Cow genome map

Conread name: LyN1-MLN01E060086

Conread position: 1-271
Cow position: chr16:25156266-25155997 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 198
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 101, 70

Conread position: 1-272
Cow position: chr16:47564021-47564283 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 190
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 183, 26

Conread position: 1-338
Cow position: chr16:5483929-5484268 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 237

Conread position: 1-353
Cow position: chr16:49235221-49234867 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 30

Conread position: 1-359
Cow position: chr16:15184413-15184761 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 109

Conread position: 1-377
Cow position: chr16:8816496-8816116 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 242

Conread position: 1-377
Cow position: chr16:15566351-15566730 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 30

Conread position: 1-380
Cow position: chr16:10203824-10203447 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 40

Conread position: 1-381
Cow position: chr16:407422-407041 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 242

Conread position: 1-381
Cow position: chr16:1567844-1567460 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 237

Conread position: 1-381
Cow position: chr16:2411358-2410974 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 237

Conread position: 1-381
Cow position: chr16:2727678-2727295 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 242

Conread position: 1-381
Cow position: chr16:10437851-10438229 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 205

Conread position: 1-381
Cow position: chr16:12538316-12537932 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 242

Conread position: 1-381
Cow position: chr16:23982920-23983302 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 163

Conread position: 1-381
Cow position: chr16:26663359-26663742 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 239

Conread position: 1-381
Cow position: chr16:27734182-27733799 (view UCSC Genome Browser custom track)
Alignm length: 402
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 216

Conread position: 1-381
Cow position: chr16:28471492-28471109 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 66

Conread position: 1-381
Cow position: chr16:29046632-29047015 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 160

Conread position: 1-381
Cow position: chr16:40296568-40296184 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 236

Conread position: 1-386
Cow position: chr16:25085251-25085617 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 144

Conread position: 1-386
Cow position: chr16:25170963-25171346 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 8

Conread position: 1-386
Cow position: chr16:29033658-29034048 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 20

Conread position: 1-387
Cow position: chr16:25257546-25257935 (view UCSC Genome Browser custom track)
Alignm length: 393
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 174

Conread position: 2-178
Cow position: chr16:18687518-18687341 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 141
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 102, 0

Conread position: 2-353
Cow position: chr16:16271986-16271648 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 103, 143

Conread position: 2-381
Cow position: chr16:23808031-23808417 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 46

Conread position: 2-381
Cow position: chr16:25441235-25441619 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 103, 238

Conread position: 2-381
Cow position: chr16:25457854-25457471 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 103, 241

Conread position: 3-386
Cow position: chr16:28437782-28437388 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 271
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 38, 116

Conread position: 5-361
Cow position: chr16:9930548-9930906 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 101, 234

Conread position: 5-377
Cow position: chr16:25341579-25341945 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 173

Conread position: 5-377
Cow position: chr16:43897657-43897284 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 156

Conread position: 5-381
Cow position: chr16:2483526-2483147 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 52

Conread position: 5-408
Cow position: chr16:23252892-23252487 (view UCSC Genome Browser custom track)
Alignm length: 412
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 141

Conread position: 6-323
Cow position: chr16:31832240-31832558 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 142

Conread position: 6-323
Cow position: chr16:47473185-47473507 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 223
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 101, 169

Conread position: 6-346
Cow position: chr16:2239125-2238793 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 107

Conread position: 6-347
Cow position: chr16:25188244-25188582 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 229

Conread position: 6-349
Cow position: chr16:53045962-53046308 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 231

Conread position: 6-386
Cow position: chr16:32346-32730 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 233

Conread position: 6-386
Cow position: chr16:5661458-5661841 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 200, 231

Conread position: 6-386
Cow position: chr16:10375970-10375601 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 157

Conread position: 6-386
Cow position: chr16:28170756-28170374 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 60

Conread position: 6-386
Cow position: chr16:34529936-34530310 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 232

Conread position: 6-386
Cow position: chr16:41163451-41163074 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 230

Conread position: 7-386
Cow position: chr16:4302722-4302343 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 75

Conread position: 8-313
Cow position: chr16:18498701-18498401 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 19

Conread position: 12-386
Cow position: chr16:24105325-24105700 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 67

Conread position: 14-357
Cow position: chr16:42739474-42739144 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 58

Conread position: 18-376
Cow position: chr16:31592287-31591927 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 225

Conread position: 20-349
Cow position: chr16:25892347-25892673 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 85, 53

