Cow genome map
Conread name: | Lng1-LNG010027H04 |
Conread position: | 320-754 |
Cow position: | chr11:10090549-10091000 (view UCSC Genome Browser custom track) |
Alignm length: | 456 |
Alignm identity: | 350 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 82, 41 |
Conread position: | 326-565 |
Cow position: | chr11:9220075-9219839 (view UCSC Genome Browser custom track) |
Alignm length: | 248 |
Alignm identity: | 172 |
Alignm E-value: | 2e-21 |
Alignm gaps (pig, cow): | 81, 28 |
Conread position: | 333-754 |
Cow position: | chr11:58134276-58134712 (view UCSC Genome Browser custom track) |
Alignm length: | 440 |
Alignm identity: | 328 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 73, 34 |
Conread position: | 351-754 |
Cow position: | chr11:31926078-31926490 (view UCSC Genome Browser custom track) |
Alignm length: | 421 |
Alignm identity: | 300 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 19, 63 |
Conread position: | 362-561 |
Cow position: | chr11:8261634-8261423 (view UCSC Genome Browser custom track) |
Alignm length: | 212 |
Alignm identity: | 153 |
Alignm E-value: | 9e-25 |
Alignm gaps (pig, cow): | 33, 0 |
Conread position: | 370-740 |
Cow position: | chr11:62229129-62229492 (view UCSC Genome Browser custom track) |
Alignm length: | 374 |
Alignm identity: | 272 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 158, 77 |
Conread position: | 388-754 |
Cow position: | chr11:29668670-29668291 (view UCSC Genome Browser custom track) |
Alignm length: | 384 |
Alignm identity: | 283 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 12, 52 |
Conread position: | 390-754 |
Cow position: | chr11:28229818-28229440 (view UCSC Genome Browser custom track) |
Alignm length: | 380 |
Alignm identity: | 280 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 10, 282 |
Conread position: | 395-668 |
Cow position: | chr11:33978263-33977974 (view UCSC Genome Browser custom track) |
Alignm length: | 294 |
Alignm identity: | 208 |
Alignm E-value: | 6e-31 |
Alignm gaps (pig, cow): | 76, 12 |
Conread position: | 400-754 |
Cow position: | chr11:84389584-84389949 (view UCSC Genome Browser custom track) |
Alignm length: | 367 |
Alignm identity: | 269 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 74, 313 |
Conread position: | 402-558 |
Cow position: | chr11:30125286-30125124 (view UCSC Genome Browser custom track) |
Alignm length: | 163 |
Alignm identity: | 121 |
Alignm E-value: | 7e-23 |
Alignm gaps (pig, cow): | 72, 0 |
Conread position: | 403-746 |
Cow position: | chr11:31874815-31874460 (view UCSC Genome Browser custom track) |
Alignm length: | 360 |
Alignm identity: | 267 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 11, 20 |
Conread position: | 405-754 |
Cow position: | chr11:24393282-24393640 (view UCSC Genome Browser custom track) |
Alignm length: | 361 |
Alignm identity: | 277 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 69, 29 |
Conread position: | 405-754 |
Cow position: | chr11:76374240-76373898 (view UCSC Genome Browser custom track) |
Alignm length: | 354 |
Alignm identity: | 255 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 129, 30 |
Conread position: | 406-740 |
Cow position: | chr11:41170731-41170382 (view UCSC Genome Browser custom track) |
Alignm length: | 351 |
Alignm identity: | 275 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 21, 57 |
Conread position: | 406-754 |
Cow position: | chr11:10847403-10847768 (view UCSC Genome Browser custom track) |
Alignm length: | 366 |
Alignm identity: | 282 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 24, 0 |
Conread position: | 406-754 |
Cow position: | chr11:38835470-38835109 (view UCSC Genome Browser custom track) |
Alignm length: | 362 |
Alignm identity: | 283 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 21, 0 |
Conread position: | 406-754 |
Cow position: | chr11:44157292-44156928 (view UCSC Genome Browser custom track) |
Alignm length: | 366 |
Alignm identity: | 281 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 21, 50 |
Conread position: | 406-754 |
Cow position: | chr11:44251760-44252117 (view UCSC Genome Browser custom track) |
Alignm length: | 359 |
Alignm identity: | 274 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 45, 87 |
