Cow genome map
| Conread name: | Lng1-LNG010007H08 |
| Conread position: | 2-267 |
| Cow position: | chr1:80900122-80899847 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 204 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 36, 239 |
| Conread position: | 3-132 |
| Cow position: | chr1:56618649-56618778 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 106 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-141 |
| Cow position: | chr1:89448901-89448759 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 107 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 3-161 |
| Cow position: | chr1:42175723-42175565 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 121 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 128, 25 |
| Conread position: | 3-182 |
| Cow position: | chr1:24445626-24445805 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 136 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 124, 164 |
| Conread position: | 3-211 |
| Cow position: | chr1:89497958-89497760 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 35, 70 |
| Conread position: | 3-247 |
| Cow position: | chr1:62920169-62919935 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 181 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 22, 97 |
| Conread position: | 3-249 |
| Cow position: | chr1:85162546-85162790 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 187 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 22, 83 |
| Conread position: | 3-255 |
| Cow position: | chr1:71253552-71253804 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 188 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 125, 37 |
| Conread position: | 3-266 |
| Cow position: | chr1:57635463-57635207 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 184 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 127, 0 |
| Conread position: | 3-266 |
| Cow position: | chr1:68817796-68818056 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 205 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 149 |
| Conread position: | 3-267 |
| Cow position: | chr1:12595900-12596164 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 209 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 148 |
| Conread position: | 3-267 |
| Cow position: | chr1:37321997-37322267 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 206 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 181 |
| Conread position: | 3-276 |
| Cow position: | chr1:61564800-61564521 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 212 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 3-279 |
| Cow position: | chr1:71946369-71946643 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 120 |
| Conread position: | 3-279 |
| Cow position: | chr1:98551721-98551444 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 217 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 197 |
| Conread position: | 3-282 |
| Cow position: | chr1:1981112-1981388 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 213 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 93 |
| Conread position: | 3-283 |
| Cow position: | chr1:41004359-41004644 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 219 |
| Conread position: | 3-283 |
| Cow position: | chr1:63434805-63435080 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 204 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 105, 25 |
| Conread position: | 3-310 |
| Cow position: | chr1:84255768-84255450 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 266 |
| Conread position: | 3-334 |
| Cow position: | chr1:58419937-58419600 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 240 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 114, 23 |
| Conread position: | 3-334 |
| Cow position: | chr1:60032598-60032926 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 234 |
| Alignm E-value: | 8.00001e-42 |
| Alignm gaps (pig, cow): | 114, 22 |
| Conread position: | 4-205 |
| Cow position: | chr1:5597208-5597398 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 155 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 26, 61 |
| Conread position: | 4-224 |
| Cow position: | chr1:53671737-53671968 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 172 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 21, 110 |
| Conread position: | 4-283 |
| Cow position: | chr1:53458698-53458428 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 209 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 27, 146 |
| Conread position: | 9-275 |
| Cow position: | chr1:3061589-3061861 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 191 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 22, 253 |
| Conread position: | 12-198 |
| Cow position: | chr1:102113115-102113301 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 146 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 119, 12 |
| Conread position: | 15-252 |
| Cow position: | chr1:81563726-81563487 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 192 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 190 |
| Conread position: | 15-267 |
| Cow position: | chr1:82337791-82338046 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 186 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 116, 190 |
| Conread position: | 16-283 |
| Cow position: | chr1:81472864-81472602 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 184 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 19, 118 |
| Conread position: | 17-244 |
| Cow position: | chr1:51770074-51769847 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 169 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 100, 8 |
| Conread position: | 18-283 |
| Cow position: | chr1:74822433-74822173 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 202 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 110, 8 |
| Conread position: | 19-205 |
| Cow position: | chr1:4414222-4414407 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 147 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 112, 145 |
| Conread position: | 19-224 |
| Cow position: | chr1:69415726-69415936 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 153 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 14, 74 |
| Conread position: | 19-249 |
| Cow position: | chr1:56643603-56643832 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 168 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 14, 73 |
| Conread position: | 20-198 |
| Cow position: | chr1:83072423-83072251 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 142 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 19, 65 |
| Conread position: | 20-249 |
| Cow position: | chr1:71119502-71119268 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 13, 170 |
| Conread position: | 20-266 |
| Cow position: | chr1:2765396-2765157 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 169 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 128, 49 |
| Conread position: | 20-268 |
| Cow position: | chr1:29935402-29935641 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 195 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 109, 44 |
| Conread position: | 20-279 |
| Cow position: | chr1:99807735-99807995 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 187 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 13, 73 |
| Conread position: | 24-252 |
| Cow position: | chr1:53423664-53423432 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 162 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 86, 0 |
| Conread position: | 24-276 |
| Cow position: | chr1:23488525-23488783 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 180 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 12, 78 |
| Conread position: | 24-283 |
| Cow position: | chr1:56225448-56225201 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 198 |
| Alignm E-value: | 8.00001e-42 |
| Alignm gaps (pig, cow): | 11, 121 |
| Conread position: | 26-141 |
| Cow position: | chr1:85301395-85301280 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 96 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 103, 37 |
| Conread position: | 26-248 |
| Cow position: | chr1:7142868-7143091 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 7, 127 |
| Conread position: | 26-249 |
| Cow position: | chr1:78791327-78791550 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 158 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 81, 62 |
| Conread position: | 26-276 |
| Cow position: | chr1:71796935-71797170 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 188 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 101, 58 |
| Conread position: | 30-249 |
| Cow position: | chr1:51836545-51836328 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 77, 55 |
| Conread position: | 30-253 |
| Cow position: | chr1:25793460-25793687 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 169 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 83, 55 |
| Conread position: | 34-266 |
| Cow position: | chr1:74084224-74084449 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 76, 119 |
Show alignments to all cow chromosomes.