208-552 |
| Cow position: | chr21:5012487-5012141 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 18 |
| Conread position: | 210-552 |
| Cow position: | chr21:28613567-28613894 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 94 |
| Conread position: | 250-436 |
| Cow position: | chr21:37718644-37718461 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 145 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 120, 22 |
| Conread position: | 273-531 |
| Cow position: | chr21:39480324-39480069 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 171 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 190, 9 |
| Conread position: | 396-552 |
| Cow position: | chr21:2673557-2673402 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 120 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 59, 34 |
| Conread position: | 416-552 |
| Cow position: | chr21:13298030-13298164 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 110 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 50, 19 |
| Conread position: | 428-552 |
| Cow position: | chr21:31250454-31250578 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 97 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 36, 48 |
Show alignments to all cow chromosomes.