Cow genome map

Conread name: Lng1-LNG010059B05

Conread position: 1-382
Cow position: chr3:77423888-77424271 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 52

Conread position: 1-490
Cow position: chr3:6878967-6878496 (view UCSC Genome Browser custom track)
Alignm length: 498
Alignm identity: 362
Alignm E-value: 0
Alignm gaps (pig, cow): 166, 24

Conread position: 6-399
Cow position: chr3:4027828-4028224 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 165

Conread position: 25-773
Cow position: chr3:58947729-58948471 (view UCSC Genome Browser custom track)
Alignm length: 764
Alignm identity: 567
Alignm E-value: 0
Alignm gaps (pig, cow): 95, 38

Conread position: 40-772
Cow position: chr3:42053043-42052303 (view UCSC Genome Browser custom track)
Alignm length: 764
Alignm identity: 491
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 54

Conread position: 43-773
Cow position: chr3:6685919-6686663 (view UCSC Genome Browser custom track)
Alignm length: 755
Alignm identity: 577
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 49

Conread position: 44-265
Cow position: chr3:19944166-19944392 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 160
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 16, 0

Conread position: 48-497
Cow position: chr3:15178830-15179281 (view UCSC Genome Browser custom track)
Alignm length: 457
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 39

Conread position: 49-468
Cow position: chr3:26836635-26836258 (view UCSC Genome Browser custom track)
Alignm length: 424
Alignm identity: 296
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 61, 46

Conread position: 49-574
Cow position: chr3:52864014-52863471 (view UCSC Genome Browser custom track)
Alignm length: 546
Alignm identity: 411
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 190

Conread position: 49-755
Cow position: chr3:48230333-48229641 (view UCSC Genome Browser custom track)
Alignm length: 726
Alignm identity: 531
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 5

Conread position: 79-309
Cow position: chr3:18728612-18728389 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 161
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 150, 37

Conread position: 93-756
Cow position: chr3:18463392-18462731 (view UCSC Genome Browser custom track)
Alignm length: 677
Alignm identity: 500
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 45

Conread position: 96-773
Cow position: chr3:50915501-50916193 (view UCSC Genome Browser custom track)
Alignm length: 698
Alignm identity: 504
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 220

Conread position: 97-773
Cow position: chr3:49677974-49678657 (view UCSC Genome Browser custom track)
Alignm length: 695
Alignm identity: 530
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 24

Conread position: 99-247
Cow position: chr3:26822328-26822178 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 117
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 26, 6

Conread position: 99-463
Cow position: chr3:36881741-36881367 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 25

Conread position: 99-568
Cow position: chr3:49333965-49334438 (view UCSC Genome Browser custom track)
Alignm length: 483
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 19

Conread position: 99-748
Cow position: chr3:64017184-64016533 (view UCSC Genome Browser custom track)
Alignm length: 662
Alignm identity: 493
Alignm E-value: 0
Alignm gaps (pig, cow): 135, 6

Conread position: 99-772
Cow position: chr3:18811681-18812360 (view UCSC Genome Browser custom track)
Alignm length: 689
Alignm identity: 511
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 21

Conread position: 99-773
Cow position: chr3:5954005-5953326 (view UCSC Genome Browser custom track)
Alignm length: 689
Alignm identity: 495
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 6

Conread position: 99-773
Cow position: chr3:10239834-10240512 (view UCSC Genome Browser custom track)
Alignm length: 690
Alignm identity: 515
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 21

Conread position: 99-773
Cow position: chr3:19756778-19756093 (view UCSC Genome Browser custom track)
Alignm length: 691
Alignm identity: 523
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 25

Conread position: 99-773
Cow position: chr3:21182506-21181845 (view UCSC Genome Browser custom track)
Alignm length: 688
Alignm identity: 517
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 23

Conread position: 99-773
Cow position: chr3:23290161-23289479 (view UCSC Genome Browser custom track)
Alignm length: 692
Alignm identity: 521
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 40

Conread position: 99-773
Cow position: chr3:34030718-34030049 (view UCSC Genome Browser custom track)
Alignm length: 690
Alignm identity: 506
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 23

Conread position: 99-773
Cow position: chr3:40823568-40824244 (view UCSC Genome Browser custom track)
Alignm length: 690
Alignm identity: 521
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 23

Conread position: 99-773
Cow position: chr3:45774232-45773550 (view UCSC Genome Browser custom track)
Alignm length: 698
Alignm identity: 474
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 40

