Cow genome map
| Conread name: | Lng1-LNG010059B05 |
| Conread position: | 25-277 |
| Cow position: | chr5:41961936-41961684 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 193 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 8 |
| Conread position: | 25-771 |
| Cow position: | chr5:41528759-41528018 (view UCSC Genome Browser custom track) |
| Alignm length: | 766 |
| Alignm identity: | 572 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 308 |
| Conread position: | 44-774 |
| Cow position: | chr5:35525827-35526555 (view UCSC Genome Browser custom track) |
| Alignm length: | 752 |
| Alignm identity: | 507 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 265 |
| Conread position: | 46-497 |
| Cow position: | chr5:39246985-39246525 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 45 |
| Conread position: | 48-774 |
| Cow position: | chr5:14785357-14784609 (view UCSC Genome Browser custom track) |
| Alignm length: | 760 |
| Alignm identity: | 526 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 30 |
| Conread position: | 53-473 |
| Cow position: | chr5:46660069-46660489 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 39 |
| Conread position: | 98-773 |
| Cow position: | chr5:46738497-46737816 (view UCSC Genome Browser custom track) |
| Alignm length: | 690 |
| Alignm identity: | 527 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 16 |
| Conread position: | 99-698 |
| Cow position: | chr5:415642-415035 (view UCSC Genome Browser custom track) |
| Alignm length: | 617 |
| Alignm identity: | 459 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 6 |
| Conread position: | 99-771 |
| Cow position: | chr5:7273908-7274584 (view UCSC Genome Browser custom track) |
| Alignm length: | 690 |
| Alignm identity: | 516 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 6, 23 |
| Conread position: | 99-771 |
| Cow position: | chr5:30579402-30580085 (view UCSC Genome Browser custom track) |
| Alignm length: | 698 |
| Alignm identity: | 504 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 23 |
| Conread position: | 99-771 |
| Cow position: | chr5:73489481-73488801 (view UCSC Genome Browser custom track) |
| Alignm length: | 689 |
| Alignm identity: | 520 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 21 |
| Conread position: | 99-773 |
| Cow position: | chr5:2914528-2915204 (view UCSC Genome Browser custom track) |
| Alignm length: | 690 |
| Alignm identity: | 516 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 23 |
| Conread position: | 99-773 |
| Cow position: | chr5:3504024-3503363 (view UCSC Genome Browser custom track) |
| Alignm length: | 686 |
| Alignm identity: | 493 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 6, 23 |
| Conread position: | 99-773 |
| Cow position: | chr5:37732426-37733105 (view UCSC Genome Browser custom track) |
| Alignm length: | 690 |
| Alignm identity: | 526 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 23 |
| Conread position: | 99-773 |
| Cow position: | chr5:54792555-54791877 (view UCSC Genome Browser custom track) |
| Alignm length: | 696 |
| Alignm identity: | 522 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 23 |
| Conread position: | 99-773 |
| Cow position: | chr5:55628066-55628749 (view UCSC Genome Browser custom track) |
| Alignm length: | 689 |
| Alignm identity: | 522 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 23 |
| Conread position: | 99-773 |
| Cow position: | chr5:57482466-57481781 (view UCSC Genome Browser custom track) |
| Alignm length: | 692 |
| Alignm identity: | 514 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 23 |
| Conread position: | 100-773 |
| Cow position: | chr5:10918902-10919584 (view UCSC Genome Browser custom track) |
| Alignm length: | 687 |
| Alignm identity: | 507 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 129, 37 |
| Conread position: | 103-773 |
| Cow position: | chr5:32947147-32947817 (view UCSC Genome Browser custom track) |
| Alignm length: | 675 |
| Alignm identity: | 170 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 569, 448 |
| Conread position: | 103-773 |
| Cow position: | chr5:64781936-64781258 (view UCSC Genome Browser custom track) |
| Alignm length: | 683 |
| Alignm identity: | 519 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 36 |
| Conread position: | 105-223 |
| Cow position: | chr5:9686342-9686221 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 97 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 105-247 |
| Cow position: | chr5:20971961-20971817 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 113 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 105-247 |
| Cow position: | chr5:38842104-38842249 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 114 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 38, 78 |
| Conread position: | 105-247 |
| Cow position: | chr5:52805523-52805669 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 111 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 105-290 |
| Cow position: | chr5:32945961-32946147 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 153 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 62, 14 |
| Conread position: | 105-693 |
| Cow position: | chr5:31101540-31100950 (view UCSC Genome Browser custom track) |
| Alignm length: | 601 |
| Alignm identity: | 456 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 21 |
| Conread position: | 105-773 |
| Cow position: | chr5:4385331-4386001 (view UCSC Genome Browser custom track) |
| Alignm length: | 678 |
| Alignm identity: | 496 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 129, 46 |
| Conread position: | 105-773 |
| Cow position: | chr5:34696688-34697361 (view UCSC Genome Browser custom track) |
| Alignm length: | 684 |
| Alignm identity: | 509 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 42 |
| Conread position: | 117-491 |
| Cow position: | chr5:46644775-46645153 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 112, 317 |
| Conread position: | 117-770 |
| Cow position: | chr5:4019108-4018446 (view UCSC Genome Browser custom track) |
| Alignm length: | 668 |
| Alignm identity: | 476 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 131 |
| Conread position: | 117-771 |
| Cow position: | chr5:10776174-10775515 (view UCSC Genome Browser custom track) |
| Alignm length: | 666 |
| Alignm identity: | 486 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 444 |
