Cow genome map

Conread name: Liv1-LVRM1D010191

Conread position: 1-221
Cow position: chr5:29766550-29766784 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 182
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 35, 114

Conread position: 1-257
Cow position: chr5:39246146-39245889 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 201
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 190

Conread position: 1-272
Cow position: chr5:27056014-27055738 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 269

Conread position: 1-459
Cow position: chr5:28012320-28012803 (view UCSC Genome Browser custom track)
Alignm length: 485
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 171

Conread position: 1-542
Cow position: chr5:307662-307110 (view UCSC Genome Browser custom track)
Alignm length: 554
Alignm identity: 395
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 549

Conread position: 1-543
Cow position: chr5:46629520-46628971 (view UCSC Genome Browser custom track)
Alignm length: 562
Alignm identity: 411
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 428

Conread position: 1-544
Cow position: chr5:41554669-41554117 (view UCSC Genome Browser custom track)
Alignm length: 560
Alignm identity: 412
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 156

Conread position: 1-552
Cow position: chr5:41528108-41527567 (view UCSC Genome Browser custom track)
Alignm length: 566
Alignm identity: 443
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 149

Conread position: 1-552
Cow position: chr5:41961059-41960520 (view UCSC Genome Browser custom track)
Alignm length: 560
Alignm identity: 443
Alignm E-value: 0
Alignm gaps (pig, cow): 189, 68

Conread position: 1-552
Cow position: chr5:45700980-45701540 (view UCSC Genome Browser custom track)
Alignm length: 565
Alignm identity: 451
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 58

Conread position: 1-552
Cow position: chr5:46668616-46669160 (view UCSC Genome Browser custom track)
Alignm length: 562
Alignm identity: 422
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 20

Conread position: 1-552
Cow position: chr5:54791966-54791406 (view UCSC Genome Browser custom track)
Alignm length: 565
Alignm identity: 413
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 139

Conread position: 3-230
Cow position: chr5:32308726-32308497 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 171
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 41, 180

Conread position: 3-236
Cow position: chr5:59639448-59639677 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 176
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 63, 73

Conread position: 3-288
Cow position: chr5:54861393-54861121 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 220
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 138

Conread position: 3-306
Cow position: chr5:48532696-48532992 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 217
Alignm E-value: 8.99999e-40
Alignm gaps (pig, cow): 19, 152

Conread position: 3-308
Cow position: chr5:52434219-52434520 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 86

Conread position: 3-322
Cow position: chr5:27002678-27002992 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 143, 40

Conread position: 3-323
Cow position: chr5:28241720-28242040 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 190

Conread position: 3-360
Cow position: chr5:9419403-9419045 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 133

Conread position: 3-391
Cow position: chr5:13046119-13046520 (view UCSC Genome Browser custom track)
Alignm length: 404
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 176, 40

Conread position: 3-480
Cow position: chr5:49757996-49757523 (view UCSC Genome Browser custom track)
Alignm length: 484
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 99

Conread position: 3-491
Cow position: chr5:58152099-58151621 (view UCSC Genome Browser custom track)
Alignm length: 497
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 175, 33

Conread position: 3-531
Cow position: chr5:53625242-53624718 (view UCSC Genome Browser custom track)
Alignm length: 537
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 26

Conread position: 3-552
Cow position: chr5:3965118-3965669 (view UCSC Genome Browser custom track)
Alignm length: 562
Alignm identity: 410
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 13

Conread position: 3-552
Cow position: chr5:4018533-4017972 (view UCSC Genome Browser custom track)
Alignm length: 564
Alignm identity: 387
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 183

Conread position: 3-552
Cow position: chr5:10842711-10842155 (view UCSC Genome Browser custom track)
Alignm length: 566
Alignm identity: 403
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 191

Conread position: 3-552
Cow position: chr5:14784699-14784143 (view UCSC Genome Browser custom track)
Alignm length: 577
Alignm identity: 409
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 78

Conread position: 3-552
Cow position: chr5:18664459-18665001 (view UCSC Genome Browser custom track)
Alignm length: 564
Alignm identity: 398
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 195

Conread position: 3-552
Cow position: chr5:23959648-23959103 (view UCSC Genome Browser custom track)
Alignm length: 560
Alignm identity: 392
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 114

Conread position: 3-552
Cow position: chr5:32773442-32773991 (view UCSC Genome Browser custom track)
Alignm length: 561
Alignm identity: 395
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 189