Conread position: 99-773
Cow position: chr3:49545026-49544354 (view UCSC Genome Browser custom track)
Alignm length: 691
Alignm identity: 508
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 23

Conread position: 99-773
Cow position: chr3:53515794-53516468 (view UCSC Genome Browser custom track)
Alignm length: 688
Alignm identity: 515
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 23

Conread position: 99-773
Cow position: chr3:57484549-57483874 (view UCSC Genome Browser custom track)
Alignm length: 690
Alignm identity: 519
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 6

Conread position: 99-773
Cow position: chr3:59861547-59862228 (view UCSC Genome Browser custom track)
Alignm length: 690
Alignm identity: 518
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 23

Conread position: 99-773
Cow position: chr3:75040989-75040305 (view UCSC Genome Browser custom track)
Alignm length: 690
Alignm identity: 523
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 23

Conread position: 99-773
Cow position: chr3:78027229-78026564 (view UCSC Genome Browser custom track)
Alignm length: 688
Alignm identity: 518
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 23

Conread position: 100-773
Cow position: chr3:63003367-63002688 (view UCSC Genome Browser custom track)
Alignm length: 692
Alignm identity: 511
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 37

Conread position: 103-223
Cow position: chr3:40157327-40157204 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 102
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 40, 0

Conread position: 103-773
Cow position: chr3:66620355-66621038 (view UCSC Genome Browser custom track)
Alignm length: 689
Alignm identity: 514
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 36

Conread position: 105-222
Cow position: chr3:41000295-41000414 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 97
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 20, 11

Conread position: 105-263
Cow position: chr3:55229515-55229355 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 122
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 34, 153

Conread position: 105-771
Cow position: chr3:7481046-7480375 (view UCSC Genome Browser custom track)
Alignm length: 679
Alignm identity: 514
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 32

Conread position: 105-773
Cow position: chr3:42432417-42433074 (view UCSC Genome Browser custom track)
Alignm length: 680
Alignm identity: 500
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 149

Conread position: 105-773
Cow position: chr3:45895372-45894696 (view UCSC Genome Browser custom track)
Alignm length: 692
Alignm identity: 513
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 119

Conread position: 105-773
Cow position: chr3:45974683-45975358 (view UCSC Genome Browser custom track)
Alignm length: 690
Alignm identity: 512
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 119

Conread position: 105-773
Cow position: chr3:46502719-46503402 (view UCSC Genome Browser custom track)
Alignm length: 689
Alignm identity: 513
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 316

Conread position: 106-772
Cow position: chr3:30314756-30315415 (view UCSC Genome Browser custom track)
Alignm length: 683
Alignm identity: 509
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 15

Conread position: 115-773
Cow position: chr3:72630265-72630929 (view UCSC Genome Browser custom track)
Alignm length: 674
Alignm identity: 506
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 32

Conread position: 116-515
Cow position: chr3:50011867-50012269 (view UCSC Genome Browser custom track)
Alignm length: 407
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 290

Conread position: 116-773
Cow position: chr3:23213876-23213221 (view UCSC Genome Browser custom track)
Alignm length: 673
Alignm identity: 496
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 59

Conread position: 116-773
Cow position: chr3:56340230-56339563 (view UCSC Genome Browser custom track)
Alignm length: 676
Alignm identity: 503
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 288

Conread position: 117-672
Cow position: chr3:14439570-14439011 (view UCSC Genome Browser custom track)
Alignm length: 568
Alignm identity: 409
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 322

Conread position: 117-771
Cow position: chr3:6782575-6783219 (view UCSC Genome Browser custom track)
Alignm length: 666
Alignm identity: 468
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 219

Conread position: 117-771
Cow position: chr3:45032932-45033601 (view UCSC Genome Browser custom track)
Alignm length: 673
Alignm identity: 488
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 498

Conread position: 117-771
Cow position: chr3:64650817-64651482 (view UCSC Genome Browser custom track)
Alignm length: 670
Alignm identity: 484
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 487

Conread position: 119-771
Cow position: chr3:2917652-2918316 (view UCSC Genome Browser custom track)
Alignm length: 669
Alignm identity: 492
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 93

Conread position: 127-771
Cow position: chr3:68873554-68872902 (view UCSC Genome Browser custom track)
Alignm length: 661
Alignm identity: 474
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 297

Conread position: 130-771
Cow position: chr3:20380747-20381396 (view UCSC Genome Browser custom track)
Alignm length: 656
Alignm identity: 483
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 307

