Cow genome map

Conread name: LyN1-MLN01E060086

Conread position: 1-143
Cow position: chr1:21720563-21720703 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 110
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 104, 87

Conread position: 1-181
Cow position: chr1:33712418-33712598 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 145
Alignm E-value: 7e-40
Alignm gaps (pig, cow): 104, 137

Conread position: 1-201
Cow position: chr1:63502203-63502406 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 151
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 103, 0

Conread position: 1-220
Cow position: chr1:72981619-72981840 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 181
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 0

Conread position: 1-293
Cow position: chr1:40512694-40512410 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 227
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 78

Conread position: 1-305
Cow position: chr1:88269859-88269550 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 220
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 102, 158

Conread position: 1-349
Cow position: chr1:55321789-55321441 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 208, 111

Conread position: 1-355
Cow position: chr1:57366780-57366421 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 82, 272

Conread position: 1-361
Cow position: chr1:12061861-12061506 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 25

Conread position: 1-365
Cow position: chr1:30519042-30519406 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 56

Conread position: 1-375
Cow position: chr1:48246196-48246556 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 202, 91

Conread position: 1-376
Cow position: chr1:43571056-43570690 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 78

Conread position: 1-380
Cow position: chr1:82366531-82366913 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 97, 38

Conread position: 1-381
Cow position: chr1:8825402-8825779 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 72

Conread position: 1-381
Cow position: chr1:15026708-15027091 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 178, 156

Conread position: 1-381
Cow position: chr1:21999605-21999224 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 242

Conread position: 1-381
Cow position: chr1:22842998-22843372 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 261
Alignm E-value: 7e-40
Alignm gaps (pig, cow): 184, 38

Conread position: 1-381
Cow position: chr1:23052143-23052504 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 269
Alignm E-value: 8.00001e-42
Alignm gaps (pig, cow): 104, 32

Conread position: 1-381
Cow position: chr1:25179679-25179297 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 16

Conread position: 1-381
Cow position: chr1:28873426-28873810 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 237

Conread position: 1-381
Cow position: chr1:31403149-31402761 (view UCSC Genome Browser custom track)
Alignm length: 393
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 102, 225

Conread position: 1-381
Cow position: chr1:33551276-33551656 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 237

Conread position: 1-381
Cow position: chr1:49973839-49973458 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 241

Conread position: 1-381
Cow position: chr1:56143985-56143602 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 202, 236

Conread position: 1-381
Cow position: chr1:58336187-58336568 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 239

Conread position: 1-381
Cow position: chr1:63605428-63605046 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 243

Conread position: 1-381
Cow position: chr1:65386680-65387058 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 25

Conread position: 1-381
Cow position: chr1:69922086-69921705 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 242

Conread position: 1-381
Cow position: chr1:72081130-72081496 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 47

Conread position: 1-381
Cow position: chr1:72186528-72186149 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 103, 159

Conread position: 1-381
Cow position: chr1:76752301-76751916 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 243

Conread position: 1-381
Cow position: chr1:79456621-79456240 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 107, 242

Conread position: 1-381
Cow position: chr1:82923827-82923457 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 158

Conread position: 1-381
Cow position: chr1:88131123-88131506 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 237

Conread position: 1-381
Cow position: chr1:91892771-91892386 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 105, 243

Conread position: 1-381
Cow position: chr1:93854873-93855249 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 107, 163

Conread position: 1-381
Cow position: chr1:94660034-94660405 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 78

Conread position: 1-381
Cow position: chr1:102434687-102434308 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 242

Conread position: 1-382
Cow position: chr1:3385669-3385286 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 116

Conread position: 1-386
Cow position: chr1:30534672-30534283 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 242

Conread position: 1-386
Cow position: chr1:52358925-52358537 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 14

Conread position: 1-386
Cow position: chr1:67287180-67287558 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 78

Conread position: 1-386
Cow position: chr1:68607195-68606806 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 124

Conread position: 1-386
Cow position: chr1:73070704-73070320 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 238

Conread position: 1-395
Cow position: chr1:67315296-67315682 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 269
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 207, 34

