Cow genome map
| Conread name: | Lng1-LNG010059B05 |
| Conread position: | 3-425 |
| Cow position: | chr6:35419730-35419294 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 298 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 81, 121 |
| Conread position: | 50-272 |
| Cow position: | chr6:6475995-6475762 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 58, 21 |
| Conread position: | 52-774 |
| Cow position: | chr6:14762674-14761991 (view UCSC Genome Browser custom track) |
| Alignm length: | 731 |
| Alignm identity: | 446 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 48, 9 |
| Conread position: | 55-773 |
| Cow position: | chr6:7179103-7178397 (view UCSC Genome Browser custom track) |
| Alignm length: | 745 |
| Alignm identity: | 523 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 39 |
| Conread position: | 66-591 |
| Cow position: | chr6:44550918-44550375 (view UCSC Genome Browser custom track) |
| Alignm length: | 553 |
| Alignm identity: | 390 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 9 |
| Conread position: | 96-771 |
| Cow position: | chr6:331255-330570 (view UCSC Genome Browser custom track) |
| Alignm length: | 690 |
| Alignm identity: | 503 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 515 |
| Conread position: | 98-773 |
| Cow position: | chr6:52693244-52693914 (view UCSC Genome Browser custom track) |
| Alignm length: | 688 |
| Alignm identity: | 507 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 7 |
| Conread position: | 99-432 |
| Cow position: | chr6:55544105-55543764 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 23 |
| Conread position: | 99-756 |
| Cow position: | chr6:3889256-3888614 (view UCSC Genome Browser custom track) |
| Alignm length: | 670 |
| Alignm identity: | 483 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 23 |
| Conread position: | 99-762 |
| Cow position: | chr6:15140958-15140294 (view UCSC Genome Browser custom track) |
| Alignm length: | 679 |
| Alignm identity: | 506 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 23 |
| Conread position: | 99-773 |
| Cow position: | chr6:8761083-8760392 (view UCSC Genome Browser custom track) |
| Alignm length: | 695 |
| Alignm identity: | 520 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 23 |
| Conread position: | 99-773 |
| Cow position: | chr6:27529785-27529103 (view UCSC Genome Browser custom track) |
| Alignm length: | 689 |
| Alignm identity: | 515 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 23 |
| Conread position: | 99-773 |
| Cow position: | chr6:35876496-35875818 (view UCSC Genome Browser custom track) |
| Alignm length: | 692 |
| Alignm identity: | 531 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 6 |
| Conread position: | 101-751 |
| Cow position: | chr6:65928187-65928839 (view UCSC Genome Browser custom track) |
| Alignm length: | 664 |
| Alignm identity: | 490 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 20 |
| Conread position: | 103-773 |
| Cow position: | chr6:17046279-17046950 (view UCSC Genome Browser custom track) |
| Alignm length: | 685 |
| Alignm identity: | 499 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 34 |
| Conread position: | 105-223 |
| Cow position: | chr6:59919058-59918938 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 97 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 105-253 |
| Cow position: | chr6:19454142-19454292 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 123 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 27, 143 |
| Conread position: | 105-773 |
| Cow position: | chr6:6566832-6567488 (view UCSC Genome Browser custom track) |
| Alignm length: | 678 |
| Alignm identity: | 503 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 184 |
| Conread position: | 105-773 |
| Cow position: | chr6:30479326-30479999 (view UCSC Genome Browser custom track) |
| Alignm length: | 683 |
| Alignm identity: | 496 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 434 |
| Conread position: | 106-773 |
| Cow position: | chr6:5949549-5948879 (view UCSC Genome Browser custom track) |
| Alignm length: | 681 |
| Alignm identity: | 518 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 15 |
| Conread position: | 106-773 |
| Cow position: | chr6:24239295-24239956 (view UCSC Genome Browser custom track) |
| Alignm length: | 680 |
| Alignm identity: | 501 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 128, 15 |
| Conread position: | 109-756 |
| Cow position: | chr6:38900940-38900292 (view UCSC Genome Browser custom track) |
| Alignm length: | 666 |
| Alignm identity: | 471 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 28 |
| Conread position: | 115-762 |
| Cow position: | chr6:20560876-20560219 (view UCSC Genome Browser custom track) |
| Alignm length: | 664 |
| Alignm identity: | 490 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 24 |
| Conread position: | 116-750 |
| Cow position: | chr6:28275214-28275854 (view UCSC Genome Browser custom track) |
| Alignm length: | 650 |
| Alignm identity: | 485 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 22 |
| Conread position: | 121-664 |
| Cow position: | chr6:15477146-15477705 (view UCSC Genome Browser custom track) |
| Alignm length: | 566 |
| Alignm identity: | 388 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 162 |
| Conread position: | 127-771 |
| Cow position: | chr6:27169823-27170471 (view UCSC Genome Browser custom track) |
| Alignm length: | 658 |
| Alignm identity: | 485 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 203 |
| Conread position: | 127-771 |
| Cow position: | chr6:40251905-40252557 (view UCSC Genome Browser custom track) |
| Alignm length: | 658 |
| Alignm identity: | 475 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 59 |
| Conread position: | 127-773 |
| Cow position: | chr6:40275330-40275986 (view UCSC Genome Browser custom track) |
| Alignm length: | 661 |
| Alignm identity: | 474 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 172 |
| Conread position: | 127-773 |
| Cow position: | chr6:51086188-51086841 (view UCSC Genome Browser custom track) |
| Alignm length: | 660 |
| Alignm identity: | 483 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 204 |
| Conread position: | 132-593 |
| Cow position: | chr6:65914449-65914919 (view UCSC Genome Browser custom track) |
| Alignm length: | 476 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 62 |
| Conread position: | 137-767 |
| Cow position: | chr6:13847277-13847919 (view UCSC Genome Browser custom track) |
| Alignm length: | 649 |
| Alignm identity: | 477 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 272 |
| Conread position: | 140-767 |
| Cow position: | chr6:66232075-66232707 (view UCSC Genome Browser custom track) |
| Alignm length: | 638 |
| Alignm identity: | 459 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 168 |
| Conread position: | 163-752 |
| Cow position: | chr6:11724824-11724232 (view UCSC Genome Browser custom track) |
| Alignm length: | 603 |
| Alignm identity: | 434 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 221, 202 |
| Conread position: | 166-773 |
| Cow position: | chr6:27470887-27471497 (view UCSC Genome Browser custom track) |
| Alignm length: | 621 |
| Alignm identity: | 449 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 250 |