Conread position: 137-771
Cow position: chr3:24314678-24315323 (view UCSC Genome Browser custom track)
Alignm length: 650
Alignm identity: 473
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 217

Conread position: 151-773
Cow position: chr3:19939104-19939748 (view UCSC Genome Browser custom track)
Alignm length: 649
Alignm identity: 472
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 187

Conread position: 167-773
Cow position: chr3:29578876-29579480 (view UCSC Genome Browser custom track)
Alignm length: 618
Alignm identity: 471
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 261

Conread position: 174-594
Cow position: chr3:52654613-52654200 (view UCSC Genome Browser custom track)
Alignm length: 429
Alignm identity: 289
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 55, 81

Conread position: 257-773
Cow position: chr3:2710531-2710013 (view UCSC Genome Browser custom track)
Alignm length: 529
Alignm identity: 390
Alignm E-value: 0
Alignm gaps (pig, cow): 127, 235

Conread position: 258-773
Cow position: chr3:50127316-50126771 (view UCSC Genome Browser custom track)
Alignm length: 551
Alignm identity: 395
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 190

Conread position: 261-762
Cow position: chr3:6661142-6661641 (view UCSC Genome Browser custom track)
Alignm length: 516
Alignm identity: 329
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 57, 68

Conread position: 273-773
Cow position: chr3:19944607-19945085 (view UCSC Genome Browser custom track)
Alignm length: 504
Alignm identity: 369
Alignm E-value: 0
Alignm gaps (pig, cow): 279, 204

Conread position: 301-771
Cow position: chr3:64357409-64356941 (view UCSC Genome Browser custom track)
Alignm length: 481
Alignm identity: 363
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 162

Conread position: 307-765
Cow position: chr3:38493638-38494083 (view UCSC Genome Browser custom track)
Alignm length: 467
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 167

Conread position: 314-774
Cow position: chr3:56397593-56398045 (view UCSC Genome Browser custom track)
Alignm length: 470
Alignm identity: 299
Alignm E-value: 6e-32
Alignm gaps (pig, cow): 129, 77

Conread position: 341-673
Cow position: chr3:24589584-24589253 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 16

Conread position: 367-771
Cow position: chr3:7169656-7170053 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 114

Conread position: 384-773
Cow position: chr3:42447570-42447963 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 217

Conread position: 396-695
Cow position: chr3:4028365-4028673 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 36

Conread position: 431-731
Cow position: chr3:56145797-56146100 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 168

Conread position: 450-773
Cow position: chr3:3841273-3840954 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 147

Conread position: 458-761
Cow position: chr3:53411725-53412011 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 207
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 62, 126

Conread position: 488-771
Cow position: chr3:56098788-56099073 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 201
Alignm E-value: 8e-34
Alignm gaps (pig, cow): 56, 109

Conread position: 490-774
Cow position: chr3:34845712-34846002 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 210
Alignm E-value: 7e-33
Alignm gaps (pig, cow): 51, 104

Conread position: 496-766
Cow position: chr3:46016344-46016608 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 190
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 24, 102

Conread position: 511-771
Cow position: chr3:2869375-2869633 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 186
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 27, 6

Conread position: 511-771
Cow position: chr3:18355673-18355418 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 183
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 9, 27

Conread position: 517-773
Cow position: chr3:3057444-3057687 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 190
Alignm E-value: 9e-35
Alignm gaps (pig, cow): 21, 11

Conread position: 529-773
Cow position: chr3:48058742-48058499 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 176
Alignm E-value: 8e-34
Alignm gaps (pig, cow): 12, 67

Conread position: 536-771
Cow position: chr3:4286705-4286938 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 165
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 136, 63

Conread position: 537-771
Cow position: chr3:63915494-63915262 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 166
Alignm E-value: 7e-33
Alignm gaps (pig, cow): 135, 61

Conread position: 537-773
Cow position: chr3:6877545-6877318 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 175
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 138, 25

Conread position: 555-773
Cow position: chr3:5994449-5994233 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 156
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 117, 42

Conread position: 611-773
Cow position: chr3:83294218-83294056 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 118
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 64, 95

Conread position: 617-773
Cow position: chr3:24445380-24445226 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 120
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 55, 103

Conread position: 627-773
Cow position: chr3:77424343-77424490 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 118
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 53, 139

Conread position: 663-771
Cow position: chr3:24589022-24588913 (view UCSC Genome Browser custom track)
Alignm length: 110
Alignm identity: 88
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 17, 0

Show alignments to all cow chromosomes.