Cow genome map
| Conread name: | Lng1-LNG010027H04 |
| Conread position: | 324-603 |
| Cow position: | chr1:21720430-21720713 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 201 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 99, 82 |
| Conread position: | 325-740 |
| Cow position: | chr1:67287051-67287470 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 29 |
| Conread position: | 325-754 |
| Cow position: | chr1:22842859-22843298 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 287 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 77, 241 |
| Conread position: | 326-619 |
| Cow position: | chr1:61737895-61737605 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 199 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 206, 79 |
| Conread position: | 326-741 |
| Cow position: | chr1:40512829-40512405 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 175 |
| Conread position: | 336-754 |
| Cow position: | chr1:86698984-86698558 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 101, 37 |
| Conread position: | 339-745 |
| Cow position: | chr1:57366896-57366475 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 34 |
| Conread position: | 339-754 |
| Cow position: | chr1:49973954-49973531 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 34 |
| Conread position: | 339-754 |
| Cow position: | chr1:63605545-63605119 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 34 |
| Conread position: | 340-555 |
| Cow position: | chr1:86610068-86610288 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 340-754 |
| Cow position: | chr1:72186640-72186222 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 134, 33 |
| Conread position: | 343-555 |
| Cow position: | chr1:38387111-38386897 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 128, 90 |
| Conread position: | 355-740 |
| Cow position: | chr1:30518938-30519339 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 91 |
| Conread position: | 355-753 |
| Cow position: | chr1:55321900-55321485 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 227 |
| Conread position: | 377-684 |
| Cow position: | chr1:23052056-23052378 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 232 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 25, 198 |
| Conread position: | 397-665 |
| Cow position: | chr1:22344208-22344479 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 196 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 7, 183 |
| Conread position: | 401-754 |
| Cow position: | chr1:56144039-56143675 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 9 |
| Conread position: | 405-645 |
| Cow position: | chr1:33712371-33712610 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 189 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 70, 28 |
| Conread position: | 405-754 |
| Cow position: | chr1:57568255-57568593 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 5 |
| Conread position: | 406-751 |
| Cow position: | chr1:58883768-58883409 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 356 |
| Conread position: | 406-753 |
| Cow position: | chr1:102549534-102549890 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 185 |
| Conread position: | 406-754 |
| Cow position: | chr1:3385721-3385360 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 169 |
| Conread position: | 406-754 |
| Cow position: | chr1:30534725-30534361 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 406-754 |
| Cow position: | chr1:48246144-48246489 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 133 |
| Conread position: | 406-754 |
| Cow position: | chr1:65386627-65386989 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 406-754 |
| Cow position: | chr1:73070757-73070393 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 406-754 |
| Cow position: | chr1:79456673-79456313 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 406-754 |
| Cow position: | chr1:93854820-93855176 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 47 |
| Conread position: | 409-754 |
| Cow position: | chr1:76545236-76544879 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 46 |
| Conread position: | 410-754 |
| Cow position: | chr1:76752350-76751989 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 411-754 |
| Cow position: | chr1:69922132-69921778 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 43 |
| Conread position: | 413-754 |
| Cow position: | chr1:39544069-39544426 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 261 |
| Conread position: | 413-754 |
| Cow position: | chr1:95239669-95240025 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 260 |
| Conread position: | 415-754 |
| Cow position: | chr1:80358877-80358524 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 416-746 |
| Cow position: | chr1:69766766-69767111 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 416-746 |
| Cow position: | chr1:86547831-86547490 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 117 |
| Conread position: | 416-750 |
| Cow position: | chr1:18880089-18879741 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 416-750 |
| Cow position: | chr1:40053659-40054007 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 416-750 |
| Cow position: | chr1:53198853-53199203 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 416-753 |
| Cow position: | chr1:56490154-56490507 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 416-754 |
| Cow position: | chr1:8554632-8554988 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 82 |
| Conread position: | 416-754 |
| Cow position: | chr1:20829193-20829546 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 416-754 |
| Cow position: | chr1:21087717-21088070 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 416-754 |
