Cow genome map
| Conread name: | Lng1-LNG010027H04 |
| Conread position: | 333-754 |
| Cow position: | chr6:3277800-3277380 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 106, 40 |
| Conread position: | 336-695 |
| Cow position: | chr6:33995173-33994808 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 250 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 115, 25 |
| Conread position: | 339-754 |
| Cow position: | chr6:3889323-3888906 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 31 |
| Conread position: | 339-754 |
| Cow position: | chr6:10643698-10644115 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 109 |
| Conread position: | 354-573 |
| Cow position: | chr6:6475994-6475764 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 48, 14 |
| Conread position: | 383-754 |
| Cow position: | chr6:65928159-65928547 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 24 |
| Conread position: | 399-754 |
| Cow position: | chr6:1822418-1822051 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 6 |
| Conread position: | 400-746 |
| Cow position: | chr6:6566832-6567162 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 136, 45 |
| Conread position: | 406-754 |
| Cow position: | chr6:913872-914211 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 254 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 31, 88 |
| Conread position: | 406-754 |
| Cow position: | chr6:5949560-5949198 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 406-754 |
| Cow position: | chr6:8761086-8760723 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 219 |
| Conread position: | 406-754 |
| Cow position: | chr6:20560893-20560530 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 57 |
| Conread position: | 406-754 |
| Cow position: | chr6:27529788-27529425 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 50 |
| Conread position: | 406-754 |
| Cow position: | chr6:35876499-35876137 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 412-754 |
| Cow position: | chr6:17046278-17046636 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 416-754 |
| Cow position: | chr6:10499501-10499148 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 416-754 |
| Cow position: | chr6:17598056-17597715 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 123 |
| Conread position: | 416-754 |
| Cow position: | chr6:24323158-24322805 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 416-754 |
| Cow position: | chr6:39908750-39909103 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 416-754 |
| Cow position: | chr6:44150333-44149980 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 416-754 |
| Cow position: | chr6:69221987-69221634 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 419-746 |
| Cow position: | chr6:24239297-24239625 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 29 |
| Conread position: | 419-754 |
| Cow position: | chr6:13104285-13104633 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 155 |
| Conread position: | 419-754 |
| Cow position: | chr6:40867329-40866984 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 300 |
| Conread position: | 419-754 |
| Cow position: | chr6:58026985-58027330 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 142 |
| Conread position: | 420-752 |
| Cow position: | chr6:13317270-13316928 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 89, 72 |
| Conread position: | 420-754 |
| Cow position: | chr6:331237-330890 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 13 |
| Conread position: | 421-754 |
| Cow position: | chr6:13944134-13944483 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 78 |
| Conread position: | 423-750 |
| Cow position: | chr6:39437784-39438117 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 43 |
| Conread position: | 423-754 |
| Cow position: | chr6:15140943-15140606 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 18 |
| Conread position: | 423-754 |
| Cow position: | chr6:15280315-15279980 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 18 |
| Conread position: | 423-754 |
| Cow position: | chr6:30274942-30274601 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 296 |
| Conread position: | 437-754 |
| Cow position: | chr6:40251908-40252237 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 56 |
| Conread position: | 442-754 |
| Cow position: | chr6:28105597-28105277 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 67 |
| Conread position: | 445-754 |
| Cow position: | chr6:2374953-2375277 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 445-754 |
| Cow position: | chr6:27169834-27170156 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 447-750 |
| Cow position: | chr6:1411685-1411371 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 448-754 |
| Cow position: | chr6:40275344-40275664 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 454-746 |
| Cow position: | chr6:30479371-30479673 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 265 |
| Conread position: | 458-754 |
| Cow position: | chr6:26670596-26670292 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 13 |
| Conread position: | 459-750 |
| Cow position: | chr6:14852310-14852005 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 38 |
| Conread position: | 469-754 |
| Cow position: | chr6:7141179-7140886 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 31 |
| Conread position: | 470-754 |
| Cow position: | chr6:11724822-11724531 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 196 |
| Conread position: | 470-754 |
| Cow position: | chr6:43793428-43793133 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 214 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 66, 121 |
| Conread position: | 474-753 |
| Cow position: | chr6:16052165-16052455 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 474-753 |
| Cow position: | chr6:28063622-28063910 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 193 |
| Conread position: | 474-754 |
| Cow position: | chr6:12666027-12665743 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 82 |
| Conread position: | 485-754 |
| Cow position: | chr6:38233137-38233412 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 216 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 94 |
| Conread position: | 486-754 |
| Cow position: | chr6:21972956-21973233 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 542-753 |
| Cow position: | chr6:3488061-3487847 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 174 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 29 |
| Conread position: | 546-754 |
| Cow position: | chr6:186109-185893 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 173 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 568-751 |
| Cow position: | chr6:6475483-6475299 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 150 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 70, 32 |
| Conread position: | 572-754 |
| Cow position: | chr6:51714091-51714276 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 150 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 72, 85 |
| Conread position: | 579-750 |
| Cow position: | chr6:40326286-40326110 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 62, 8 |
| Conread position: | 601-753 |
| Cow position: | chr6:702328-702488 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 128 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 645-753 |
| Cow position: | chr6:28491102-28490990 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 93 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 652-754 |
| Cow position: | chr6:43999531-43999637 (view UCSC Genome Browser custom track) |
| Alignm length: | 107 |
| Alignm identity: | 88 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 659-754 |
| Cow position: | chr6:28703842-28703743 (view UCSC Genome Browser custom track) |
| Alignm length: | 100 |
| Alignm identity: | 85 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 56, 0 |
Show alignments to all cow chromosomes.