Cow genome map
| Conread name: | Lng1-LNG010059B05 |
| Conread position: | 16-771 |
| Cow position: | chr11:66727243-66728015 (view UCSC Genome Browser custom track) |
| Alignm length: | 784 |
| Alignm identity: | 549 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 80 |
| Conread position: | 24-486 |
| Cow position: | chr11:28063720-28064181 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 11 |
| Conread position: | 44-771 |
| Cow position: | chr11:28229854-28229118 (view UCSC Genome Browser custom track) |
| Alignm length: | 747 |
| Alignm identity: | 537 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 32 |
| Conread position: | 44-773 |
| Cow position: | chr11:10090575-10091319 (view UCSC Genome Browser custom track) |
| Alignm length: | 754 |
| Alignm identity: | 575 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 9 |
| Conread position: | 67-660 |
| Cow position: | chr11:62229129-62229709 (view UCSC Genome Browser custom track) |
| Alignm length: | 600 |
| Alignm identity: | 449 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 152, 25 |
| Conread position: | 78-773 |
| Cow position: | chr11:4027617-4026920 (view UCSC Genome Browser custom track) |
| Alignm length: | 713 |
| Alignm identity: | 526 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 19 |
| Conread position: | 93-426 |
| Cow position: | chr11:11677310-11677641 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 42 |
| Conread position: | 98-221 |
| Cow position: | chr11:256224-256099 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 104 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 34, 7 |
| Conread position: | 98-773 |
| Cow position: | chr11:31926134-31926810 (view UCSC Genome Browser custom track) |
| Alignm length: | 688 |
| Alignm identity: | 497 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 48 |
| Conread position: | 99-726 |
| Cow position: | chr11:67866710-67866052 (view UCSC Genome Browser custom track) |
| Alignm length: | 671 |
| Alignm identity: | 433 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 28, 9 |
| Conread position: | 99-771 |
| Cow position: | chr11:10847406-10848089 (view UCSC Genome Browser custom track) |
| Alignm length: | 690 |
| Alignm identity: | 517 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 23 |
| Conread position: | 99-773 |
| Cow position: | chr11:11988071-11988752 (view UCSC Genome Browser custom track) |
| Alignm length: | 689 |
| Alignm identity: | 527 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 23 |
| Conread position: | 99-773 |
| Cow position: | chr11:12358461-12357775 (view UCSC Genome Browser custom track) |
| Alignm length: | 691 |
| Alignm identity: | 529 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 48 |
| Conread position: | 99-773 |
| Cow position: | chr11:19102522-19101855 (view UCSC Genome Browser custom track) |
| Alignm length: | 685 |
| Alignm identity: | 509 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 6 |
| Conread position: | 99-773 |
| Cow position: | chr11:23877266-23877935 (view UCSC Genome Browser custom track) |
| Alignm length: | 687 |
| Alignm identity: | 511 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 39 |
| Conread position: | 99-773 |
| Cow position: | chr11:24393281-24393956 (view UCSC Genome Browser custom track) |
| Alignm length: | 686 |
| Alignm identity: | 512 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 410 |
| Conread position: | 99-773 |
| Cow position: | chr11:26124967-26124286 (view UCSC Genome Browser custom track) |
| Alignm length: | 688 |
| Alignm identity: | 516 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 23 |
| Conread position: | 99-773 |
| Cow position: | chr11:28054635-28053971 (view UCSC Genome Browser custom track) |
| Alignm length: | 691 |
| Alignm identity: | 508 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 23 |
| Conread position: | 99-773 |
| Cow position: | chr11:38835467-38834795 (view UCSC Genome Browser custom track) |
| Alignm length: | 687 |
| Alignm identity: | 518 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 23 |
| Conread position: | 99-773 |
| Cow position: | chr11:41170728-41170055 (view UCSC Genome Browser custom track) |
| Alignm length: | 687 |
| Alignm identity: | 510 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 23 |
| Conread position: | 99-773 |
| Cow position: | chr11:44157289-44156607 (view UCSC Genome Browser custom track) |
| Alignm length: | 690 |
| Alignm identity: | 519 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 23 |
| Conread position: | 99-773 |
| Cow position: | chr11:44251763-44252436 (view UCSC Genome Browser custom track) |
| Alignm length: | 689 |
| Alignm identity: | 505 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 6 |
| Conread position: | 99-773 |
| Cow position: | chr11:53432102-53431418 (view UCSC Genome Browser custom track) |
| Alignm length: | 693 |
| Alignm identity: | 526 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 23 |
