Cow genome map

Conread name: Lng1-LNG010027H04

Conread position: 174-754
Cow position: chrX:29173937-29173350 (view UCSC Genome Browser custom track)
Alignm length: 588
Alignm identity: 112
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 462, 0

Conread position: 323-750
Cow position: chrX:30179023-30178580 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 80

Conread position: 324-745
Cow position: chrX:13417445-13417022 (view UCSC Genome Browser custom track)
Alignm length: 436
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 38

Conread position: 325-727
Cow position: chrX:13053001-13053404 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 91, 82

Conread position: 335-754
Cow position: chrX:6282765-6282342 (view UCSC Genome Browser custom track)
Alignm length: 434
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 135

Conread position: 336-754
Cow position: chrX:2482653-2482218 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 104

Conread position: 350-728
Cow position: chrX:44387118-44387513 (view UCSC Genome Browser custom track)
Alignm length: 399
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 263

Conread position: 351-754
Cow position: chrX:2536460-2536035 (view UCSC Genome Browser custom track)
Alignm length: 426
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 0

Conread position: 351-754
Cow position: chrX:20697088-20696688 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 10

Conread position: 355-745
Cow position: chrX:17667895-17667493 (view UCSC Genome Browser custom track)
Alignm length: 406
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 338

Conread position: 365-754
Cow position: chrX:18534502-18534881 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 271
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 166, 99

Conread position: 385-750
Cow position: chrX:22610974-22611353 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 0

Conread position: 387-746
Cow position: chrX:29285469-29285844 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 236

Conread position: 390-754
Cow position: chrX:22525576-22525193 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 0

Conread position: 406-746
Cow position: chrX:21829578-21829934 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 50

Conread position: 406-754
Cow position: chrX:16699354-16699718 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 0

Conread position: 406-754
Cow position: chrX:23041069-23040711 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 36

Conread position: 406-754
Cow position: chrX:29794062-29793711 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 130, 48

Conread position: 411-754
Cow position: chrX:29096262-29096619 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 21

Conread position: 415-754
Cow position: chrX:3421128-3420779 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 206

Conread position: 415-754
Cow position: chrX:13413076-13412721 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 0

Conread position: 415-754
Cow position: chrX:24089460-24089813 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 38

Conread position: 416-745
Cow position: chrX:21490256-21490598 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 6

Conread position: 416-746
Cow position: chrX:28634358-28634015 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 258

Conread position: 416-750
Cow position: chrX:2101917-2102265 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 179

Conread position: 416-750
Cow position: chrX:16812537-16812188 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 0

Conread position: 416-750
Cow position: chrX:21304468-21304118 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 0

Conread position: 416-750
Cow position: chrX:28758583-28758226 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 0

Conread position: 416-754
Cow position: chrX:2604106-2604459 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 0

Conread position: 416-754
Cow position: chrX:8479707-8480061 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 0

Conread position: 416-754
Cow position: chrX:14594829-14595182 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 0

Conread position: 416-754
Cow position: chrX:16363066-16362713 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 0

Conread position: 416-754
Cow position: chrX:30055678-30055324 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 0

Conread position: 416-754
Cow position: chrX:32067098-32066751 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 143

Conread position: 416-754
Cow position: chrX:35529920-35530273 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 0

Conread position: 416-754
Cow position: chrX:37849072-37849424 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 256

Conread position: 417-754
Cow position: chrX:6873014-6872662 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 0

Conread position: 417-754
Cow position: chrX:30011098-30011450 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 5

Conread position: 419-754
Cow position: chrX:970834-971186 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 0

Conread position: 419-754
Cow position: chrX:20315993-20315651 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 112

Conread position: 419-754
Cow position: chrX:23019391-23019740 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 274

Conread position: 419-754
Cow position: chrX:29853502-29853154 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 290

Conread position: 419-754
Cow position: chrX:29885050-29885404 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 0

Conread position: 420-754
Cow position: chrX:9125417-9125774 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 255

Conread position: 420-754
Cow position: chrX:26528046-26528389 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 34

Conread position: 421-754
Cow position: chrX:1833889-1834229 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 59

Conread position: 423-754
Cow position: chrX:15127170-15126825 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 0

Conread position: 437-740
Cow position: chrX:31493500-31493817 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 0

Conread position: 437-750
Cow position: chrX:13076617-13076290 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 0

