Cow genome map

Conread name: Lng1-LNG010059B05

Conread position: 7-773
Cow position: chr2:5485292-5484525 (view UCSC Genome Browser custom track)
Alignm length: 794
Alignm identity: 576
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 200

Conread position: 25-342
Cow position: chr2:7902734-7903051 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 10

Conread position: 35-290
Cow position: chr2:1362883-1363144 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 209
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 26, 47

Conread position: 44-673
Cow position: chr2:11692295-11692909 (view UCSC Genome Browser custom track)
Alignm length: 640
Alignm identity: 418
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 16

Conread position: 45-771
Cow position: chr2:36053260-36052542 (view UCSC Genome Browser custom track)
Alignm length: 740
Alignm identity: 544
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 8

Conread position: 48-398
Cow position: chr2:5963352-5962984 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 13

Conread position: 49-265
Cow position: chr2:78742040-78742269 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 164
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 49, 22

Conread position: 49-735
Cow position: chr2:34564873-34564188 (view UCSC Genome Browser custom track)
Alignm length: 719
Alignm identity: 506
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 26

Conread position: 49-773
Cow position: chr2:36030599-36029901 (view UCSC Genome Browser custom track)
Alignm length: 740
Alignm identity: 522
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 43

Conread position: 50-591
Cow position: chr2:39622362-39622899 (view UCSC Genome Browser custom track)
Alignm length: 558
Alignm identity: 422
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 25

Conread position: 51-773
Cow position: chr2:38373147-38373853 (view UCSC Genome Browser custom track)
Alignm length: 747
Alignm identity: 474
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 61, 41

Conread position: 64-552
Cow position: chr2:11729621-11730113 (view UCSC Genome Browser custom track)
Alignm length: 503
Alignm identity: 359
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 104

Conread position: 65-767
Cow position: chr2:40538244-40538936 (view UCSC Genome Browser custom track)
Alignm length: 719
Alignm identity: 476
Alignm E-value: 0
Alignm gaps (pig, cow): 97, 20

Conread position: 66-484
Cow position: chr2:28643068-28642642 (view UCSC Genome Browser custom track)
Alignm length: 436
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 132

Conread position: 84-673
Cow position: chr2:199012-198421 (view UCSC Genome Browser custom track)
Alignm length: 604
Alignm identity: 435
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 9

Conread position: 93-773
Cow position: chr2:49604736-49605411 (view UCSC Genome Browser custom track)
Alignm length: 703
Alignm identity: 496
Alignm E-value: 0
Alignm gaps (pig, cow): 141, 28

Conread position: 98-223
Cow position: chr2:26869058-26869185 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 101
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 45, 7

Conread position: 98-765
Cow position: chr2:53329546-53330222 (view UCSC Genome Browser custom track)
Alignm length: 686
Alignm identity: 521
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 21

Conread position: 99-771
Cow position: chr2:28793043-28793714 (view UCSC Genome Browser custom track)
Alignm length: 679
Alignm identity: 496
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 39

Conread position: 99-773
Cow position: chr2:282900-282221 (view UCSC Genome Browser custom track)
Alignm length: 689
Alignm identity: 522
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 23

Conread position: 99-773
Cow position: chr2:8118328-8119010 (view UCSC Genome Browser custom track)
Alignm length: 690
Alignm identity: 525
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 25

Conread position: 99-773
Cow position: chr2:10186441-10185757 (view UCSC Genome Browser custom track)
Alignm length: 693
Alignm identity: 514
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 6

Conread position: 99-773
Cow position: chr2:12224522-12223844 (view UCSC Genome Browser custom track)
Alignm length: 697
Alignm identity: 505
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 23

Conread position: 99-773
Cow position: chr2:16900041-16900721 (view UCSC Genome Browser custom track)
Alignm length: 690
Alignm identity: 529
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 23

Conread position: 99-773
Cow position: chr2:50077388-50078068 (view UCSC Genome Browser custom track)
Alignm length: 692
Alignm identity: 513
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 39

Conread position: 100-773
Cow position: chr2:10268867-10268189 (view UCSC Genome Browser custom track)
Alignm length: 685
Alignm identity: 503
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 5

Conread position: 100-773
Cow position: chr2:13045913-13045245 (view UCSC Genome Browser custom track)
Alignm length: 685
Alignm identity: 518
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 5

Conread position: 100-773
Cow position: chr2:74857028-74857690 (view UCSC Genome Browser custom track)
Alignm length: 687
Alignm identity: 464
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 35

Conread position: 101-772
Cow position: chr2:42333061-42332408 (view UCSC Genome Browser custom track)
Alignm length: 683
Alignm identity: 488
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 39

