Cow genome map

Conread name: Lng1-LNG010059B05

Conread position: 24-664
Cow position: chrX:31081942-31082586 (view UCSC Genome Browser custom track)
Alignm length: 668
Alignm identity: 434
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 25

Conread position: 25-594
Cow position: chrX:17667921-17667325 (view UCSC Genome Browser custom track)
Alignm length: 601
Alignm identity: 437
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 8

Conread position: 25-771
Cow position: chrX:23019298-23020061 (view UCSC Genome Browser custom track)
Alignm length: 769
Alignm identity: 551
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 28

Conread position: 35-772
Cow position: chrX:6282761-6282026 (view UCSC Genome Browser custom track)
Alignm length: 761
Alignm identity: 566
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 13

Conread position: 36-555
Cow position: chrX:44387106-44387635 (view UCSC Genome Browser custom track)
Alignm length: 541
Alignm identity: 410
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 57

Conread position: 44-406
Cow position: chrX:24112827-24112463 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 257
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 78, 16

Conread position: 48-769
Cow position: chrX:13053027-13053737 (view UCSC Genome Browser custom track)
Alignm length: 738
Alignm identity: 525
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 44

Conread position: 49-777
Cow position: chrX:13417417-13416696 (view UCSC Genome Browser custom track)
Alignm length: 742
Alignm identity: 512
Alignm E-value: 0
Alignm gaps (pig, cow): 119, 11

Conread position: 53-773
Cow position: chrX:27960557-27961291 (view UCSC Genome Browser custom track)
Alignm length: 746
Alignm identity: 504
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 41

Conread position: 89-312
Cow position: chrX:28603412-28603190 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 180
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 16

Conread position: 98-772
Cow position: chrX:26767142-26766479 (view UCSC Genome Browser custom track)
Alignm length: 686
Alignm identity: 513
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 7

Conread position: 99-332
Cow position: chrX:22488238-22488473 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 184
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 26

Conread position: 99-586
Cow position: chrX:20697038-20696554 (view UCSC Genome Browser custom track)
Alignm length: 497
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 128, 17

Conread position: 99-701
Cow position: chrX:21222985-21223588 (view UCSC Genome Browser custom track)
Alignm length: 619
Alignm identity: 457
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 23

Conread position: 99-759
Cow position: chrX:15127185-15126516 (view UCSC Genome Browser custom track)
Alignm length: 675
Alignm identity: 501
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 23

Conread position: 99-773
Cow position: chrX:16699357-16700036 (view UCSC Genome Browser custom track)
Alignm length: 690
Alignm identity: 513
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 23

Conread position: 99-773
Cow position: chrX:21829581-21830262 (view UCSC Genome Browser custom track)
Alignm length: 690
Alignm identity: 522
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 23

Conread position: 99-773
Cow position: chrX:23041066-23040389 (view UCSC Genome Browser custom track)
Alignm length: 692
Alignm identity: 522
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 23

Conread position: 99-773
Cow position: chrX:26528033-26528709 (view UCSC Genome Browser custom track)
Alignm length: 691
Alignm identity: 519
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 23

Conread position: 100-762
Cow position: chrX:20797036-20797690 (view UCSC Genome Browser custom track)
Alignm length: 673
Alignm identity: 456
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 18

Conread position: 100-773
Cow position: chrX:2482580-2481896 (view UCSC Genome Browser custom track)
Alignm length: 692
Alignm identity: 513
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 23

Conread position: 101-227
Cow position: chrX:26627974-26627843 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 108
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 14, 0

Conread position: 103-773
Cow position: chrX:23277079-23277760 (view UCSC Genome Browser custom track)
Alignm length: 691
Alignm identity: 523
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 35

Conread position: 105-380
Cow position: chrX:30056707-30056993 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 217
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 0

Conread position: 105-773
Cow position: chrX:320529-321199 (view UCSC Genome Browser custom track)
Alignm length: 681
Alignm identity: 500
Alignm E-value: 0
Alignm gaps (pig, cow): 124, 67

Conread position: 105-773
Cow position: chrX:970829-971509 (view UCSC Genome Browser custom track)
Alignm length: 685
Alignm identity: 518
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 428

Conread position: 105-773
Cow position: chrX:21058855-21059515 (view UCSC Genome Browser custom track)
Alignm length: 684
Alignm identity: 502
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 48

