Cow genome map

Conread name: Liv1-LVRM1D010191

Conread position: 1-188
Cow position: chr3:24589003-24588813 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 149
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 34, 0

Conread position: 1-222
Cow position: chr3:49678565-49678793 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 183
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 35, 139

Conread position: 1-264
Cow position: chr3:15806299-15806565 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 174
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 12, 36

Conread position: 1-273
Cow position: chr3:31420101-31420377 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 192
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 43, 25

Conread position: 1-277
Cow position: chr3:58948379-58948665 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 271

Conread position: 1-489
Cow position: chr3:22853725-22853243 (view UCSC Genome Browser custom track)
Alignm length: 499
Alignm identity: 314
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 42, 180

Conread position: 1-501
Cow position: chr3:64357031-64356530 (view UCSC Genome Browser custom track)
Alignm length: 510
Alignm identity: 401
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 179

Conread position: 1-526
Cow position: chr3:77424398-77424912 (view UCSC Genome Browser custom track)
Alignm length: 541
Alignm identity: 395
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 84

Conread position: 1-549
Cow position: chr3:63002780-63002242 (view UCSC Genome Browser custom track)
Alignm length: 559
Alignm identity: 433
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 196

Conread position: 1-552
Cow position: chr3:2907007-2906449 (view UCSC Genome Browser custom track)
Alignm length: 565
Alignm identity: 439
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 164

Conread position: 1-552
Cow position: chr3:6686573-6687110 (view UCSC Genome Browser custom track)
Alignm length: 554
Alignm identity: 436
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 144

Conread position: 1-552
Cow position: chr3:6877408-6876854 (view UCSC Genome Browser custom track)
Alignm length: 572
Alignm identity: 436
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 82

Conread position: 1-552
Cow position: chr3:29579389-29579949 (view UCSC Genome Browser custom track)
Alignm length: 569
Alignm identity: 413
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 71

Conread position: 1-552
Cow position: chr3:38493999-38494561 (view UCSC Genome Browser custom track)
Alignm length: 564
Alignm identity: 417
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 89

Conread position: 1-552
Cow position: chr3:48229715-48229155 (view UCSC Genome Browser custom track)
Alignm length: 569
Alignm identity: 449
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 78

Conread position: 2-295
Cow position: chr3:50646020-50646315 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 195
Alignm E-value: 9e-28
Alignm gaps (pig, cow): 42, 157

Conread position: 2-391
Cow position: chr3:11198790-11198391 (view UCSC Genome Browser custom track)
Alignm length: 403
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 241

Conread position: 2-473
Cow position: chr3:19944994-19945476 (view UCSC Genome Browser custom track)
Alignm length: 497
Alignm identity: 363
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 243

Conread position: 2-552
Cow position: chr3:3057595-3058135 (view UCSC Genome Browser custom track)
Alignm length: 578
Alignm identity: 419
Alignm E-value: 0
Alignm gaps (pig, cow): 6, 114

Conread position: 3-277
Cow position: chr3:20381308-20381585 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 192

Conread position: 3-371
Cow position: chr3:50126868-50126474 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 0

Conread position: 3-455
Cow position: chr3:63200379-63200823 (view UCSC Genome Browser custom track)
Alignm length: 463
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 29

Conread position: 3-489
Cow position: chr3:47177507-47177012 (view UCSC Genome Browser custom track)
Alignm length: 498
Alignm identity: 354
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 179

Conread position: 3-526
Cow position: chr3:37989651-37990178 (view UCSC Genome Browser custom track)
Alignm length: 541
Alignm identity: 341
Alignm E-value: 7e-36
Alignm gaps (pig, cow): 41, 75

Conread position: 3-550
Cow position: chr3:3523787-3524333 (view UCSC Genome Browser custom track)
Alignm length: 559
Alignm identity: 385
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 208

Conread position: 3-552
Cow position: chr3:19800411-19799852 (view UCSC Genome Browser custom track)
Alignm length: 562
Alignm identity: 405
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 192

Conread position: 3-552
Cow position: chr3:19939658-19940215 (view UCSC Genome Browser custom track)
Alignm length: 568
Alignm identity: 414
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 154

Conread position: 3-552
Cow position: chr3:24346734-24347269 (view UCSC Genome Browser custom track)
Alignm length: 556
Alignm identity: 419
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 163

Conread position: 3-552
Cow position: chr3:37969807-37970366 (view UCSC Genome Browser custom track)
Alignm length: 561
Alignm identity: 412
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 192

Conread position: 3-552
Cow position: chr3:45033513-45034059 (view UCSC Genome Browser custom track)
Alignm length: 561
Alignm identity: 392
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 261

Conread position: 3-552
Cow position: chr3:50916104-50916664 (view UCSC Genome Browser custom track)
Alignm length: 568
Alignm identity: 416
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 164

Conread position: 3-552
Cow position: chr3:56397954-56398506 (view UCSC Genome Browser custom track)
Alignm length: 567
Alignm identity: 400
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 190