Conread position: 102-354
Cow position: chr2:69584834-69584578 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 203
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 149

Conread position: 105-331
Cow position: chr2:4926379-4926151 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 169
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 62, 215

Conread position: 105-761
Cow position: chr2:44991499-44990847 (view UCSC Genome Browser custom track)
Alignm length: 672
Alignm identity: 489
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 32

Conread position: 105-762
Cow position: chr2:5813588-5812945 (view UCSC Genome Browser custom track)
Alignm length: 664
Alignm identity: 477
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 357

Conread position: 105-762
Cow position: chr2:24146656-24147323 (view UCSC Genome Browser custom track)
Alignm length: 677
Alignm identity: 498
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 148

Conread position: 105-771
Cow position: chr2:65938653-65937986 (view UCSC Genome Browser custom track)
Alignm length: 679
Alignm identity: 503
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 32

Conread position: 106-773
Cow position: chr2:11159327-11158650 (view UCSC Genome Browser custom track)
Alignm length: 683
Alignm identity: 516
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 15

Conread position: 111-771
Cow position: chr2:57334989-57335663 (view UCSC Genome Browser custom track)
Alignm length: 678
Alignm identity: 498
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 504

Conread position: 113-539
Cow position: chr2:5905059-5904628 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 7

Conread position: 114-484
Cow position: chr2:78762264-78762626 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 108

Conread position: 117-771
Cow position: chr2:41686316-41686975 (view UCSC Genome Browser custom track)
Alignm length: 670
Alignm identity: 491
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 88

Conread position: 117-773
Cow position: chr2:5870549-5869918 (view UCSC Genome Browser custom track)
Alignm length: 660
Alignm identity: 476
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 71

Conread position: 117-773
Cow position: chr2:41172478-41173136 (view UCSC Genome Browser custom track)
Alignm length: 673
Alignm identity: 501
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 75

Conread position: 119-671
Cow position: chr2:2380909-2381470 (view UCSC Genome Browser custom track)
Alignm length: 568
Alignm identity: 414
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 137

Conread position: 119-771
Cow position: chr2:9907715-9908380 (view UCSC Genome Browser custom track)
Alignm length: 669
Alignm identity: 489
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 495

Conread position: 121-768
Cow position: chr2:10732954-10732309 (view UCSC Genome Browser custom track)
Alignm length: 659
Alignm identity: 500
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 16

Conread position: 121-771
Cow position: chr2:49472052-49472715 (view UCSC Genome Browser custom track)
Alignm length: 667
Alignm identity: 486
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 492

Conread position: 127-671
Cow position: chr2:51990436-51989889 (view UCSC Genome Browser custom track)
Alignm length: 555
Alignm identity: 409
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 126

Conread position: 127-771
Cow position: chr2:3324752-3324094 (view UCSC Genome Browser custom track)
Alignm length: 663
Alignm identity: 478
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 489

Conread position: 133-771
Cow position: chr2:19011165-19011812 (view UCSC Genome Browser custom track)
Alignm length: 652
Alignm identity: 489
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 313

Conread position: 141-602
Cow position: chr2:47603419-47602948 (view UCSC Genome Browser custom track)
Alignm length: 473
Alignm identity: 354
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 259

Conread position: 143-773
Cow position: chr2:80293122-80292492 (view UCSC Genome Browser custom track)
Alignm length: 643
Alignm identity: 467
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 463

Conread position: 153-773
Cow position: chr2:781595-780973 (view UCSC Genome Browser custom track)
Alignm length: 634
Alignm identity: 452
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 153

Conread position: 168-773
Cow position: chr2:3835113-3834493 (view UCSC Genome Browser custom track)
Alignm length: 628
Alignm identity: 437
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 443

Conread position: 169-773
Cow position: chr2:14822979-14823561 (view UCSC Genome Browser custom track)
Alignm length: 611
Alignm identity: 480
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 53

Conread position: 170-697
Cow position: chr2:28620167-28619638 (view UCSC Genome Browser custom track)
Alignm length: 535
Alignm identity: 388
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 213

Conread position: 174-773
Cow position: chr2:31297660-31298252 (view UCSC Genome Browser custom track)
Alignm length: 610
Alignm identity: 460
Alignm E-value: 0
Alignm gaps (pig, cow): 203, 18

Conread position: 176-721
Cow position: chr2:767572-767063 (view UCSC Genome Browser custom track)
Alignm length: 552
Alignm identity: 363
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 30, 119

Conread position: 178-698
Cow position: chr2:76024653-76025151 (view UCSC Genome Browser custom track)
Alignm length: 528
Alignm identity: 356
Alignm E-value: 0
Alignm gaps (pig, cow): 81, 16

