Cow genome map

Conread name: LyN1-MLN01E060086

Conread position: 1-114
Cow position: chr17:13856583-13856470 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 97
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 1-210
Cow position: chr17:20488189-20488393 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 154
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 75, 116

Conread position: 1-229
Cow position: chr17:19269179-19268950 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 191
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 40

Conread position: 1-307
Cow position: chr17:20811708-20811401 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 204
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 28, 113

Conread position: 1-342
Cow position: chr17:15850585-15850929 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 107, 237

Conread position: 1-355
Cow position: chr17:4082248-4082589 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 244
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 27, 121

Conread position: 1-376
Cow position: chr17:14894341-14894720 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 237

Conread position: 1-376
Cow position: chr17:40805005-40805376 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 236

Conread position: 1-381
Cow position: chr17:3642649-3642268 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 240

Conread position: 1-381
Cow position: chr17:4060284-4060664 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 244

Conread position: 1-381
Cow position: chr17:6068747-6069121 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 41

Conread position: 1-381
Cow position: chr17:11087537-11087158 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 159

Conread position: 1-381
Cow position: chr17:18103498-18103123 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 106, 86

Conread position: 1-381
Cow position: chr17:24029812-24029440 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 136

Conread position: 1-385
Cow position: chr17:15156784-15156401 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 110, 175

Conread position: 1-386
Cow position: chr17:3708589-3708206 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 224, 43

Conread position: 1-386
Cow position: chr17:14040841-14040464 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 41

Conread position: 1-386
Cow position: chr17:20087560-20087175 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 242

Conread position: 1-386
Cow position: chr17:22132417-22132800 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 105, 237

Conread position: 2-381
Cow position: chr17:19019760-19020139 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 205, 122

Conread position: 4-260
Cow position: chr17:15384470-15384726 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 186
Alignm E-value: 8e-39
Alignm gaps (pig, cow): 99, 241

Conread position: 5-168
Cow position: chr17:25737854-25738018 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 129
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 100, 0

Conread position: 5-371
Cow position: chr17:1880281-1880656 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 204, 102

Conread position: 5-380
Cow position: chr17:1657650-1657285 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 261
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 101, 14

Conread position: 5-381
Cow position: chr17:2579806-2580187 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 234

Conread position: 5-381
Cow position: chr17:6260035-6260414 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 50

Conread position: 5-386
Cow position: chr17:18300204-18299826 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 209, 89

Conread position: 6-151
Cow position: chr17:181549-181693 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 111
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 67, 0

Conread position: 6-159
Cow position: chr17:24634140-24634294 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 119
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 99, 0

Conread position: 6-235
Cow position: chr17:43952377-43952146 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 178
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 0

Conread position: 6-323
Cow position: chr17:2030332-2030650 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 223
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 69, 55

Conread position: 6-381
Cow position: chr17:250349-250730 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 220

Conread position: 6-384
Cow position: chr17:15435977-15436359 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 232

Conread position: 6-386
Cow position: chr17:228122-227738 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 237

Conread position: 6-386
Cow position: chr17:1382628-1382249 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 239

Conread position: 6-386
Cow position: chr17:2262288-2262673 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 84, 233

Conread position: 6-386
Cow position: chr17:6119894-6120281 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 75

Conread position: 6-386
Cow position: chr17:8209292-8209677 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 233

Conread position: 6-386
Cow position: chr17:14216840-14216464 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 153

Conread position: 6-386
Cow position: chr17:15143181-15142798 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 232

Conread position: 6-386
Cow position: chr17:20665540-20665155 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 238

Conread position: 6-386
Cow position: chr17:23324268-23323884 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 237

Conread position: 6-386
Cow position: chr17:24782353-24782729 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 131

Conread position: 6-386
Cow position: chr17:31767853-31767472 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 233

Conread position: 6-386
Cow position: chr17:34156314-34156687 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 177

Conread position: 7-381
Cow position: chr17:151684-151309 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 44

Conread position: 9-381
Cow position: chr17:5226812-5227186 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 96, 228

Conread position: 10-287
Cow position: chr17:42265116-42265394 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 192
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 109, 157

Conread position: 11-343
Cow position: chr17:38873813-38874147 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 213
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 48, 57

Conread position: 13-381
Cow position: chr17:15324021-15324393 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 92, 225

Conread position: 13-381
Cow position: chr17:16857325-16856954 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 191, 229

Conread position: 21-361
Cow position: chr17:13695785-13695448 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 233
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 188, 86

Conread position: 22-342
Cow position: chr17:11376582-11376257 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 221

Conread position: 23-354
Cow position: chr17:20183642-20183957 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 85, 46

Conread position: 26-327
Cow position: chr17:2174095-2174381 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 212
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 79, 18

Conread position: 39-356
Cow position: chr17:18194050-18194359 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 225
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 59, 200

Conread position: 78-386
Cow position: chr17:43988760-43989070 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 199
Alignm E-value: 0
Alignm gaps (pig, cow): 128, 74

Conread position: 80-381
Cow position: chr17:20402669-20402986 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 231
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 26, 275

Conread position: 99-422
Cow position: chr17:41315704-41315394 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 216
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 103, 48

Conread position: 102-386
Cow position: chr17:9081157-9080870 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 112, 140

Conread position: 130-376
Cow position: chr17:6001134-6000885 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 180
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 58, 113

Conread position: 143-386
Cow position: chr17:11783171-11783414 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 152
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 63, 94

Conread position: 146-385
Cow position: chr17:2247741-2247501 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 183
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 56, 91

Conread position: 155-319
Cow position: chr17:25897360-25897524 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 121
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 54, 81

Conread position: 213-386
Cow position: chr17:181695-181868 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 135
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 111, 28

Conread position: 214-358
Cow position: chr17:2148631-2148772 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 112
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 60, 20

Conread position: 224-377
Cow position: chr17:14238870-14239023 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 122
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 96, 13

Conread position: 232-381
Cow position: chr17:19268417-19268266 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 119
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 88, 11

Conread position: 273-386
Cow position: chr17:20100020-20099908 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 94
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 93, 54

Conread position: 640-847
Cow position: chr17:22132789-22132990 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 158
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 62, 0

Conread position: 644-840
Cow position: chr17:6260412-6260614 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 157
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 51, 78

Conread position: 644-847
Cow position: chr17:18103125-18102926 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 158
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 71, 0

Conread position: 644-847
Cow position: chr17:24029442-24029240 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 163
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 0

Conread position: 645-847
Cow position: chr17:40805376-40805573 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 154
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 47, 0

Conread position: 651-847
Cow position: chr17:19268260-19268065 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 154
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 64, 0

Show alignments to all cow chromosomes.