Conread position: 22-381
Cow position: chr16:14666182-14665820 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 221

Conread position: 22-386
Cow position: chr16:836676-837040 (view UCSC Genome Browser custom track)
Alignm length: 372
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 86, 217

Conread position: 23-346
Cow position: chr16:26516785-26516457 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 225
Alignm E-value: 8e-37
Alignm gaps (pig, cow): 84, 125

Conread position: 31-229
Cow position: chr16:36232100-36231904 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 148
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 74, 136

Conread position: 32-375
Cow position: chr16:26650875-26651215 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 153

Conread position: 37-323
Cow position: chr16:36159378-36159666 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 199
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 62, 126

Conread position: 41-396
Cow position: chr16:15492878-15493235 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 198

Conread position: 66-386
Cow position: chr16:4479309-4478985 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 177

Conread position: 80-381
Cow position: chr16:15476531-15476834 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 158

Conread position: 80-386
Cow position: chr16:28197991-28197680 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 159

Conread position: 94-283
Cow position: chr16:15237447-15237635 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 140
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 11, 54

Conread position: 95-386
Cow position: chr16:49256488-49256209 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 217
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 113, 32

Conread position: 100-333
Cow position: chr16:6943312-6943548 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 183
Alignm E-value: 0
Alignm gaps (pig, cow): 106, 137

Conread position: 100-347
Cow position: chr16:12670172-12669931 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 178
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 215, 108

Conread position: 105-381
Cow position: chr16:30049211-30049477 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 210
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 212, 22

Conread position: 111-380
Cow position: chr16:1431906-1432182 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 89, 134

Conread position: 127-381
Cow position: chr16:37456289-37456034 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 197
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 44

Conread position: 128-357
Cow position: chr16:17057509-17057286 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 167
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 196, 90

Conread position: 129-318
Cow position: chr16:41755974-41755788 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 136
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 96, 113

Conread position: 145-342
Cow position: chr16:43852364-43852169 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 154
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 69, 43

Conread position: 154-381
Cow position: chr16:21185381-21185607 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 134
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 164, 87

Conread position: 166-381
Cow position: chr16:42671241-42671453 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 152
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 149, 68

Conread position: 187-386
Cow position: chr16:28377013-28377215 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 159
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 19, 50

Conread position: 188-381
Cow position: chr16:19152083-19151887 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 149
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 26, 56

Conread position: 192-384
Cow position: chr16:11283110-11283305 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 156
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 22, 50

Conread position: 208-365
Cow position: chr16:41166946-41166795 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 122
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 113, 15

Conread position: 219-381
Cow position: chr16:26374422-26374584 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 130
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 99, 18

Conread position: 243-381
Cow position: chr16:23536035-23535897 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 115
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 77, 24

Conread position: 622-847
Cow position: chr16:7676484-7676265 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 169
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 62, 0

Conread position: 635-847
Cow position: chr16:26663731-26663942 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 164
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 80, 0

Conread position: 644-846
Cow position: chr16:407043-406845 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 155
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 71, 0

Conread position: 644-847
Cow position: chr16:1567462-1567260 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 161
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 0

Conread position: 644-847
Cow position: chr16:2483149-2482947 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 157
Alignm E-value: 4.99983e-42
Alignm gaps (pig, cow): 71, 0

Conread position: 644-847
Cow position: chr16:2727297-2727096 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 159
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 71, 0

Conread position: 644-847
Cow position: chr16:10438227-10438444 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 165
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 151, 71

Conread position: 644-847
Cow position: chr16:12537934-12537735 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 158
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 71, 0

Conread position: 644-847
Cow position: chr16:15476832-15477033 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 155
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 71, 0

Conread position: 644-847
Cow position: chr16:31591929-31591727 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 160
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 73, 0

Conread position: 644-847
Cow position: chr16:40296186-40295984 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 158
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 71, 0

Conread position: 645-847
Cow position: chr16:8816113-8815914 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 160
Alignm E-value: 6.02558e-44
Alignm gaps (pig, cow): 70, 0

Conread position: 647-847
Cow position: chr16:49234670-49234468 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 162
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 0

Conread position: 651-838
Cow position: chr16:37456023-37455830 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 154
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 43, 75

Conread position: 653-847
Cow position: chr16:51405936-51405759 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 148
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 60, 0

Conread position: 659-847
Cow position: chr16:18498285-18498095 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 150
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 155, 0

Show alignments to all cow chromosomes.