Conread position: 2-113
Cow position: chr1:56193579-56193467 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 92
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 103, 0

Conread position: 2-245
Cow position: chr1:31330050-31329796 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 174
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 77, 246

Conread position: 2-320
Cow position: chr1:85882351-85882665 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 103, 71

Conread position: 2-341
Cow position: chr1:55156650-55156312 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 240
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 95, 11

Conread position: 2-354
Cow position: chr1:22905131-22905467 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 239
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 90, 58

Conread position: 2-356
Cow position: chr1:67327912-67327566 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 246
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 272, 96

Conread position: 2-361
Cow position: chr1:18027417-18027047 (view UCSC Genome Browser custom track)
Alignm length: 372
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 119, 346

Conread position: 2-381
Cow position: chr1:31365736-31365360 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 103, 160

Conread position: 2-381
Cow position: chr1:69403333-69403716 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 103, 236

Conread position: 2-384
Cow position: chr1:80358834-80358448 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 103, 237

Conread position: 3-341
Cow position: chr1:18013149-18012815 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 232
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 102, 159

Conread position: 3-356
Cow position: chr1:43985731-43985374 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 239
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 6, 84

Conread position: 3-377
Cow position: chr1:99913770-99914149 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 103, 236

Conread position: 3-381
Cow position: chr1:42736805-42737188 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 102, 236

Conread position: 4-290
Cow position: chr1:69250634-69250925 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 193
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 98, 22

Conread position: 4-377
Cow position: chr1:33389486-33389861 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 205, 53

Conread position: 4-386
Cow position: chr1:79636582-79636229 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 205, 17

Conread position: 5-354
Cow position: chr1:77511580-77511222 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 36

Conread position: 5-356
Cow position: chr1:86698862-86698511 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 237

Conread position: 5-359
Cow position: chr1:58883712-58883356 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 238

Conread position: 5-381
Cow position: chr1:17941432-17941054 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 160

Conread position: 5-381
Cow position: chr1:34692581-34692946 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 236, 73

Conread position: 5-381
Cow position: chr1:62244292-62243910 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 240

Conread position: 5-381
Cow position: chr1:76545185-76544806 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 145

Conread position: 5-386
Cow position: chr1:59209801-59209415 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 238

Conread position: 5-386
Cow position: chr1:97226355-97225976 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 103, 219

Conread position: 6-167
Cow position: chr1:61309362-61309524 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 130
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 99, 0

Conread position: 6-190
Cow position: chr1:30283192-30283008 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 144
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 99, 153

Conread position: 6-215
Cow position: chr1:89770311-89770096 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 176
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 137

Conread position: 6-222
Cow position: chr1:85780423-85780205 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 181
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 0

Conread position: 6-258
Cow position: chr1:28711267-28711520 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 195
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 232

Conread position: 6-307
Cow position: chr1:18880042-18879741 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 176

Conread position: 6-323
Cow position: chr1:20829240-20829558 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 232

Conread position: 6-380
Cow position: chr1:9382197-9381819 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 203, 13

Conread position: 6-385
Cow position: chr1:40574564-40574947 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 232

Conread position: 6-386
Cow position: chr1:5355477-5355861 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 232

Conread position: 6-386
Cow position: chr1:8554679-8555063 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 38

Conread position: 6-386
Cow position: chr1:11291755-11291375 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 169

Conread position: 6-386
Cow position: chr1:13450557-13450939 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 111

Conread position: 6-386
Cow position: chr1:17012388-17012004 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 231

Conread position: 6-386
Cow position: chr1:17036206-17035824 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 73

Conread position: 6-386
Cow position: chr1:29034652-29035023 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 10

Conread position: 6-386
Cow position: chr1:29362647-29363032 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 177

Conread position: 6-386
Cow position: chr1:31397041-31397427 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 267

Conread position: 6-386
Cow position: chr1:33851628-33852020 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 240

Conread position: 6-386
Cow position: chr1:39544120-39544501 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 232

Conread position: 6-386
Cow position: chr1:40053706-40054089 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 200, 235

Conread position: 6-386
Cow position: chr1:40684340-40683965 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 44