| Cow position: | chr1:33851581-33851942 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 416-754 |
| Cow position: | chr1:40574517-40574870 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 416-754 |
| Cow position: | chr1:40684387-40684040 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 6 |
| Conread position: | 416-754 |
| Cow position: | chr1:57424535-57424184 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 416-754 |
| Cow position: | chr1:67834837-67834484 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 6 |
| Conread position: | 416-754 |
| Cow position: | chr1:71562270-71561916 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 83 |
| Conread position: | 416-754 |
| Cow position: | chr1:82564807-82565160 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 416-754 |
| Cow position: | chr1:82652957-82653322 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 417-746 |
| Cow position: | chr1:29034607-29034943 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 119, 60 |
| Conread position: | 419-746 |
| Cow position: | chr1:69403292-69403635 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 419-751 |
| Cow position: | chr1:52358965-52358619 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 343 |
| Conread position: | 419-754 |
| Cow position: | chr1:11291798-11291451 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 212 |
| Conread position: | 419-754 |
| Cow position: | chr1:28873386-28873737 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 37 |
| Conread position: | 419-754 |
| Cow position: | chr1:85882314-85882656 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 23 |
| Conread position: | 420-746 |
| Cow position: | chr1:79636619-79636315 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 236 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 116, 135 |
| Conread position: | 423-753 |
| Cow position: | chr1:94659999-94660331 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 113 |
| Conread position: | 423-754 |
| Cow position: | chr1:42736769-42737115 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 39 |
| Conread position: | 423-754 |
| Cow position: | chr1:99913734-99914080 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 39 |
| Conread position: | 423-754 |
| Cow position: | chr1:102434722-102434381 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 295 |
| Conread position: | 431-754 |
| Cow position: | chr1:31418190-31417857 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 10 |
| Conread position: | 437-750 |
| Cow position: | chr1:85792012-85792334 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 116 |
| Conread position: | 437-754 |
| Cow position: | chr1:89425899-89426230 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 447-754 |
| Cow position: | chr1:31397026-31397349 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 448-754 |
| Cow position: | chr1:31365746-31365430 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 159 |
| Conread position: | 448-754 |
| Cow position: | chr1:66999363-66999672 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 159 |
| Conread position: | 453-745 |
| Cow position: | chr1:43571060-43570757 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 225 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 22, 44 |
| Conread position: | 456-754 |
| Cow position: | chr1:57657154-57657455 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 24 |
| Conread position: | 458-754 |
| Cow position: | chr1:59209799-59209494 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 6, 14 |
| Conread position: | 463-754 |
| Cow position: | chr1:56163907-56164206 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 12 |
| Conread position: | 475-754 |
| Cow position: | chr1:56723522-56723815 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 144 |
| Conread position: | 479-750 |
| Cow position: | chr1:91751091-91750810 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 496-754 |
| Cow position: | chr1:11860846-11860582 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 201 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 521-754 |
| Cow position: | chr1:55777000-55777241 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 191 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 6, 0 |
| Conread position: | 549-754 |
| Cow position: | chr1:6194684-6194891 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 171 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 162 |
| Conread position: | 549-754 |
| Cow position: | chr1:44044227-44044439 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 168 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 87, 0 |
| Conread position: | 554-754 |
| Cow position: | chr1:9258946-9259153 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 164 |
| Alignm E-value: | 8.00141e-43 |
| Alignm gaps (pig, cow): | 87, 0 |
| Conread position: | 562-754 |
| Cow position: | chr1:1460726-1460546 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 151 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 70, 138 |
| Conread position: | 576-754 |
| Cow position: | chr1:76621211-76621025 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 578-754 |
| Cow position: | chr1:33896216-33896399 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 589-754 |
| Cow position: | chr1:24443835-24443665 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 136 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 590-746 |
| Cow position: | chr1:77117081-77116923 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 129 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 46, 127 |
Show alignments to all cow chromosomes.