Conread position: 106-773
Cow position: chrX:29853504-29852831 (view UCSC Genome Browser custom track)
Alignm length: 683
Alignm identity: 515
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 15

Conread position: 110-772
Cow position: chrX:29285504-29286162 (view UCSC Genome Browser custom track)
Alignm length: 675
Alignm identity: 504
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 198

Conread position: 117-776
Cow position: chrX:22619241-22618562 (view UCSC Genome Browser custom track)
Alignm length: 683
Alignm identity: 485
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 503

Conread position: 119-632
Cow position: chrX:26427571-26427056 (view UCSC Genome Browser custom track)
Alignm length: 523
Alignm identity: 366
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 236

Conread position: 121-671
Cow position: chrX:29794040-29793491 (view UCSC Genome Browser custom track)
Alignm length: 560
Alignm identity: 407
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 9

Conread position: 121-671
Cow position: chrX:30173601-30173040 (view UCSC Genome Browser custom track)
Alignm length: 565
Alignm identity: 418
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 495

Conread position: 121-771
Cow position: chrX:5863468-5864126 (view UCSC Genome Browser custom track)
Alignm length: 667
Alignm identity: 480
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 218

Conread position: 121-773
Cow position: chrX:13413061-13412398 (view UCSC Genome Browser custom track)
Alignm length: 668
Alignm identity: 507
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 25

Conread position: 127-696
Cow position: chrX:20359974-20359394 (view UCSC Genome Browser custom track)
Alignm length: 584
Alignm identity: 427
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 485

Conread position: 127-756
Cow position: chrX:7751977-7752623 (view UCSC Genome Browser custom track)
Alignm length: 649
Alignm identity: 475
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 127

Conread position: 127-768
Cow position: chrX:13076620-13075969 (view UCSC Genome Browser custom track)
Alignm length: 656
Alignm identity: 485
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 429

Conread position: 127-771
Cow position: chrX:12353317-12353973 (view UCSC Genome Browser custom track)
Alignm length: 660
Alignm identity: 485
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 485

Conread position: 127-771
Cow position: chrX:13097194-13096540 (view UCSC Genome Browser custom track)
Alignm length: 659
Alignm identity: 487
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 429

Conread position: 127-771
Cow position: chrX:27426243-27425594 (view UCSC Genome Browser custom track)
Alignm length: 658
Alignm identity: 482
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 485

Conread position: 127-771
Cow position: chrX:28585057-28585711 (view UCSC Genome Browser custom track)
Alignm length: 659
Alignm identity: 480
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 172

Conread position: 127-771
Cow position: chrX:31493497-31494150 (view UCSC Genome Browser custom track)
Alignm length: 659
Alignm identity: 479
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 324

Conread position: 132-771
Cow position: chrX:31198529-31199183 (view UCSC Genome Browser custom track)
Alignm length: 658
Alignm identity: 486
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 479

Conread position: 133-771
Cow position: chrX:7481715-7482364 (view UCSC Genome Browser custom track)
Alignm length: 653
Alignm identity: 479
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 479

Conread position: 135-771
Cow position: chrX:5394916-5394278 (view UCSC Genome Browser custom track)
Alignm length: 651
Alignm identity: 466
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 234

Conread position: 142-771
Cow position: chrX:15980858-15980227 (view UCSC Genome Browser custom track)
Alignm length: 638
Alignm identity: 451
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 279

Conread position: 142-773
Cow position: chrX:29950492-29949873 (view UCSC Genome Browser custom track)
Alignm length: 644
Alignm identity: 461
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 336

Conread position: 163-773
Cow position: chrX:1547096-1547707 (view UCSC Genome Browser custom track)
Alignm length: 622
Alignm identity: 457
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 248

Conread position: 164-773
Cow position: chrX:20720106-20720729 (view UCSC Genome Browser custom track)
Alignm length: 627
Alignm identity: 466
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 443

Conread position: 165-773
Cow position: chrX:21589091-21589701 (view UCSC Genome Browser custom track)
Alignm length: 616
Alignm identity: 467
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 343

Conread position: 167-773
Cow position: chrX:21579595-21580199 (view UCSC Genome Browser custom track)
Alignm length: 620
Alignm identity: 464
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 114

Conread position: 168-771
Cow position: chrX:12288274-12287672 (view UCSC Genome Browser custom track)
Alignm length: 611
Alignm identity: 446
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 200

