Cow genome map
| Conread name: | Lng1-LNG010059B05 |
| Conread position: | 23-761 |
| Cow position: | chr15:9429771-9430513 (view UCSC Genome Browser custom track) |
| Alignm length: | 758 |
| Alignm identity: | 544 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 26 |
| Conread position: | 25-472 |
| Cow position: | chr15:24794192-24794636 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 33 |
| Conread position: | 43-745 |
| Cow position: | chr15:40105714-40106397 (view UCSC Genome Browser custom track) |
| Alignm length: | 721 |
| Alignm identity: | 510 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 52 |
| Conread position: | 49-316 |
| Cow position: | chr15:36642785-36643059 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 21 |
| Conread position: | 49-771 |
| Cow position: | chr15:21449551-21450245 (view UCSC Genome Browser custom track) |
| Alignm length: | 735 |
| Alignm identity: | 505 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 21 |
| Conread position: | 49-773 |
| Cow position: | chr15:13674387-13675087 (view UCSC Genome Browser custom track) |
| Alignm length: | 740 |
| Alignm identity: | 467 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 90, 43 |
| Conread position: | 55-772 |
| Cow position: | chr15:1237545-1238262 (view UCSC Genome Browser custom track) |
| Alignm length: | 733 |
| Alignm identity: | 512 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 37 |
| Conread position: | 56-673 |
| Cow position: | chr15:35735428-35736063 (view UCSC Genome Browser custom track) |
| Alignm length: | 647 |
| Alignm identity: | 474 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 146 |
| Conread position: | 93-771 |
| Cow position: | chr15:4961546-4962217 (view UCSC Genome Browser custom track) |
| Alignm length: | 694 |
| Alignm identity: | 506 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 136 |
| Conread position: | 95-771 |
| Cow position: | chr15:20356992-20356338 (view UCSC Genome Browser custom track) |
| Alignm length: | 683 |
| Alignm identity: | 453 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 134, 20 |
| Conread position: | 97-694 |
| Cow position: | chr15:1763995-1764593 (view UCSC Genome Browser custom track) |
| Alignm length: | 610 |
| Alignm identity: | 441 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 8 |
| Conread position: | 98-389 |
| Cow position: | chr15:6593038-6592757 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 7 |
| Conread position: | 99-771 |
| Cow position: | chr15:7837151-7837833 (view UCSC Genome Browser custom track) |
| Alignm length: | 690 |
| Alignm identity: | 516 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 23 |
| Conread position: | 99-773 |
| Cow position: | chr15:4922058-4922734 (view UCSC Genome Browser custom track) |
| Alignm length: | 686 |
| Alignm identity: | 507 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 6 |
| Conread position: | 99-773 |
| Cow position: | chr15:8099395-8100055 (view UCSC Genome Browser custom track) |
| Alignm length: | 683 |
| Alignm identity: | 507 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 6 |
| Conread position: | 99-773 |
| Cow position: | chr15:15347212-15346529 (view UCSC Genome Browser custom track) |
| Alignm length: | 693 |
| Alignm identity: | 534 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 23 |
| Conread position: | 99-773 |
| Cow position: | chr15:18332921-18332244 (view UCSC Genome Browser custom track) |
| Alignm length: | 689 |
| Alignm identity: | 516 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 6 |
| Conread position: | 99-773 |
| Cow position: | chr15:19738146-19737464 (view UCSC Genome Browser custom track) |
| Alignm length: | 693 |
| Alignm identity: | 529 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 20 |
| Conread position: | 99-773 |
| Cow position: | chr15:21665839-21665161 (view UCSC Genome Browser custom track) |
| Alignm length: | 685 |
| Alignm identity: | 511 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 23 |
| Conread position: | 99-773 |
| Cow position: | chr15:31358793-31359462 (view UCSC Genome Browser custom track) |
| Alignm length: | 684 |
| Alignm identity: | 497 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 23 |
| Conread position: | 99-774 |
| Cow position: | chr15:32494479-32493801 (view UCSC Genome Browser custom track) |
| Alignm length: | 691 |
| Alignm identity: | 518 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 6 |
| Conread position: | 100-636 |
| Cow position: | chr15:6623002-6623532 (view UCSC Genome Browser custom track) |
| Alignm length: | 548 |
| Alignm identity: | 368 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 18 |
| Conread position: | 100-771 |
| Cow position: | chr15:7966057-7965364 (view UCSC Genome Browser custom track) |
| Alignm length: | 703 |
| Alignm identity: | 476 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 16 |
| Conread position: | 100-773 |
| Cow position: | chr15:2076556-2077243 (view UCSC Genome Browser custom track) |
| Alignm length: | 694 |
| Alignm identity: | 514 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 22 |
| Conread position: | 100-773 |
| Cow position: | chr15:8750333-8750987 (view UCSC Genome Browser custom track) |
| Alignm length: | 682 |
| Alignm identity: | 494 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 131 |
| Conread position: | 101-761 |
| Cow position: | chr15:7544790-7545436 (view UCSC Genome Browser custom track) |
| Alignm length: | 673 |
| Alignm identity: | 469 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 57 |
| Conread position: | 103-486 |
| Cow position: | chr15:12421256-12420862 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 129 |