Conread position: 437-750
Cow position: chrX:13097191-13096864 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 0

Conread position: 437-754
Cow position: chrX:2562777-2562446 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 59

Conread position: 437-754
Cow position: chrX:7093678-7094009 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 0

Conread position: 437-754
Cow position: chrX:13398040-13397709 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 0

Conread position: 437-754
Cow position: chrX:26400097-26399770 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 256

Conread position: 437-754
Cow position: chrX:27426240-27425909 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 0

Conread position: 437-754
Cow position: chrX:30173591-30173260 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 60

Conread position: 438-754
Cow position: chrX:10531477-10531147 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 0

Conread position: 445-754
Cow position: chrX:12654672-12654351 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 0

Conread position: 445-754
Cow position: chrX:28585068-28585391 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 0

Conread position: 447-746
Cow position: chrX:11464912-11464599 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 0

Conread position: 447-746
Cow position: chrX:31198538-31198850 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 6

Conread position: 447-753
Cow position: chrX:5394911-5394591 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 155

Conread position: 447-753
Cow position: chrX:7481722-7482042 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 0

Conread position: 447-754
Cow position: chrX:12280180-12279859 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 0

Conread position: 447-754
Cow position: chrX:12343046-12343365 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 141

Conread position: 447-754
Cow position: chrX:12353330-12353651 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 0

Conread position: 447-754
Cow position: chrX:18219487-18219808 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 0

Conread position: 447-754
Cow position: chrX:39563841-39563522 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 254

Conread position: 448-753
Cow position: chrX:8588269-8588588 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 0

Conread position: 448-754
Cow position: chrX:15179340-15179014 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 0

Conread position: 449-746
Cow position: chrX:15980858-15980553 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 273

Conread position: 455-754
Cow position: chrX:29950486-29950170 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 0

Conread position: 458-754
Cow position: chrX:3376011-3375701 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 0

Conread position: 470-754
Cow position: chrX:20720107-20720401 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 0

Conread position: 474-754
Cow position: chrX:9008459-9008749 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 0

Conread position: 474-754
Cow position: chrX:11149196-11148922 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 149

Conread position: 474-754
Cow position: chrX:12288273-12287992 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 205

Conread position: 479-753
Cow position: chrX:22582600-22582327 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 208
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 20, 13

Conread position: 479-754
Cow position: chrX:29911299-29911014 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 0

Conread position: 480-754
Cow position: chrX:21579603-21579879 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 106

Conread position: 485-754
Cow position: chrX:16237915-16238194 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 0

Conread position: 496-754
Cow position: chrX:41851050-41850783 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 206

Conread position: 497-746
Cow position: chrX:30711734-30711993 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 217
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 0

Conread position: 498-754
Cow position: chrX:507186-506920 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 0

Conread position: 519-746
Cow position: chrX:34553296-34553531 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 188
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 14, 67

Conread position: 549-750
Cow position: chrX:982861-983069 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 161
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 87, 0

Conread position: 550-754
Cow position: chrX:27987624-27987411 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 157
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 81, 0

Conread position: 554-754
Cow position: chrX:6242448-6242236 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 155
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 78, 72

Conread position: 554-754
Cow position: chrX:31187018-31186813 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 154
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 82, 32

Conread position: 557-754
Cow position: chrX:12182936-12183140 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 155
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 58, 13

Conread position: 562-754
Cow position: chrX:41411396-41411595 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 154
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 74, 0

Conread position: 563-754
Cow position: chrX:16016210-16016015 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 147
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 73, 139

Conread position: 567-754
Cow position: chrX:27624213-27624407 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 152
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 69, 0

Conread position: 578-753
Cow position: chrX:16275878-16276059 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 143
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 58, 122

Conread position: 578-754
Cow position: chrX:15599199-15599377 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 148
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 56, 139

Conread position: 580-753
Cow position: chrX:5283547-5283367 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 146
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 56, 0

Conread position: 590-752
Cow position: chrX:18953528-18953359 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 134
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 46, 29

Conread position: 600-754
Cow position: chrX:24325325-24325168 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 121
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 36, 0

Conread position: 601-753
Cow position: chrX:3084869-3084712 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 121
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 35, 0

Conread position: 615-754
Cow position: chrX:17478160-17478014 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 113
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 21, 0

Show alignments to all cow chromosomes.