Cow genome map
| Conread name: | Lng1-LNG010027H04 |
| Conread position: | 325-745 |
| Cow position: | chr5:41528760-41528333 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 112, 29 |
| Conread position: | 331-754 |
| Cow position: | chr5:39247001-39246569 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 150, 30 |
| Conread position: | 337-576 |
| Cow position: | chr5:41961927-41961688 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 182 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 138, 64 |
| Conread position: | 339-754 |
| Cow position: | chr5:30579336-30579762 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 34 |
| Conread position: | 355-746 |
| Cow position: | chr5:46660068-46660460 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 215 |
| Conread position: | 400-754 |
| Cow position: | chr5:18663857-18664226 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 6, 232 |
| Conread position: | 402-754 |
| Cow position: | chr5:46738504-46738139 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 52 |
| Conread position: | 405-753 |
| Cow position: | chr5:4385331-4385677 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 131, 32 |
| Conread position: | 406-746 |
| Cow position: | chr5:2914525-2914877 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 226 |
| Conread position: | 406-754 |
| Cow position: | chr5:415645-415282 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 214 |
| Conread position: | 406-754 |
| Cow position: | chr5:54792558-54792202 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 88 |
| Conread position: | 406-754 |
| Cow position: | chr5:55628063-55628426 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 50 |
| Conread position: | 406-754 |
| Cow position: | chr5:57482469-57482104 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 416-754 |
| Cow position: | chr5:3964533-3964884 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 6 |
| Conread position: | 416-754 |
| Cow position: | chr5:4089152-4089505 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 416-754 |
| Cow position: | chr5:6588939-6588585 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 190 |
| Conread position: | 416-754 |
| Cow position: | chr5:10482929-10483282 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 416-754 |
| Cow position: | chr5:18122387-18122042 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 93 |
| Conread position: | 416-754 |
| Cow position: | chr5:32772563-32772927 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 227 |
| Conread position: | 416-754 |
| Cow position: | chr5:44459564-44459917 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 416-754 |
| Cow position: | chr5:46776161-46776513 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 81 |
| Conread position: | 416-754 |
| Cow position: | chr5:48468198-48467846 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 419-754 |
| Cow position: | chr5:7273918-7274266 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 23 |
| Conread position: | 419-754 |
| Cow position: | chr5:31101535-31101190 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 257 |
| Conread position: | 419-754 |
| Cow position: | chr5:64781928-64781577 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 37 |
| Conread position: | 420-754 |
| Cow position: | chr5:34696696-34697038 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 28 |
| Conread position: | 426-754 |
| Cow position: | chr5:73489463-73489123 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 427-754 |
| Cow position: | chr5:37732445-37732786 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 437-754 |
| Cow position: | chr5:4019095-4018765 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 437-754 |
| Cow position: | chr5:23960212-23959881 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 445-754 |
| Cow position: | chr5:27909161-27908838 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 447-754 |
| Cow position: | chr5:10776151-10775830 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 447-754 |
| Cow position: | chr5:14380262-14380577 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 89 |
| Conread position: | 447-754 |
| Cow position: | chr5:18666107-18666428 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 184 |
| Conread position: | 458-754 |
| Cow position: | chr5:2531388-2531689 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 200 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 267 |
| Conread position: | 474-754 |
| Cow position: | chr5:4069365-4069655 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 474-754 |
| Cow position: | chr5:12643575-12643285 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 19 |
| Conread position: | 474-754 |
| Cow position: | chr5:24098818-24099107 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 149 |
| Conread position: | 474-754 |
| Cow position: | chr5:35300243-35300533 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 512-754 |
| Cow position: | chr5:241385-241636 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 198 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 5 |
| Conread position: | 578-754 |
| Cow position: | chr5:46807563-46807746 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 585-754 |
| Cow position: | chr5:26343260-26343435 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 51, 41 |
| Conread position: | 590-754 |
| Cow position: | chr5:4757901-4757729 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 602-754 |
| Cow position: | chr5:1341756-1341597 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 129 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 608-754 |
| Cow position: | chr5:45181863-45181710 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 123 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 644-754 |
| Cow position: | chr5:44784593-44784479 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 92 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 647-754 |
| Cow position: | chr5:38073356-38073466 (view UCSC Genome Browser custom track) |
| Alignm length: | 112 |
| Alignm identity: | 94 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 68, 8 |
Show alignments to all cow chromosomes.