Conread position: 178-773
Cow position: chr2:73193011-73193578 (view UCSC Genome Browser custom track)
Alignm length: 604
Alignm identity: 411
Alignm E-value: 0
Alignm gaps (pig, cow): 280, 51

Conread position: 193-771
Cow position: chr2:41657063-41657642 (view UCSC Genome Browser custom track)
Alignm length: 591
Alignm identity: 424
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 97

Conread position: 241-773
Cow position: chr2:25888658-25888125 (view UCSC Genome Browser custom track)
Alignm length: 541
Alignm identity: 215
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 262, 9

Conread position: 249-773
Cow position: chr2:16075574-16075041 (view UCSC Genome Browser custom track)
Alignm length: 545
Alignm identity: 390
Alignm E-value: 0
Alignm gaps (pig, cow): 137, 187

Conread position: 254-771
Cow position: chr2:78742520-78743058 (view UCSC Genome Browser custom track)
Alignm length: 557
Alignm identity: 384
Alignm E-value: 0
Alignm gaps (pig, cow): 128, 33

Conread position: 273-773
Cow position: chr2:15576871-15576373 (view UCSC Genome Browser custom track)
Alignm length: 508
Alignm identity: 383
Alignm E-value: 0
Alignm gaps (pig, cow): 111, 55

Conread position: 279-773
Cow position: chr2:1690945-1691444 (view UCSC Genome Browser custom track)
Alignm length: 505
Alignm identity: 371
Alignm E-value: 0
Alignm gaps (pig, cow): 191, 325

Conread position: 294-773
Cow position: chr2:34051154-34051636 (view UCSC Genome Browser custom track)
Alignm length: 488
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 92, 41

Conread position: 304-718
Cow position: chr2:41150618-41151032 (view UCSC Genome Browser custom track)
Alignm length: 426
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 82, 106

Conread position: 307-773
Cow position: chr2:43960725-43961162 (view UCSC Genome Browser custom track)
Alignm length: 470
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 234, 44

Conread position: 310-773
Cow position: chr2:47810845-47811313 (view UCSC Genome Browser custom track)
Alignm length: 476
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 105

Conread position: 319-719
Cow position: chr2:573607-573988 (view UCSC Genome Browser custom track)
Alignm length: 407
Alignm identity: 278
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 142, 16

Conread position: 319-773
Cow position: chr2:51617270-51617717 (view UCSC Genome Browser custom track)
Alignm length: 460
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 143, 76

Conread position: 380-765
Cow position: chr2:4927319-4926953 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 266
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 69, 119

Conread position: 380-773
Cow position: chr2:7903113-7903506 (view UCSC Genome Browser custom track)
Alignm length: 402
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 10

Conread position: 418-739
Cow position: chr2:32655779-32656104 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 185

Conread position: 441-771
Cow position: chr2:39421755-39422089 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 164

Conread position: 459-773
Cow position: chr2:38274007-38274315 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 209
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 90, 15

Conread position: 478-773
Cow position: chr2:52062719-52063013 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 178
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 64, 120

Conread position: 488-773
Cow position: chr2:24924746-24925031 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 204
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 33, 111

Conread position: 488-773
Cow position: chr2:28649414-28649130 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 107

Conread position: 488-773
Cow position: chr2:78762837-78763120 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 202
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 31, 115

Conread position: 489-771
Cow position: chr2:28640662-28640388 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 201
Alignm E-value: 9e-35
Alignm gaps (pig, cow): 30, 109

Conread position: 511-771
Cow position: chr2:2356232-2355974 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 185
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 27, 6

Conread position: 517-773
Cow position: chr2:42670492-42670237 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 189
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 24, 81

Conread position: 519-773
Cow position: chr2:53554181-53554426 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 174
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 156, 78

Conread position: 520-771
Cow position: chr2:72598027-72598268 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 180
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 23, 51

Conread position: 527-773
Cow position: chr2:20902126-20901877 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 178
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 16, 197

Conread position: 528-771
Cow position: chr2:5904094-5903852 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 181
Alignm E-value: 5.99994e-41
Alignm gaps (pig, cow): 13, 70

Conread position: 542-761
Cow position: chr2:53744990-53745206 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 150
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 54, 0

Conread position: 563-768
Cow position: chr2:81257434-81257634 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 156
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 46, 30

Conread position: 597-750
Cow position: chr2:16290751-16290908 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 123
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 12, 0

Conread position: 611-773
Cow position: chr2:64769386-64769223 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 119
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 64, 0

Conread position: 616-767
Cow position: chr2:27317626-27317776 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 117
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 107, 37

Show alignments to all cow chromosomes.