| Conread position: | 168-771 |
| Cow position: | chr6:12666028-12665423 (view UCSC Genome Browser custom track) |
| Alignm length: | 616 |
| Alignm identity: | 459 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 83 |
| Conread position: | 168-773 |
| Cow position: | chr6:40315675-40316282 (view UCSC Genome Browser custom track) |
| Alignm length: | 618 |
| Alignm identity: | 442 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 84 |
| Conread position: | 170-773 |
| Cow position: | chr6:185497-184885 (view UCSC Genome Browser custom track) |
| Alignm length: | 624 |
| Alignm identity: | 459 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 118 |
| Conread position: | 175-770 |
| Cow position: | chr6:7141178-7140567 (view UCSC Genome Browser custom track) |
| Alignm length: | 615 |
| Alignm identity: | 450 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 443 |
| Conread position: | 232-773 |
| Cow position: | chr6:58600837-58601378 (view UCSC Genome Browser custom track) |
| Alignm length: | 555 |
| Alignm identity: | 411 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 133, 72 |
| Conread position: | 236-773 |
| Cow position: | chr6:3488063-3487525 (view UCSC Genome Browser custom track) |
| Alignm length: | 549 |
| Alignm identity: | 408 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 150, 32 |
| Conread position: | 262-767 |
| Cow position: | chr6:6475486-6474975 (view UCSC Genome Browser custom track) |
| Alignm length: | 517 |
| Alignm identity: | 400 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 195, 37 |
| Conread position: | 273-585 |
| Cow position: | chr6:40973674-40973991 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 191, 0 |
| Conread position: | 273-773 |
| Cow position: | chr6:914027-914529 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 375 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 111, 124 |
| Conread position: | 282-696 |
| Cow position: | chr6:40326281-40325861 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 98, 59 |
| Conread position: | 298-773 |
| Cow position: | chr6:28133354-28133828 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 368 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 138 |
| Conread position: | 321-590 |
| Cow position: | chr6:41804297-41804586 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 216 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 344-771 |
| Cow position: | chr6:28491103-28490672 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 237 |
| Conread position: | 381-773 |
| Cow position: | chr6:16634749-16635151 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 139, 118 |
| Conread position: | 396-773 |
| Cow position: | chr6:65881731-65882109 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 205 |
| Conread position: | 422-773 |
| Cow position: | chr6:8202727-8203081 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 180 |
| Conread position: | 431-717 |
| Cow position: | chr6:55542699-55542406 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 211 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 432-773 |
| Cow position: | chr6:25214779-25215117 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 17 |
| Conread position: | 440-588 |
| Cow position: | chr6:58064805-58064953 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 113 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 25, 58 |
| Conread position: | 474-703 |
| Cow position: | chr6:11274296-11274068 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 160 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 38, 44 |
| Conread position: | 474-772 |
| Cow position: | chr6:38271501-38271786 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 117 |
| Conread position: | 486-773 |
| Cow position: | chr6:51730708-51730995 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 205 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 6, 112 |
| Conread position: | 488-773 |
| Cow position: | chr6:3276761-3276476 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 208 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 33, 107 |
| Conread position: | 488-773 |
| Cow position: | chr6:39438380-39438663 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 216 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 109 |
| Conread position: | 488-773 |
| Cow position: | chr6:40866704-40866419 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 204 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 33, 111 |
| Conread position: | 496-773 |
| Cow position: | chr6:30274270-30273995 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 197 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 25, 101 |
| Conread position: | 509-773 |
| Cow position: | chr6:28169538-28169802 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 196 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 10, 88 |
| Conread position: | 510-771 |
| Cow position: | chr6:56043083-56042823 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 183 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 11, 22 |
| Conread position: | 511-771 |
| Cow position: | chr6:1411019-1410762 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 180 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 27, 6 |
| Conread position: | 517-728 |
| Cow position: | chr6:36526905-36527119 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 154 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 517-771 |
| Cow position: | chr6:13316828-13316577 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 190 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 24, 81 |
| Conread position: | 517-773 |
| Cow position: | chr6:39334226-39333971 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 188 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 24, 86 |
| Conread position: | 524-773 |
| Cow position: | chr6:10609556-10609805 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 178 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 18, 73 |
| Conread position: | 537-762 |
| Cow position: | chr6:14389242-14389465 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 135, 62 |
| Conread position: | 548-773 |
| Cow position: | chr6:58027350-58027571 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 170 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 64, 47 |
| Conread position: | 556-758 |
| Cow position: | chr6:29312209-29312409 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 143 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 116, 40 |
| Conread position: | 559-773 |
| Cow position: | chr6:34891438-34891226 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 113, 38 |
| Conread position: | 596-777 |
| Cow position: | chr6:10644463-10644644 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 13, 82 |
| Conread position: | 611-765 |
| Cow position: | chr6:58065469-58065621 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 123 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 110, 47 |
| Conread position: | 619-773 |
| Cow position: | chr6:65842368-65842523 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 120 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 61, 0 |
Show alignments to all cow chromosomes.