Cow genome map
| Conread name: | LyN1-MLN01E060086 |
| Conread position: | 1-304 |
| Cow position: | chr21:21517995-21518294 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 217 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 104, 49 |
| Conread position: | 1-323 |
| Cow position: | chr21:33251982-33252298 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 83 |
| Conread position: | 1-351 |
| Cow position: | chr21:27282862-27283214 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 237 |
| Conread position: | 1-352 |
| Cow position: | chr21:359843-360177 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 47 |
| Conread position: | 1-360 |
| Cow position: | chr21:27565870-27566237 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 69 |
| Conread position: | 1-365 |
| Cow position: | chr21:30562278-30562640 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 205 |
| Conread position: | 1-373 |
| Cow position: | chr21:48116576-48116947 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 236 |
| Conread position: | 1-377 |
| Cow position: | chr21:10567144-10567522 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 231 |
| Conread position: | 1-381 |
| Cow position: | chr21:146398-146780 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 237 |
| Conread position: | 1-381 |
| Cow position: | chr21:467365-467729 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 77 |
| Conread position: | 1-381 |
| Cow position: | chr21:2883273-2882887 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 244 |
| Conread position: | 1-381 |
| Cow position: | chr21:3779242-3779619 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 239 |
| Conread position: | 1-381 |
| Cow position: | chr21:21915162-21915544 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 134 |
| Conread position: | 1-381 |
| Cow position: | chr21:35144232-35144613 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 237 |
| Conread position: | 1-381 |
| Cow position: | chr21:40271205-40270821 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 242 |
| Conread position: | 1-386 |
| Cow position: | chr21:2710975-2711348 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 28 |
| Conread position: | 1-386 |
| Cow position: | chr21:23812652-23813035 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 18 |
| Conread position: | 1-387 |
| Cow position: | chr21:2416689-2417072 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 208, 60 |
| Conread position: | 1-387 |
| Cow position: | chr21:2540608-2540233 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 15 |
| Conread position: | 1-395 |
| Cow position: | chr21:31559184-31558791 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 237 |
| Conread position: | 2-200 |
| Cow position: | chr21:46916057-46916251 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 152 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 103, 135 |
| Conread position: | 2-365 |
| Cow position: | chr21:23861796-23862161 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 180 |
| Conread position: | 2-367 |
| Cow position: | chr21:21925848-21925488 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 127 |
| Conread position: | 2-374 |
| Cow position: | chr21:29553-29918 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 174 |
| Conread position: | 2-387 |
| Cow position: | chr21:39425533-39425920 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 103, 95 |
| Conread position: | 4-315 |
| Cow position: | chr21:25975750-25976062 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 225 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 94, 109 |
| Conread position: | 4-381 |
| Cow position: | chr21:4093978-4094356 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 257 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 220, 88 |
| Conread position: | 5-381 |
| Cow position: | chr21:4299010-4299372 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 243 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 10, 60 |
| Conread position: | 5-381 |
| Cow position: | chr21:9892412-9892760 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 157 |
| Conread position: | 5-381 |
| Cow position: | chr21:10850556-10850931 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 233 |
| Conread position: | 5-386 |
| Cow position: | chr21:4589512-4589138 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 47 |
| Conread position: | 5-386 |
| Cow position: | chr21:13313245-13313619 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 235 |
| Conread position: | 5-386 |
| Cow position: | chr21:28735709-28736094 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 177 |
| Conread position: | 6-168 |
| Cow position: | chr21:2674131-2673971 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 118 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 43, 29 |
| Conread position: | 6-193 |
| Cow position: | chr21:6340040-6340228 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 148 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 99, 0 |
| Conread position: | 6-212 |
| Cow position: | chr21:20744031-20743825 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 158 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 101, 167 |
| Conread position: | 6-250 |
| Cow position: | chr21:26650515-26650760 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 150 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 99, 0 |
| Conread position: | 6-323 |
| Cow position: | chr21:7267050-7266740 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 7 |
| Conread position: | 6-351 |
| Cow position: | chr21:2511369-2511717 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 169 |
| Conread position: | 6-381 |
| Cow position: | chr21:4077310-4077687 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 102 |
| Conread position: | 6-386 |
| Cow position: | chr21:2476067-2475683 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 237 |
| Conread position: | 6-386 |