Conread position: 6-386
Cow position: chr1:53198900-53199275 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 233

Conread position: 6-386
Cow position: chr1:56490201-56490586 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 233

Conread position: 6-386
Cow position: chr1:56723505-56723893 (view UCSC Genome Browser custom track)
Alignm length: 393
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 162

Conread position: 6-386
Cow position: chr1:60339656-60340034 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 200, 136

Conread position: 6-386
Cow position: chr1:66999377-66999747 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 143

Conread position: 6-386
Cow position: chr1:67834790-67834404 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 139

Conread position: 6-386
Cow position: chr1:69766813-69767189 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 232

Conread position: 6-386
Cow position: chr1:71562222-71561838 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 237

Conread position: 6-386
Cow position: chr1:82564854-82565238 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 232

Conread position: 6-386
Cow position: chr1:82653004-82653400 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 244

Conread position: 6-386
Cow position: chr1:82912793-82912400 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 91, 169

Conread position: 6-386
Cow position: chr1:85792037-85792413 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 270, 91

Conread position: 6-386
Cow position: chr1:86547784-86547407 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 70

Conread position: 6-386
Cow position: chr1:89425924-89426308 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 232

Conread position: 6-386
Cow position: chr1:91899347-91899739 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 341

Conread position: 6-386
Cow position: chr1:102549593-102549958 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 126

Conread position: 6-387
Cow position: chr1:21087764-21088149 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 232

Conread position: 7-386
Cow position: chr1:57424487-57424106 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 20

Conread position: 7-386
Cow position: chr1:95239721-95240103 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 230

Conread position: 12-278
Cow position: chr1:30059278-30059546 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 183
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 24, 106

Conread position: 12-358
Cow position: chr1:57657167-57657504 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 39

Conread position: 14-184
Cow position: chr1:99675370-99675202 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 122
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 76, 0

Conread position: 15-307
Cow position: chr1:24651644-24651940 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 223

Conread position: 15-384
Cow position: chr1:77111657-77111296 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 184, 64

Conread position: 16-386
Cow position: chr1:31418150-31417782 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 89, 79

Conread position: 17-338
Cow position: chr1:7142707-7142390 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 232
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 9, 87

Conread position: 18-377
Cow position: chr1:26518518-26518160 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 134

Conread position: 18-386
Cow position: chr1:56163913-56164284 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 49

Conread position: 19-347
Cow position: chr1:52325769-52325449 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 230
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 189, 101

Conread position: 22-281
Cow position: chr1:98659522-98659254 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 190
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 41, 117

Conread position: 22-386
Cow position: chr1:5502338-5502703 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 214

Conread position: 24-365
Cow position: chr1:89481160-89481484 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 82, 133

Conread position: 26-323
Cow position: chr1:54377549-54377255 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 186
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 79, 35

Conread position: 27-349
Cow position: chr1:91751091-91750766 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 216

Conread position: 35-381
Cow position: chr1:25550345-25550691 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 202

Conread position: 44-387
Cow position: chr1:11860846-11860514 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 138

Conread position: 48-328
Cow position: chr1:56937637-56937358 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 200
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 54, 127

Conread position: 48-381
Cow position: chr1:84150593-84150928 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 228
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 52, 180

Conread position: 49-381
Cow position: chr1:40308669-40308995 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 189

Conread position: 57-381
Cow position: chr1:21936638-21936314 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 232
Alignm E-value: 8.99634e-43
Alignm gaps (pig, cow): 45, 109

Conread position: 60-381
Cow position: chr1:57263393-57263706 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 219
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 57, 39

Conread position: 73-381
Cow position: chr1:55777003-55777314 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 130, 164

Conread position: 80-366
Cow position: chr1:81842117-81841818 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 197
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 34, 42

Conread position: 86-338
Cow position: chr1:58178554-58178301 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 199
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 88

Conread position: 86-386
Cow position: chr1:57973234-57972942 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 210
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 22, 156

Conread position: 99-381
Cow position: chr1:6194684-6194964 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 138

Conread position: 99-386
Cow position: chr1:44044227-44044517 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 138