Conread position: | 406-754 |
Cow position: | chr11:85393850-85393487 (view UCSC Genome Browser custom track) |
Alignm length: | 365 |
Alignm identity: | 282 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 21, 164 |
Conread position: | 412-746 |
Cow position: | chr11:43514665-43514320 (view UCSC Genome Browser custom track) |
Alignm length: | 349 |
Alignm identity: | 285 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 15, 32 |
Conread position: | 413-753 |
Cow position: | chr11:5343256-5342900 (view UCSC Genome Browser custom track) |
Alignm length: | 357 |
Alignm identity: | 262 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 26, 0 |
Conread position: | 416-746 |
Cow position: | chr11:9734698-9734351 (view UCSC Genome Browser custom track) |
Alignm length: | 348 |
Alignm identity: | 266 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 22, 0 |
Conread position: | 416-750 |
Cow position: | chr11:67846606-67846257 (view UCSC Genome Browser custom track) |
Alignm length: | 350 |
Alignm identity: | 266 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 22, 0 |
Conread position: | 416-754 |
Cow position: | chr11:3492976-3493315 (view UCSC Genome Browser custom track) |
Alignm length: | 352 |
Alignm identity: | 262 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 23, 6 |
Conread position: | 416-754 |
Cow position: | chr11:15983589-15983943 (view UCSC Genome Browser custom track) |
Alignm length: | 355 |
Alignm identity: | 268 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 22, 0 |
Conread position: | 416-754 |
Cow position: | chr11:19064284-19063932 (view UCSC Genome Browser custom track) |
Alignm length: | 354 |
Alignm identity: | 270 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 22, 250 |
Conread position: | 416-754 |
Cow position: | chr11:28108115-28108468 (view UCSC Genome Browser custom track) |
Alignm length: | 355 |
Alignm identity: | 270 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 23, 6 |
Conread position: | 416-754 |
Cow position: | chr11:33194588-33194237 (view UCSC Genome Browser custom track) |
Alignm length: | 354 |
Alignm identity: | 259 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 19, 172 |
Conread position: | 416-754 |
Cow position: | chr11:36744215-36743863 (view UCSC Genome Browser custom track) |
Alignm length: | 354 |
Alignm identity: | 268 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 19, 82 |
Conread position: | 416-754 |
Cow position: | chr11:52419353-52419714 (view UCSC Genome Browser custom track) |
Alignm length: | 363 |
Alignm identity: | 256 |
Alignm E-value: | 8.40779e-45 |
Alignm gaps (pig, cow): | 22, 304 |
Conread position: | 416-754 |
Cow position: | chr11:61401086-61400742 (view UCSC Genome Browser custom track) |
Alignm length: | 351 |
Alignm identity: | 253 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 19, 234 |
Conread position: | 416-754 |
Cow position: | chr11:64045963-64046316 (view UCSC Genome Browser custom track) |
Alignm length: | 354 |
Alignm identity: | 264 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 19, 0 |
Conread position: | 416-754 |
Cow position: | chr11:73477273-73477626 (view UCSC Genome Browser custom track) |
Alignm length: | 354 |
Alignm identity: | 266 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 19, 0 |
Conread position: | 418-754 |
Cow position: | chr11:46246589-46246231 (view UCSC Genome Browser custom track) |
Alignm length: | 360 |
Alignm identity: | 266 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 20, 250 |
Conread position: | 419-744 |
Cow position: | chr11:9157180-9156845 (view UCSC Genome Browser custom track) |
Alignm length: | 337 |
Alignm identity: | 258 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 16, 210 |
Conread position: | 419-754 |
Cow position: | chr11:4027589-4027242 (view UCSC Genome Browser custom track) |
Alignm length: | 351 |
Alignm identity: | 266 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 18, 143 |
Conread position: | 419-754 |
Cow position: | chr11:28054625-28054291 (view UCSC Genome Browser custom track) |
Alignm length: | 346 |
Alignm identity: | 259 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 8, 75 |