| Conread position: | 99-773 |
| Cow position: | chr11:58134351-58135034 (view UCSC Genome Browser custom track) |
| Alignm length: | 690 |
| Alignm identity: | 525 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 23 |
| Conread position: | 100-591 |
| Cow position: | chr11:84389589-84390097 (view UCSC Genome Browser custom track) |
| Alignm length: | 510 |
| Alignm identity: | 385 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 254 |
| Conread position: | 100-773 |
| Cow position: | chr11:76374240-76373579 (view UCSC Genome Browser custom track) |
| Alignm length: | 685 |
| Alignm identity: | 487 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 92 |
| Conread position: | 105-247 |
| Cow position: | chr11:8267573-8267425 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 115 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 105-247 |
| Cow position: | chr11:12351096-12350951 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 116 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 37, 50 |
| Conread position: | 105-273 |
| Cow position: | chr11:54209581-54209751 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 129 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 62, 125 |
| Conread position: | 105-485 |
| Cow position: | chr11:22934770-22935149 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 87 |
| Conread position: | 105-773 |
| Cow position: | chr11:9157185-9156517 (view UCSC Genome Browser custom track) |
| Alignm length: | 680 |
| Alignm identity: | 499 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 11 |
| Conread position: | 106-773 |
| Cow position: | chr11:12093530-12094206 (view UCSC Genome Browser custom track) |
| Alignm length: | 688 |
| Alignm identity: | 514 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 128, 15 |
| Conread position: | 108-773 |
| Cow position: | chr11:43514661-43513992 (view UCSC Genome Browser custom track) |
| Alignm length: | 678 |
| Alignm identity: | 508 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 21 |
| Conread position: | 114-481 |
| Cow position: | chr11:17326248-17326610 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 235 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 129, 7 |
| Conread position: | 114-769 |
| Cow position: | chr11:31874800-31874151 (view UCSC Genome Browser custom track) |
| Alignm length: | 672 |
| Alignm identity: | 497 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 173 |
| Conread position: | 115-251 |
| Cow position: | chr11:30125266-30125127 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 112 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 116-562 |
| Cow position: | chr11:9606601-9606148 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 113, 144 |
| Conread position: | 119-771 |
| Cow position: | chr11:3492985-3493633 (view UCSC Genome Browser custom track) |
| Alignm length: | 669 |
| Alignm identity: | 481 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 190 |
| Conread position: | 119-771 |
| Cow position: | chr11:67846597-67845931 (view UCSC Genome Browser custom track) |
| Alignm length: | 671 |
| Alignm identity: | 485 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 497 |
| Conread position: | 121-773 |
| Cow position: | chr11:85393826-85393174 (view UCSC Genome Browser custom track) |
| Alignm length: | 667 |
| Alignm identity: | 505 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 138 |
| Conread position: | 127-771 |
| Cow position: | chr11:73477292-73477947 (view UCSC Genome Browser custom track) |
| Alignm length: | 659 |
| Alignm identity: | 487 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 485 |
| Conread position: | 127-773 |
| Cow position: | chr11:1496090-1495448 (view UCSC Genome Browser custom track) |
| Alignm length: | 661 |
| Alignm identity: | 474 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 38 |
| Conread position: | 128-444 |
| Cow position: | chr11:8245300-8245624 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 130-772 |
| Cow position: | chr11:46246568-46245920 (view UCSC Genome Browser custom track) |
| Alignm length: | 667 |
| Alignm identity: | 482 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 197, 41 |
| Conread position: | 137-771 |
| Cow position: | chr11:9734669-9734041 (view UCSC Genome Browser custom track) |
| Alignm length: | 647 |
| Alignm identity: | 471 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 322 |
| Conread position: | 137-771 |
| Cow position: | chr11:28108144-28108775 (view UCSC Genome Browser custom track) |
| Alignm length: | 645 |
| Alignm identity: | 470 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 347 |
| Conread position: | 155-672 |
| Cow position: | chr11:7116231-7116763 (view UCSC Genome Browser custom track) |
| Alignm length: | 543 |
| Alignm identity: | 396 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 6, 75 |
| Conread position: | 173-773 |