Conread position: 103-358
Cow position: chr1:9258945-9259202 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 198
Alignm E-value: 0
Alignm gaps (pig, cow): 105, 134

Conread position: 103-386
Cow position: chr1:1460735-1460480 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 210
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 106, 134

Conread position: 113-381
Cow position: chr1:57568395-57568665 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 96, 124

Conread position: 120-381
Cow position: chr1:86610614-86610876 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 191
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 147, 68

Conread position: 127-386
Cow position: chr1:33896215-33896477 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 110

Conread position: 128-381
Cow position: chr1:24443846-24443592 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 52

Conread position: 130-377
Cow position: chr1:50942789-50942542 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 165
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 107, 92

Conread position: 137-381
Cow position: chr1:76621200-76620952 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 189
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 52, 106

Conread position: 140-386
Cow position: chr1:77117081-77116835 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 198
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 102

Conread position: 163-381
Cow position: chr1:29979670-29979452 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 162
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 49, 7

Conread position: 181-387
Cow position: chr1:33712621-33712830 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 171
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 56

Conread position: 213-360
Cow position: chr1:47541192-47541340 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 121
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 105, 28

Conread position: 221-381
Cow position: chr1:62805601-62805447 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 128
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 99, 20

Conread position: 240-386
Cow position: chr1:72038965-72038824 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 119
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 129, 44

Conread position: 255-386
Cow position: chr1:20423129-20422995 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 109
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 63, 83

Conread position: 272-386
Cow position: chr1:18241894-18241780 (view UCSC Genome Browser custom track)
Alignm length: 116
Alignm identity: 92
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 97, 64

Conread position: 277-386
Cow position: chr1:49495602-49495490 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 98
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 43, 61

Conread position: 640-847
Cow position: chr1:31417793-31417582 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 166
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 152, 77

Conread position: 640-847
Cow position: chr1:76620958-76620754 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 149
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 61, 76

Conread position: 644-846
Cow position: chr1:76751918-76751718 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 159
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 71, 0

Conread position: 644-846
Cow position: chr1:102434310-102434109 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 156
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 71, 0

Conread position: 644-847
Cow position: chr1:21999226-21999024 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 158
Alignm E-value: 8.99634e-43
Alignm gaps (pig, cow): 71, 0

Conread position: 644-847
Cow position: chr1:25179299-25179100 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 158
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 65, 0

Conread position: 644-847
Cow position: chr1:28873808-28874010 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 160
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 71, 0

Conread position: 644-847
Cow position: chr1:62805449-62805251 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 158
Alignm E-value: 7.00005e-41
Alignm gaps (pig, cow): 69, 0

Conread position: 644-847
Cow position: chr1:65387056-65387249 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 156
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 71, 0

Conread position: 644-847
Cow position: chr1:79456242-79456040 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 161
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 71, 0

Conread position: 644-847
Cow position: chr1:82923459-82923258 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 155
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 71, 0

Conread position: 644-847
Cow position: chr1:85779710-85779517 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 158
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 65, 0

Conread position: 644-847
Cow position: chr1:88131504-88131703 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 156
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 71, 0

Conread position: 644-847
Cow position: chr1:94660403-94660604 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 164
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 0

Conread position: 645-847
Cow position: chr1:72984232-72984432 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 159
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 64, 0

Conread position: 645-847
Cow position: chr1:99914152-99914353 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 157
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 70, 0

Conread position: 650-846
Cow position: chr1:73070321-73070127 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 152
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 59, 0

Conread position: 650-847
Cow position: chr1:5502702-5502896 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 156
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 65, 0

Conread position: 650-847
Cow position: chr1:30534284-30534088 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 158
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 59, 0

Conread position: 651-840
Cow position: chr1:48246567-48246755 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 154
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 62, 0

Conread position: 651-847
Cow position: chr1:69921700-69921505 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 152
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 64, 0

Conread position: 660-847
Cow position: chr1:12061470-12061284 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 148
Alignm E-value: 7.00005e-41
Alignm gaps (pig, cow): 49, 0

Show alignments to all cow chromosomes.