| Cow position: | chr21:4091123-4091506 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 18 |
| Conread position: | 6-386 |
| Cow position: | chr21:11406522-11406138 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 237 |
| Conread position: | 6-386 |
| Cow position: | chr21:11453182-11452800 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 158 |
| Conread position: | 6-386 |
| Cow position: | chr21:11506070-11506453 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 232 |
| Conread position: | 6-386 |
| Cow position: | chr21:12055527-12055146 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 237 |
| Conread position: | 6-386 |
| Cow position: | chr21:37046094-37046478 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 232 |
| Conread position: | 6-386 |
| Cow position: | chr21:37371719-37372097 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 232 |
| Conread position: | 7-381 |
| Cow position: | chr21:30599446-30599071 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 98, 236 |
| Conread position: | 12-384 |
| Cow position: | chr21:1287738-1287364 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 203, 99 |
| Conread position: | 15-381 |
| Cow position: | chr21:6622073-6622442 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 119 |
| Conread position: | 18-387 |
| Cow position: | chr21:47949552-47949915 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 111 |
| Conread position: | 20-234 |
| Cow position: | chr21:12803561-12803347 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 150 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 61, 74 |
| Conread position: | 20-376 |
| Cow position: | chr21:37148526-37148881 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 253 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 78, 15 |
| Conread position: | 22-386 |
| Cow position: | chr21:47941349-47941714 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 83, 98 |
| Conread position: | 23-331 |
| Cow position: | chr21:18819672-18819358 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 0 |
| Conread position: | 26-361 |
| Cow position: | chr21:27070767-27070429 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 217 |
| Conread position: | 33-381 |
| Cow position: | chr21:39087510-39087856 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 43 |
| Conread position: | 35-335 |
| Cow position: | chr21:2940106-2939805 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 213 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 44, 22 |
| Conread position: | 41-206 |
| Cow position: | chr21:6632206-6632038 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 121 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 41-381 |
| Cow position: | chr21:1192267-1192611 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 203 |
| Conread position: | 104-386 |
| Cow position: | chr21:26637624-26637346 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 110, 84 |
| Conread position: | 105-281 |
| Cow position: | chr21:28255777-28255961 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 104, 144 |
| Conread position: | 122-386 |
| Cow position: | chr21:2502461-2502727 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 203 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 114 |
| Conread position: | 157-380 |
| Cow position: | chr21:18817934-18817705 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 52, 120 |
| Conread position: | 191-381 |
| Cow position: | chr21:5840606-5840413 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 155 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 23, 52 |
| Conread position: | 193-386 |
| Cow position: | chr21:5015631-5015449 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 151 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 21, 49 |
| Conread position: | 208-386 |
| Cow position: | chr21:46916353-46916531 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 144 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 68, 33 |
| Conread position: | 213-386 |
| Cow position: | chr21:27149595-27149767 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 141 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 153, 28 |
| Conread position: | 224-376 |
| Cow position: | chr21:37323898-37323750 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 115 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 142, 17 |
| Conread position: | 272-386 |
| Cow position: | chr21:28256169-28256286 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 96 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 46, 66 |
| Conread position: | 616-847 |
| Cow position: | chr21:27070147-27069917 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 172 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 11, 100 |
| Conread position: | 640-847 |
| Cow position: | chr21:360488-360694 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 161 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 644-837 |
| Cow position: | chr21:30599073-30598880 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 148 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 58, 72 |
| Conread position: | 644-846 |
| Cow position: | chr21:26402639-26402438 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 164 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 644-847 |
| Cow position: | chr21:2882889-2882687 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 160 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 644-847 |
| Cow position: | chr21:5840415-5840213 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 165 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 644-847 |
| Cow position: | chr21:35144611-35144808 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 163 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 651-847 |
| Cow position: | chr21:18817698-18817503 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 152 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 66, 0 |
Show alignments to all cow chromosomes.