Conread position: 174-668
Cow position: chrX:27495055-27495546 (view UCSC Genome Browser custom track)
Alignm length: 505
Alignm identity: 375
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 13

Conread position: 185-773
Cow position: chrX:30711727-30712321 (view UCSC Genome Browser custom track)
Alignm length: 601
Alignm identity: 456
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 272

Conread position: 192-773
Cow position: chrX:41851049-41850465 (view UCSC Genome Browser custom track)
Alignm length: 597
Alignm identity: 455
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 134

Conread position: 196-774
Cow position: chrX:4796458-4797059 (view UCSC Genome Browser custom track)
Alignm length: 611
Alignm identity: 435
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 59

Conread position: 238-773
Cow position: chrX:28651352-28650820 (view UCSC Genome Browser custom track)
Alignm length: 544
Alignm identity: 404
Alignm E-value: 0
Alignm gaps (pig, cow): 129, 147

Conread position: 243-773
Cow position: chrX:15599167-15599699 (view UCSC Genome Browser custom track)
Alignm length: 544
Alignm identity: 411
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 31

Conread position: 247-771
Cow position: chrX:17478224-17477693 (view UCSC Genome Browser custom track)
Alignm length: 536
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 134, 65

Conread position: 260-773
Cow position: chrX:16016210-16015704 (view UCSC Genome Browser custom track)
Alignm length: 522
Alignm identity: 389
Alignm E-value: 0
Alignm gaps (pig, cow): 126, 166

Conread position: 275-743
Cow position: chrX:6884833-6884366 (view UCSC Genome Browser custom track)
Alignm length: 480
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 109, 53

Conread position: 276-773
Cow position: chrX:28627408-28626901 (view UCSC Genome Browser custom track)
Alignm length: 514
Alignm identity: 361
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 20

Conread position: 308-773
Cow position: chrX:24134994-24134518 (view UCSC Genome Browser custom track)
Alignm length: 484
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 17

Conread position: 313-771
Cow position: chrX:29173495-29173031 (view UCSC Genome Browser custom track)
Alignm length: 468
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 294

Conread position: 345-673
Cow position: chrX:38038555-38038878 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 233
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 41, 63

Conread position: 376-773
Cow position: chrX:18953346-18952947 (view UCSC Genome Browser custom track)
Alignm length: 405
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 5

Conread position: 380-771
Cow position: chrX:28758157-28757763 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 224

Conread position: 380-773
Cow position: chrX:22488489-22488879 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 84, 29

Conread position: 395-773
Cow position: chrX:22816204-22816583 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 8

Conread position: 400-773
Cow position: chrX:30366409-30366048 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 49

Conread position: 439-771
Cow position: chrX:30171436-30171101 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 45

Conread position: 439-773
Cow position: chrX:16041791-16041471 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 66

Conread position: 451-773
Cow position: chrX:30183509-30183186 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 149

Conread position: 459-734
Cow position: chrX:22129355-22129080 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 188
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 61, 139

Conread position: 464-773
Cow position: chrX:5297122-5296815 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 227
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 13

Conread position: 480-769
Cow position: chrX:14595294-14595575 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 206
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 40, 113

Conread position: 485-762
Cow position: chrX:12315308-12315033 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 205
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 26, 14

Conread position: 488-771
Cow position: chrX:16811994-16811711 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 198
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 31, 113

Conread position: 488-773
Cow position: chrX:23390068-23389783 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 109

Conread position: 496-773
Cow position: chrX:38148051-38148324 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 203
Alignm E-value: 8.99999e-40
Alignm gaps (pig, cow): 25, 57

Conread position: 501-734
Cow position: chrX:31372279-31372508 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 180
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 18, 98

Conread position: 502-773
Cow position: chrX:18610932-18610666 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 195
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 17, 49

Conread position: 511-710
Cow position: chrX:18534979-18535173 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 145
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 9, 93

Conread position: 528-773
Cow position: chrX:19874882-19875124 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 176
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 60, 70

Conread position: 530-773
Cow position: chrX:27315767-27316008 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 181
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 11, 58

Conread position: 549-773
Cow position: chrX:9093063-9093292 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 163
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 21, 43

Conread position: 576-770
Cow position: chrX:12183455-12183648 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 136
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 96, 15

Conread position: 611-763
Cow position: chrX:13082437-13082284 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 112
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 69, 0

Conread position: 617-771
Cow position: chrX:979172-979327 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 114
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 55, 0

Show alignments to all cow chromosomes.