Conread position: 4-270
Cow position: chr3:4028939-4029206 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 190

Conread position: 4-516
Cow position: chr3:40342886-40343409 (view UCSC Genome Browser custom track)
Alignm length: 528
Alignm identity: 376
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 234

Conread position: 4-552
Cow position: chr3:48843017-48843576 (view UCSC Genome Browser custom track)
Alignm length: 562
Alignm identity: 407
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 191

Conread position: 5-543
Cow position: chr3:5884311-5884842 (view UCSC Genome Browser custom track)
Alignm length: 549
Alignm identity: 406
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 191

Conread position: 5-550
Cow position: chr3:15181133-15181676 (view UCSC Genome Browser custom track)
Alignm length: 562
Alignm identity: 410
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 114

Conread position: 5-552
Cow position: chr3:64027358-64026815 (view UCSC Genome Browser custom track)
Alignm length: 558
Alignm identity: 389
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 58

Conread position: 6-332
Cow position: chr3:18541372-18541042 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 15

Conread position: 6-402
Cow position: chr3:75040392-75039990 (view UCSC Genome Browser custom track)
Alignm length: 407
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 178

Conread position: 6-498
Cow position: chr3:45975271-45975764 (view UCSC Genome Browser custom track)
Alignm length: 507
Alignm identity: 369
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 237

Conread position: 6-526
Cow position: chr3:19756180-19755644 (view UCSC Genome Browser custom track)
Alignm length: 542
Alignm identity: 404
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 455

Conread position: 6-541
Cow position: chr3:56339650-56339108 (view UCSC Genome Browser custom track)
Alignm length: 549
Alignm identity: 399
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 293

Conread position: 6-549
Cow position: chr3:30315332-30315866 (view UCSC Genome Browser custom track)
Alignm length: 556
Alignm identity: 402
Alignm E-value: 0
Alignm gaps (pig, cow): 189, 133

Conread position: 6-552
Cow position: chr3:2710100-2709547 (view UCSC Genome Browser custom track)
Alignm length: 561
Alignm identity: 433
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 146

Conread position: 6-552
Cow position: chr3:5953412-5952861 (view UCSC Genome Browser custom track)
Alignm length: 570
Alignm identity: 405
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 162

Conread position: 6-552
Cow position: chr3:10240425-10240973 (view UCSC Genome Browser custom track)
Alignm length: 557
Alignm identity: 418
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 464

Conread position: 6-552
Cow position: chr3:21181932-21181373 (view UCSC Genome Browser custom track)
Alignm length: 562
Alignm identity: 434
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 190

Conread position: 6-552
Cow position: chr3:23289566-23289014 (view UCSC Genome Browser custom track)
Alignm length: 561
Alignm identity: 417
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 190

Conread position: 6-552
Cow position: chr3:24445310-24444753 (view UCSC Genome Browser custom track)
Alignm length: 559
Alignm identity: 427
Alignm E-value: 0
Alignm gaps (pig, cow): 175, 511

Conread position: 6-552
Cow position: chr3:40824160-40824712 (view UCSC Genome Browser custom track)
Alignm length: 555
Alignm identity: 422
Alignm E-value: 0
Alignm gaps (pig, cow): 269, 187

Conread position: 6-552
Cow position: chr3:48058586-48058041 (view UCSC Genome Browser custom track)
Alignm length: 561
Alignm identity: 413
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 90

Conread position: 6-552
Cow position: chr3:49544441-49543884 (view UCSC Genome Browser custom track)
Alignm length: 561
Alignm identity: 428
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 125

Conread position: 6-552
Cow position: chr3:53516380-53516924 (view UCSC Genome Browser custom track)
Alignm length: 559
Alignm identity: 412
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 187

Conread position: 6-552
Cow position: chr3:57483958-57483403 (view UCSC Genome Browser custom track)
Alignm length: 560
Alignm identity: 421
Alignm E-value: 0
Alignm gaps (pig, cow): 265, 109

Conread position: 6-552
Cow position: chr3:59862141-59862692 (view UCSC Genome Browser custom track)
Alignm length: 561
Alignm identity: 425
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 471

Conread position: 6-552
Cow position: chr3:66620952-66621520 (view UCSC Genome Browser custom track)
Alignm length: 575
Alignm identity: 425
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 79

Conread position: 6-552
Cow position: chr3:72630844-72631386 (view UCSC Genome Browser custom track)
Alignm length: 557
Alignm identity: 422
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 188

Conread position: 6-552
Cow position: chr3:78026651-78026093 (view UCSC Genome Browser custom track)
Alignm length: 566
Alignm identity: 424
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 152

Conread position: 7-322
Cow position: chr3:21147959-21147649 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 223
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 152, 92

Conread position: 9-551
Cow position: chr3:5994317-5993761 (view UCSC Genome Browser custom track)
Alignm length: 563
Alignm identity: 416
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 182

Conread position: 9-552
Cow position: chr3:42447879-42448436 (view UCSC Genome Browser custom track)
Alignm length: 562
Alignm identity: 408
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 105