| Conread position: | 127-771 |
| Cow position: | chr5:48468179-48467525 (view UCSC Genome Browser custom track) |
| Alignm length: | 659 |
| Alignm identity: | 479 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 279 |
| Conread position: | 137-706 |
| Cow position: | chr5:4089181-4089758 (view UCSC Genome Browser custom track) |
| Alignm length: | 585 |
| Alignm identity: | 431 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 159 |
| Conread position: | 143-773 |
| Cow position: | chr5:12643597-12642968 (view UCSC Genome Browser custom track) |
| Alignm length: | 648 |
| Alignm identity: | 484 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 8 |
| Conread position: | 166-773 |
| Cow position: | chr5:4069362-4069971 (view UCSC Genome Browser custom track) |
| Alignm length: | 621 |
| Alignm identity: | 462 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 440 |
| Conread position: | 168-771 |
| Cow position: | chr5:35300242-35300853 (view UCSC Genome Browser custom track) |
| Alignm length: | 616 |
| Alignm identity: | 460 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 442 |
| Conread position: | 169-773 |
| Cow position: | chr5:53625744-53625155 (view UCSC Genome Browser custom track) |
| Alignm length: | 621 |
| Alignm identity: | 422 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 93 |
| Conread position: | 175-761 |
| Cow position: | chr5:59282478-59283065 (view UCSC Genome Browser custom track) |
| Alignm length: | 588 |
| Alignm identity: | 112 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 497, 0 |
| Conread position: | 202-759 |
| Cow position: | chr5:47894355-47893795 (view UCSC Genome Browser custom track) |
| Alignm length: | 572 |
| Alignm identity: | 383 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 49 |
| Conread position: | 207-771 |
| Cow position: | chr5:241385-241950 (view UCSC Genome Browser custom track) |
| Alignm length: | 577 |
| Alignm identity: | 420 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 5 |
| Conread position: | 258-667 |
| Cow position: | chr5:41465273-41465678 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 275 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 128, 196 |
| Conread position: | 258-773 |
| Cow position: | chr5:28011889-28012412 (view UCSC Genome Browser custom track) |
| Alignm length: | 530 |
| Alignm identity: | 380 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 124, 304 |
| Conread position: | 258-773 |
| Cow position: | chr5:45700554-45701070 (view UCSC Genome Browser custom track) |
| Alignm length: | 522 |
| Alignm identity: | 390 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 204, 344 |
| Conread position: | 262-773 |
| Cow position: | chr5:49591853-49591342 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 391 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 183 |
| Conread position: | 279-773 |
| Cow position: | chr5:41961464-41960971 (view UCSC Genome Browser custom track) |
| Alignm length: | 501 |
| Alignm identity: | 382 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 147, 324 |
| Conread position: | 295-771 |
| Cow position: | chr5:4757893-4757408 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 315 |
| Conread position: | 299-773 |
| Cow position: | chr5:1341756-1341274 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 358 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 307 |
| Conread position: | 344-771 |
| Cow position: | chr5:42505324-42505759 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 265 |
| Conread position: | 357-771 |
| Cow position: | chr5:38073365-38073787 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 251 |
| Conread position: | 359-664 |
| Cow position: | chr5:29457080-29457367 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 223 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 25, 34 |
| Conread position: | 398-773 |
| Cow position: | chr5:29766269-29766642 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 7 |
| Conread position: | 415-762 |
| Cow position: | chr5:26078800-26078452 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 177 |
| Conread position: | 437-762 |
| Cow position: | chr5:52613527-52613200 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 225 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 20, 9 |
| Conread position: | 439-773 |
| Cow position: | chr5:28241475-28241810 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 170 |
| Conread position: | 442-773 |
| Cow position: | chr5:49518987-49519318 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 154 |
| Conread position: | 457-773 |
| Cow position: | chr5:54861606-54861304 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 229 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 17, 29 |
| Conread position: | 459-774 |
| Cow position: | chr5:46005409-46005098 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 218 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 61, 140 |
| Conread position: | 496-741 |
| Cow position: | chr5:59144722-59144967 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 25, 96 |
| Conread position: | 496-773 |
| Cow position: | chr5:32308911-32308636 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 193 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 24, 101 |
| Conread position: | 497-767 |
| Cow position: | chr5:59639267-59639529 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 186 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 46, 16 |
| Conread position: | 509-765 |
| Cow position: | chr5:36444183-36443929 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 177 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 35, 94 |
| Conread position: | 510-773 |
| Cow position: | chr5:28950371-28950105 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 190 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 10, 52 |
| Conread position: | 526-773 |
| Cow position: | chr5:6154388-6154143 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 12, 72 |
| Conread position: | 537-773 |
| Cow position: | chr5:39246288-39246054 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 179 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 75, 60 |
| Conread position: | 598-773 |
| Cow position: | chr5:41554751-41554576 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 144 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 11, 32 |
Show alignments to all cow chromosomes.