| Cow position: | chr11:40775962-40775371 (view UCSC Genome Browser custom track) |
| Alignm length: | 609 |
| Alignm identity: | 459 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 112 |
| Conread position: | 176-594 |
| Cow position: | chr11:25866860-25866478 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 282 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 53, 23 |
| Conread position: | 187-773 |
| Cow position: | chr11:36762809-36763391 (view UCSC Genome Browser custom track) |
| Alignm length: | 596 |
| Alignm identity: | 395 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 140 |
| Conread position: | 192-766 |
| Cow position: | chr11:42432203-42432768 (view UCSC Genome Browser custom track) |
| Alignm length: | 587 |
| Alignm identity: | 416 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 54 |
| Conread position: | 202-773 |
| Cow position: | chr11:71329656-71330230 (view UCSC Genome Browser custom track) |
| Alignm length: | 584 |
| Alignm identity: | 435 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 213 |
| Conread position: | 237-673 |
| Cow position: | chr11:44492174-44491735 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 97 |
| Conread position: | 276-773 |
| Cow position: | chr11:9216934-9216442 (view UCSC Genome Browser custom track) |
| Alignm length: | 512 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 87 |
| Conread position: | 378-771 |
| Cow position: | chr11:47760037-47759645 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 8 |
| Conread position: | 380-751 |
| Cow position: | chr11:27670083-27669714 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 269 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 90, 33 |
| Conread position: | 381-773 |
| Cow position: | chr11:54485166-54484773 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 217 |
| Conread position: | 386-773 |
| Cow position: | chr11:26070793-26070417 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 64 |
| Conread position: | 388-750 |
| Cow position: | chr11:32480923-32480560 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 26 |
| Conread position: | 398-773 |
| Cow position: | chr11:71982260-71981887 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 7 |
| Conread position: | 429-773 |
| Cow position: | chr11:4270093-4269762 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 249 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 35, 173 |
| Conread position: | 434-771 |
| Cow position: | chr11:19063774-19063434 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 170 |
| Conread position: | 441-592 |
| Cow position: | chr11:38219963-38219812 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 116 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 79, 95 |
| Conread position: | 478-720 |
| Cow position: | chr11:22935429-22935661 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 41, 57 |
| Conread position: | 488-773 |
| Cow position: | chr11:4057121-4056836 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 212 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 111 |
| Conread position: | 490-771 |
| Cow position: | chr11:5342564-5342283 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 192 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 31, 111 |
| Conread position: | 502-771 |
| Cow position: | chr11:30252567-30252836 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 186 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 17, 99 |
| Conread position: | 551-773 |
| Cow position: | chr11:9601912-9601692 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 161 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 121, 44 |
| Conread position: | 563-773 |
| Cow position: | chr11:30123413-30123205 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 30, 39 |
| Conread position: | 593-754 |
| Cow position: | chr11:29232553-29232388 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 129 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 611-769 |
| Cow position: | chr11:4063382-4063231 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 119 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 611-773 |
| Cow position: | chr11:1489664-1489506 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 124 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 64, 37 |
| Conread position: | 621-766 |
| Cow position: | chr11:52657586-52657446 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 111 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 6, 52 |
| Conread position: | 646-773 |
| Cow position: | chr11:21902582-21902455 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 101 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 34, 103 |
| Conread position: | 680-773 |
| Cow position: | chr11:84390093-84390185 (view UCSC Genome Browser custom track) |
| Alignm length: | 94 |
| Alignm identity: | 82 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 10, 0 |
Show alignments to all cow chromosomes.