Conread position: 3-552
Cow position: chr5:47830404-47829851 (view UCSC Genome Browser custom track)
Alignm length: 560
Alignm identity: 405
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 188

Conread position: 4-483
Cow position: chr5:41465742-41466231 (view UCSC Genome Browser custom track)
Alignm length: 496
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 189

Conread position: 5-552
Cow position: chr5:6154230-6153673 (view UCSC Genome Browser custom track)
Alignm length: 563
Alignm identity: 422
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 73

Conread position: 6-489
Cow position: chr5:52613276-52612795 (view UCSC Genome Browser custom track)
Alignm length: 497
Alignm identity: 327
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 38, 96

Conread position: 6-535
Cow position: chr5:10919497-10920028 (view UCSC Genome Browser custom track)
Alignm length: 541
Alignm identity: 378
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 165

Conread position: 6-551
Cow position: chr5:47893868-47893319 (view UCSC Genome Browser custom track)
Alignm length: 559
Alignm identity: 385
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 158

Conread position: 6-552
Cow position: chr5:1341361-1340804 (view UCSC Genome Browser custom track)
Alignm length: 562
Alignm identity: 420
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 115

Conread position: 6-552
Cow position: chr5:2915120-2915668 (view UCSC Genome Browser custom track)
Alignm length: 556
Alignm identity: 416
Alignm E-value: 0
Alignm gaps (pig, cow): 179, 427

Conread position: 6-552
Cow position: chr5:3503447-3502882 (view UCSC Genome Browser custom track)
Alignm length: 569
Alignm identity: 421
Alignm E-value: 0
Alignm gaps (pig, cow): 177, 317

Conread position: 6-552
Cow position: chr5:3786590-3787154 (view UCSC Genome Browser custom track)
Alignm length: 568
Alignm identity: 426
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 320

Conread position: 6-552
Cow position: chr5:4069891-4070447 (view UCSC Genome Browser custom track)
Alignm length: 568
Alignm identity: 412
Alignm E-value: 0
Alignm gaps (pig, cow): 265, 40

Conread position: 6-552
Cow position: chr5:4385913-4386463 (view UCSC Genome Browser custom track)
Alignm length: 560
Alignm identity: 409
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 126

Conread position: 6-552
Cow position: chr5:12643055-12642523 (view UCSC Genome Browser custom track)
Alignm length: 557
Alignm identity: 412
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 121

Conread position: 6-552
Cow position: chr5:30580000-30580570 (view UCSC Genome Browser custom track)
Alignm length: 573
Alignm identity: 417
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 355

Conread position: 6-552
Cow position: chr5:34697274-34697827 (view UCSC Genome Browser custom track)
Alignm length: 559
Alignm identity: 424
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 291

Conread position: 6-552
Cow position: chr5:37733018-37733575 (view UCSC Genome Browser custom track)
Alignm length: 563
Alignm identity: 410
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 112

Conread position: 6-552
Cow position: chr5:46737903-46737363 (view UCSC Genome Browser custom track)
Alignm length: 559
Alignm identity: 413
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 107

Conread position: 6-552
Cow position: chr5:48808068-48807507 (view UCSC Genome Browser custom track)
Alignm length: 566
Alignm identity: 431
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 185

Conread position: 6-552
Cow position: chr5:49519231-49519782 (view UCSC Genome Browser custom track)
Alignm length: 559
Alignm identity: 420
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 190

Conread position: 6-552
Cow position: chr5:55628662-55629220 (view UCSC Genome Browser custom track)
Alignm length: 561
Alignm identity: 432
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 190

Conread position: 6-552
Cow position: chr5:57481868-57481314 (view UCSC Genome Browser custom track)
Alignm length: 558
Alignm identity: 424
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 190

Conread position: 6-552
Cow position: chr5:59282990-59283542 (view UCSC Genome Browser custom track)
Alignm length: 560
Alignm identity: 419
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 79

Conread position: 6-552
Cow position: chr5:64781345-64780789 (view UCSC Genome Browser custom track)
Alignm length: 559
Alignm identity: 425
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 190

Conread position: 6-552
Cow position: chr5:73488886-73488334 (view UCSC Genome Browser custom track)
Alignm length: 561
Alignm identity: 429
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 87

Conread position: 9-552
Cow position: chr5:24099343-24099887 (view UCSC Genome Browser custom track)
Alignm length: 555
Alignm identity: 423
Alignm E-value: 0
Alignm gaps (pig, cow): 268, 184