Conread position: | 420-754 |
Cow position: | chr11:12358448-12358099 (view UCSC Genome Browser custom track) |
Alignm length: | 351 |
Alignm identity: | 279 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 17, 35 |
Conread position: | 422-753 |
Cow position: | chr11:9606603-9606260 (view UCSC Genome Browser custom track) |
Alignm length: | 345 |
Alignm identity: | 255 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 13, 147 |
Conread position: | 423-753 |
Cow position: | chr11:53432087-53431742 (view UCSC Genome Browser custom track) |
Alignm length: | 346 |
Alignm identity: | 277 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 16, 0 |
Conread position: | 426-750 |
Cow position: | chr11:22934784-22935110 (view UCSC Genome Browser custom track) |
Alignm length: | 335 |
Alignm identity: | 242 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 110, 56 |
Conread position: | 426-754 |
Cow position: | chr11:26124949-26124609 (view UCSC Genome Browser custom track) |
Alignm length: | 342 |
Alignm identity: | 271 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 13, 295 |
Conread position: | 437-754 |
Cow position: | chr11:57628059-57627720 (view UCSC Genome Browser custom track) |
Alignm length: | 341 |
Alignm identity: | 258 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 37, 76 |
Conread position: | 449-754 |
Cow position: | chr11:17107687-17107369 (view UCSC Genome Browser custom track) |
Alignm length: | 320 |
Alignm identity: | 250 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 25, 166 |
Conread position: | 474-750 |
Cow position: | chr11:20734214-20733928 (view UCSC Genome Browser custom track) |
Alignm length: | 287 |
Alignm identity: | 225 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 62, 0 |
Conread position: | 474-754 |
Cow position: | chr11:64082055-64081765 (view UCSC Genome Browser custom track) |
Alignm length: | 291 |
Alignm identity: | 229 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 62, 0 |
Conread position: | 479-746 |
Cow position: | chr11:7116253-7116528 (view UCSC Genome Browser custom track) |
Alignm length: | 280 |
Alignm identity: | 212 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 76, 53 |
Conread position: | 479-754 |
Cow position: | chr11:40775961-40775678 (view UCSC Genome Browser custom track) |
Alignm length: | 286 |
Alignm identity: | 225 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 57, 111 |
Conread position: | 483-754 |
Cow position: | chr11:63655300-63655019 (view UCSC Genome Browser custom track) |
Alignm length: | 282 |
Alignm identity: | 226 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 53, 0 |
Conread position: | 509-754 |
Cow position: | chr11:71329658-71329910 (view UCSC Genome Browser custom track) |
Alignm length: | 253 |
Alignm identity: | 208 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 27, 0 |
Conread position: | 532-754 |
Cow position: | chr11:53287077-53286847 (view UCSC Genome Browser custom track) |
Alignm length: | 231 |
Alignm identity: | 178 |
Alignm E-value: | 8.40779e-45 |
Alignm gaps (pig, cow): | 23, 0 |
Conread position: | 549-745 |
Cow position: | chr11:45922505-45922312 (view UCSC Genome Browser custom track) |
Alignm length: | 200 |
Alignm identity: | 144 |
Alignm E-value: | 3e-26 |
Alignm gaps (pig, cow): | 164, 70 |
Conread position: | 557-745 |
Cow position: | chr11:10051837-10052031 (view UCSC Genome Browser custom track) |
Alignm length: | 197 |
Alignm identity: | 147 |
Alignm E-value: | 5e-29 |
Alignm gaps (pig, cow): | 79, 118 |
Conread position: | 561-754 |
Cow position: | chr11:44492152-44491954 (view UCSC Genome Browser custom track) |
Alignm length: | 200 |
Alignm identity: | 155 |
Alignm E-value: | 1e-37 |
Alignm gaps (pig, cow): | 70, 93 |
Conread position: | 577-754 |
Cow position: | chr11:17546301-17546485 (view UCSC Genome Browser custom track) |
Alignm length: | 185 |
Alignm identity: | 142 |
Alignm E-value: | 2e-33 |
Alignm gaps (pig, cow): | 59, 0 |
Conread position: | 640-750 |
Cow position: | chr11:37476798-37476684 (view UCSC Genome Browser custom track) |
Alignm length: | 115 |
Alignm identity: | 97 |
Alignm E-value: | 1e-25 |
Alignm gaps (pig, cow): | 72, 0 |
Show alignments to all cow chromosomes.