| Conread position: | 103-759 |
| Cow position: | chr15:37392401-37393063 (view UCSC Genome Browser custom track) |
| Alignm length: | 672 |
| Alignm identity: | 494 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 206 |
| Conread position: | 103-771 |
| Cow position: | chr15:328339-329002 (view UCSC Genome Browser custom track) |
| Alignm length: | 685 |
| Alignm identity: | 462 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 13 |
| Conread position: | 103-773 |
| Cow position: | chr15:6156044-6155358 (view UCSC Genome Browser custom track) |
| Alignm length: | 692 |
| Alignm identity: | 517 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 512 |
| Conread position: | 104-773 |
| Cow position: | chr15:7934241-7934914 (view UCSC Genome Browser custom track) |
| Alignm length: | 684 |
| Alignm identity: | 510 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 129, 74 |
| Conread position: | 105-228 |
| Cow position: | chr15:6553944-6553819 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 99 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 105-228 |
| Cow position: | chr15:38979840-38979968 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 101 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 105-289 |
| Cow position: | chr15:4733771-4733954 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 134 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 38, 135 |
| Conread position: | 105-711 |
| Cow position: | chr15:7894319-7893717 (view UCSC Genome Browser custom track) |
| Alignm length: | 622 |
| Alignm identity: | 461 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 31 |
| Conread position: | 105-763 |
| Cow position: | chr15:10888517-10889192 (view UCSC Genome Browser custom track) |
| Alignm length: | 683 |
| Alignm identity: | 511 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 134 |
| Conread position: | 105-773 |
| Cow position: | chr15:524949-524274 (view UCSC Genome Browser custom track) |
| Alignm length: | 683 |
| Alignm identity: | 493 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 310 |
| Conread position: | 105-774 |
| Cow position: | chr15:315947-315273 (view UCSC Genome Browser custom track) |
| Alignm length: | 684 |
| Alignm identity: | 491 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 32 |
| Conread position: | 106-485 |
| Cow position: | chr15:17292353-17292745 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 13 |
| Conread position: | 106-771 |
| Cow position: | chr15:4671344-4672017 (view UCSC Genome Browser custom track) |
| Alignm length: | 679 |
| Alignm identity: | 521 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 13 |
| Conread position: | 115-272 |
| Cow position: | chr15:4682152-4682312 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 129 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 9, 67 |
| Conread position: | 116-773 |
| Cow position: | chr15:24295020-24295683 (view UCSC Genome Browser custom track) |
| Alignm length: | 672 |
| Alignm identity: | 500 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 19 |
| Conread position: | 117-343 |
| Cow position: | chr15:2011999-2012227 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 172 |
| Alignm E-value: | 8.99999e-40 |
| Alignm gaps (pig, cow): | 21, 35 |
| Conread position: | 119-771 |
| Cow position: | chr15:4196381-4197045 (view UCSC Genome Browser custom track) |
| Alignm length: | 668 |
| Alignm identity: | 487 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 494 |
| Conread position: | 126-756 |
| Cow position: | chr15:7234233-7234830 (view UCSC Genome Browser custom track) |
| Alignm length: | 636 |
| Alignm identity: | 435 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 107 |
| Conread position: | 127-771 |
| Cow position: | chr15:3888807-3889461 (view UCSC Genome Browser custom track) |
| Alignm length: | 665 |
| Alignm identity: | 472 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 31 |
| Conread position: | 127-771 |
| Cow position: | chr15:4142890-4142235 (view UCSC Genome Browser custom track) |
| Alignm length: | 660 |
| Alignm identity: | 490 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 169 |
| Conread position: | 137-736 |
| Cow position: | chr15:36970862-36971465 (view UCSC Genome Browser custom track) |
| Alignm length: | 614 |
| Alignm identity: | 450 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 133 |
| Conread position: | 162-773 |
| Cow position: | chr15:2762657-2763251 (view UCSC Genome Browser custom track) |
| Alignm length: | 622 |
| Alignm identity: | 412 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 108, 14 |
| Conread position: | 166-773 |
| Cow position: | chr15:369186-368582 (view UCSC Genome Browser custom track) |
| Alignm length: | 620 |
| Alignm identity: | 448 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 139 |
| Conread position: | 168-771 |
| Cow position: | chr15:35647690-35647085 (view UCSC Genome Browser custom track) |
| Alignm length: | 617 |
| Alignm identity: | 480 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 256 |
| Conread position: | 168-773 |
| Cow position: | chr15:5980333-5980933 (view UCSC Genome Browser custom track) |
| Alignm length: | 619 |
| Alignm identity: | 465 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 337 |
| Conread position: | 168-773 |
| Cow position: | chr15:6078734-6079338 (view UCSC Genome Browser custom track) |
| Alignm length: | 623 |
| Alignm identity: | 459 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 46 |
| Conread position: | 170-771 |
| Cow position: | chr15:14582372-14581777 (view UCSC Genome Browser custom track) |