Conread position: 10-552
Cow position: chr5:46005178-46004631 (view UCSC Genome Browser custom track)
Alignm length: 558
Alignm identity: 405
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 54

Conread position: 21-552
Cow position: chr5:31100738-31100202 (view UCSC Genome Browser custom track)
Alignm length: 541
Alignm identity: 421
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 135

Conread position: 39-552
Cow position: chr5:10856109-10855591 (view UCSC Genome Browser custom track)
Alignm length: 522
Alignm identity: 382
Alignm E-value: 0
Alignm gaps (pig, cow): 330, 154

Conread position: 39-552
Cow position: chr5:14344711-14344212 (view UCSC Genome Browser custom track)
Alignm length: 521
Alignm identity: 371
Alignm E-value: 0
Alignm gaps (pig, cow): 231, 94

Conread position: 39-552
Cow position: chr5:18885819-18885310 (view UCSC Genome Browser custom track)
Alignm length: 523
Alignm identity: 370
Alignm E-value: 0
Alignm gaps (pig, cow): 160, 65

Conread position: 39-552
Cow position: chr5:46645667-46646180 (view UCSC Genome Browser custom track)
Alignm length: 542
Alignm identity: 380
Alignm E-value: 0
Alignm gaps (pig, cow): 147, 15

Conread position: 82-391
Cow position: chr5:24999236-24998926 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 189, 106

Conread position: 87-552
Cow position: chr5:51309100-51308626 (view UCSC Genome Browser custom track)
Alignm length: 485
Alignm identity: 361
Alignm E-value: 0
Alignm gaps (pig, cow): 189, 77

Conread position: 103-371
Cow position: chr5:27654586-27654850 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 95, 85

Conread position: 104-552
Cow position: chr5:12731939-12731488 (view UCSC Genome Browser custom track)
Alignm length: 459
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 85

Conread position: 107-552
Cow position: chr5:7274625-7275066 (view UCSC Genome Browser custom track)
Alignm length: 456
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 87

Conread position: 111-552
Cow position: chr5:24151564-24152000 (view UCSC Genome Browser custom track)
Alignm length: 450
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 48

Conread position: 114-552
Cow position: chr5:23687109-23686673 (view UCSC Genome Browser custom track)
Alignm length: 447
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 156, 28

Conread position: 150-544
Cow position: chr5:26183661-26184057 (view UCSC Genome Browser custom track)
Alignm length: 406
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 22

Conread position: 155-512
Cow position: chr5:48855038-48855397 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 255
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 116, 136

Conread position: 169-322
Cow position: chr5:32282130-32281975 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 127
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 26, 0

Conread position: 177-552
Cow position: chr5:46777249-46777619 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 68

Conread position: 180-512
Cow position: chr5:27197168-27197498 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 91, 19

Conread position: 203-552
Cow position: chr5:29766999-29767349 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 98

Conread position: 205-531
Cow position: chr5:29434840-29434515 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 238
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 51, 10

Conread position: 210-551
Cow position: chr5:18560526-18560181 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 84

Conread position: 243-552
Cow position: chr5:7143137-7142838 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 204
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 79, 19

Conread position: 258-545
Cow position: chr5:41376976-41376690 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 206
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 18, 40

Conread position: 259-552
Cow position: chr5:40923713-40923420 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 111, 184

Conread position: 270-537
Cow position: chr5:54860984-54860710 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 205
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 49, 260

Conread position: 278-462
Cow position: chr5:44488-44299 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 138
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 91, 0

Conread position: 301-552
Cow position: chr5:10813782-10813524 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 192
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 68, 0

Conread position: 308-552
Cow position: chr5:27003211-27003463 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 191
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 61, 128

Conread position: 315-552
Cow position: chr5:32281783-32281542 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 195
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 129

Conread position: 343-552
Cow position: chr5:61081203-61080990 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 172
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 173

Conread position: 362-552
Cow position: chr5:11115716-11115527 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 136
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 101, 148

Conread position: 367-552
Cow position: chr5:55653805-55653619 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 141
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 96, 143

Conread position: 368-552
Cow position: chr5:52434779-52434967 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 156
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 21, 0

Conread position: 387-552
Cow position: chr5:53945903-53946065 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 129
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 76, 45

Show alignments to all cow chromosomes.