Conread position: 10-552
Cow position: chr3:18812281-18812818 (view UCSC Genome Browser custom track)
Alignm length: 553
Alignm identity: 412
Alignm E-value: 0
Alignm gaps (pig, cow): 186, 114

Conread position: 17-552
Cow position: chr3:49136781-49136245 (view UCSC Genome Browser custom track)
Alignm length: 551
Alignm identity: 417
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 166

Conread position: 29-552
Cow position: chr3:14237533-14237013 (view UCSC Genome Browser custom track)
Alignm length: 536
Alignm identity: 331
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 11, 143

Conread position: 39-458
Cow position: chr3:83274291-83274707 (view UCSC Genome Browser custom track)
Alignm length: 425
Alignm identity: 259
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 54, 111

Conread position: 39-552
Cow position: chr3:34506543-34506024 (view UCSC Genome Browser custom track)
Alignm length: 523
Alignm identity: 385
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 140

Conread position: 39-552
Cow position: chr3:68872951-68872435 (view UCSC Genome Browser custom track)
Alignm length: 528
Alignm identity: 362
Alignm E-value: 0
Alignm gaps (pig, cow): 107, 292

Conread position: 39-552
Cow position: chr3:70887942-70888458 (view UCSC Genome Browser custom track)
Alignm length: 525
Alignm identity: 368
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 17

Conread position: 50-552
Cow position: chr3:60264201-60263698 (view UCSC Genome Browser custom track)
Alignm length: 516
Alignm identity: 334
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 149, 20

Conread position: 60-522
Cow position: chr3:46016871-46017334 (view UCSC Genome Browser custom track)
Alignm length: 473
Alignm identity: 359
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 19

Conread position: 79-552
Cow position: chr3:67164129-67164600 (view UCSC Genome Browser custom track)
Alignm length: 482
Alignm identity: 368
Alignm E-value: 0
Alignm gaps (pig, cow): 119, 157

Conread position: 88-552
Cow position: chr3:64822959-64823427 (view UCSC Genome Browser custom track)
Alignm length: 475
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 282, 91

Conread position: 110-534
Cow position: chr3:55892285-55892703 (view UCSC Genome Browser custom track)
Alignm length: 435
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 71

Conread position: 114-526
Cow position: chr3:77444346-77444731 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 291
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 248, 74

Conread position: 121-552
Cow position: chr3:15054795-15054377 (view UCSC Genome Browser custom track)
Alignm length: 444
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 99

Conread position: 136-552
Cow position: chr3:39880105-39879693 (view UCSC Genome Browser custom track)
Alignm length: 425
Alignm identity: 286
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 127, 75

Conread position: 138-502
Cow position: chr3:6662260-6662622 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 249
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 172, 35

Conread position: 159-545
Cow position: chr3:35963918-35964299 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 210, 33

Conread position: 162-552
Cow position: chr3:30331186-30330800 (view UCSC Genome Browser custom track)
Alignm length: 399
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 201, 30

Conread position: 163-552
Cow position: chr3:7478995-7478597 (view UCSC Genome Browser custom track)
Alignm length: 402
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 97, 30

Conread position: 166-552
Cow position: chr3:56100758-56100361 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 164

Conread position: 196-552
Cow position: chr3:40339189-40338828 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 105

Conread position: 205-552
Cow position: chr3:595105-595456 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 93

Conread position: 213-552
Cow position: chr3:2854468-2854126 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 294

Conread position: 215-552
Cow position: chr3:36877680-36877332 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 19

Conread position: 236-552
Cow position: chr3:24588451-24588144 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 99

Conread position: 246-552
Cow position: chr3:56295194-56295506 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 200

Conread position: 267-552
Cow position: chr3:47087331-47087616 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 37

Conread position: 271-552
Cow position: chr3:63255175-63255462 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 201
Alignm E-value: 8e-38
Alignm gaps (pig, cow): 99, 12

Conread position: 315-552
Cow position: chr3:38867394-38867637 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 186
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 55, 145

Conread position: 327-536
Cow position: chr3:42720604-42720395 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 168
Alignm E-value: 8e-37
Alignm gaps (pig, cow): 59, 110

Conread position: 327-546
Cow position: chr3:33843726-33843506 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 153
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 32, 116

Conread position: 328-552
Cow position: chr3:31416109-31416340 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 179
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 0

Conread position: 332-552
Cow position: chr3:72671432-72671208 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 171
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 38, 104

Conread position: 368-549
Cow position: chr3:58948674-58948854 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 146
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 21, 38

Conread position: 375-552
Cow position: chr3:55486143-55486314 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 132
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 153, 9

Conread position: 404-552
Cow position: chr3:23206700-23206552 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 110
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 60, 40

Conread position: 418-551
Cow position: chr3:18462648-18462514 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 106
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 46, 112

Conread position: 418-552
Cow position: chr3:2509856-2509719 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 112
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 46, 0

Show alignments to all cow chromosomes.