| Alignm length: | 610 |
| Alignm identity: | 461 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 212, 36 |
| Conread position: | 174-771 |
| Cow position: | chr15:4812585-4813182 (view UCSC Genome Browser custom track) |
| Alignm length: | 605 |
| Alignm identity: | 438 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 162 |
| Conread position: | 218-771 |
| Cow position: | chr15:6553793-6553244 (view UCSC Genome Browser custom track) |
| Alignm length: | 566 |
| Alignm identity: | 415 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 219 |
| Conread position: | 223-750 |
| Cow position: | chr15:8057324-8057856 (view UCSC Genome Browser custom track) |
| Alignm length: | 542 |
| Alignm identity: | 371 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 6 |
| Conread position: | 233-777 |
| Cow position: | chr15:579505-580025 (view UCSC Genome Browser custom track) |
| Alignm length: | 549 |
| Alignm identity: | 371 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 86 |
| Conread position: | 234-764 |
| Cow position: | chr15:38980708-38981245 (view UCSC Genome Browser custom track) |
| Alignm length: | 541 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 148, 368 |
| Conread position: | 234-773 |
| Cow position: | chr15:53137178-53136635 (view UCSC Genome Browser custom track) |
| Alignm length: | 551 |
| Alignm identity: | 407 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 152, 46 |
| Conread position: | 251-766 |
| Cow position: | chr15:35833485-35833997 (view UCSC Genome Browser custom track) |
| Alignm length: | 532 |
| Alignm identity: | 334 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 57, 89 |
| Conread position: | 269-570 |
| Cow position: | chr15:32203737-32204036 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 113, 6 |
| Conread position: | 274-761 |
| Cow position: | chr15:4678384-4678860 (view UCSC Genome Browser custom track) |
| Alignm length: | 501 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 110, 136 |
| Conread position: | 279-773 |
| Cow position: | chr15:4685684-4686183 (view UCSC Genome Browser custom track) |
| Alignm length: | 505 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 336 |
| Conread position: | 308-773 |
| Cow position: | chr15:6068058-6067593 (view UCSC Genome Browser custom track) |
| Alignm length: | 479 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 12 |
| Conread position: | 323-726 |
| Cow position: | chr15:31862426-31862024 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 159 |
| Conread position: | 325-774 |
| Cow position: | chr15:1667840-1668311 (view UCSC Genome Browser custom track) |
| Alignm length: | 478 |
| Alignm identity: | 314 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 59, 273 |
| Conread position: | 377-773 |
| Cow position: | chr15:17218073-17217674 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 225 |
| Conread position: | 380-771 |
| Cow position: | chr15:11597818-11597424 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 224 |
| Conread position: | 380-773 |
| Cow position: | chr15:6592435-6592033 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 227 |
| Conread position: | 380-773 |
| Cow position: | chr15:8811829-8811439 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 144 |
| Conread position: | 380-773 |
| Cow position: | chr15:9003930-9003537 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 167 |
| Conread position: | 386-665 |
| Cow position: | chr15:2012248-2012525 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 201 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 76, 36 |
| Conread position: | 388-716 |
| Cow position: | chr15:9739169-9738843 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 222 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 77, 218 |
| Conread position: | 422-773 |
| Cow position: | chr15:9912920-9913278 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 178 |
| Conread position: | 431-771 |
| Cow position: | chr15:2801699-2801359 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 230 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 39, 57 |
| Conread position: | 459-762 |
| Cow position: | chr15:7260871-7261173 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 215 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 76, 112 |
| Conread position: | 482-773 |
| Cow position: | chr15:4765472-4765762 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 209 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 58, 109 |
| Conread position: | 488-771 |
| Cow position: | chr15:51217907-51218187 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 207 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 33, 13 |
| Conread position: | 488-773 |
| Cow position: | chr15:4386060-4386345 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 208 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 33, 105 |
| Conread position: | 491-773 |
| Cow position: | chr15:11625998-11626274 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 202 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 29, 61 |
| Conread position: | 510-769 |
| Cow position: | chr15:2016892-2017150 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 185 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 10, 34 |
| Conread position: | 531-773 |
| Cow position: | chr15:1300460-1300221 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 183 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 8, 67 |
| Conread position: | 552-772 |
| Cow position: | chr15:6368589-6368374 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 128, 45 |
Show alignments to all cow chromosomes.