Cow genome map
| Conread name: | LyN1-MLN01E060086 |
| Conread position: | 1-168 |
| Cow position: | chr24:37217401-37217564 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 126 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 104, 114 |
| Conread position: | 1-260 |
| Cow position: | chr24:12232586-12232338 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 186 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 104, 121 |
| Conread position: | 1-323 |
| Cow position: | chr24:13302154-13301818 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 240 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 96, 255 |
| Conread position: | 1-364 |
| Cow position: | chr24:12130585-12130226 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 40 |
| Conread position: | 1-365 |
| Cow position: | chr24:16648596-16648231 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 51 |
| Conread position: | 1-377 |
| Cow position: | chr24:22971479-22971855 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 41 |
| Conread position: | 1-380 |
| Cow position: | chr24:29187672-29188054 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 231 |
| Conread position: | 1-381 |
| Cow position: | chr24:6669760-6669379 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 212, 118 |
| Conread position: | 1-381 |
| Cow position: | chr24:12086588-12086971 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 175 |
| Conread position: | 1-381 |
| Cow position: | chr24:12335387-12334994 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 251 |
| Conread position: | 1-381 |
| Cow position: | chr24:17696589-17696207 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 181 |
| Conread position: | 1-381 |
| Cow position: | chr24:19833774-19834155 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 106, 241 |
| Conread position: | 2-222 |
| Cow position: | chr24:7090782-7090557 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 173 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 104, 0 |
| Conread position: | 2-381 |
| Cow position: | chr24:4415140-4414767 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 103, 168 |
| Conread position: | 2-381 |
| Cow position: | chr24:33933756-33934139 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 103, 240 |
| Conread position: | 2-385 |
| Cow position: | chr24:14390170-14389766 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 103, 71 |
| Conread position: | 4-357 |
| Cow position: | chr24:14872572-14872217 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 243 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 109, 15 |
| Conread position: | 4-365 |
| Cow position: | chr24:6048982-6049319 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 247 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 113, 66 |
| Conread position: | 4-384 |
| Cow position: | chr24:1449645-1450012 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 101, 111 |
| Conread position: | 5-322 |
| Cow position: | chr24:9091894-9091574 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 47 |
| Conread position: | 5-341 |
| Cow position: | chr24:16472287-16472624 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 79 |
| Conread position: | 5-360 |
| Cow position: | chr24:36559369-36559013 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 214 |
| Conread position: | 5-380 |
| Cow position: | chr24:148226-147846 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 237 |
| Conread position: | 5-381 |
| Cow position: | chr24:12237623-12238008 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 242 |
| Conread position: | 5-381 |
| Cow position: | chr24:38637932-38638300 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 238 |
| Conread position: | 5-385 |
| Cow position: | chr24:6024717-6024335 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 63 |
| Conread position: | 6-183 |
| Cow position: | chr24:16084268-16084090 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 137 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 99, 0 |
| Conread position: | 6-206 |
| Cow position: | chr24:8030538-8030739 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 156 |
| Alignm E-value: | 8.99999e-40 |
| Alignm gaps (pig, cow): | 71, 170 |
| Conread position: | 6-216 |
| Cow position: | chr24:6434625-6434835 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 160 |
| Alignm E-value: | 8e-39 |
| Alignm gaps (pig, cow): | 99, 198 |
| Conread position: | 6-316 |
| Cow position: | chr24:7061781-7062092 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 232 |
| Conread position: | 6-343 |
| Cow position: | chr24:40549260-40549592 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 200, 96 |
| Conread position: | 6-351 |
| Cow position: | chr24:33738953-33738604 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 239 |
| Conread position: | 6-381 |
| Cow position: | chr24:6538350-6538720 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 152, 206 |
| Conread position: | 6-385 |
| Cow position: | chr24:22793559-22793946 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 235 |
| Conread position: | 6-386 |
| Cow position: | chr24:5992842-5992455 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 239 |
| Conread position: | 6-386 |
| Cow position: | chr24:6646087-6646471 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 232 |
| Conread position: | 6-386 |
| Cow position: | chr24:9188345-9187964 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 157 |
| Conread position: | 6-386 |
| Cow position: | chr24:13188560-13188941 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 238 |
| Conread position: | 6-386 |
| Cow position: | chr24:29305936-29305551 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 238 |
| Conread position: | 6-386 |
| Cow position: | chr24:43814151-43814534 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 107 |
| Conread position: | 6-386 |
| Cow position: | chr24:44017920-44018303 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 232 |
| Conread position: | 7-259 |
| Cow position: | chr24:14333860-14334111 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 182 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 100, 71 |
| Conread position: | 7-384 |
| Cow position: | chr24:12484930-12484550 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 98, 236 |
| Conread position: | 11-386 |
| Cow position: | chr24:6084463-6084838 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 227 |
| Conread position: | 12-327 |
| Cow position: | chr24:12796815-12796513 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 140 |
| Conread position: | 12-348 |
| Cow position: | chr24:1437305-1436978 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 232 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 13, 83 |
| Conread position: | 17-194 |
| Cow position: | chr24:30900727-30900555 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 128 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 97, 61 |
| Conread position: | 19-386 |
| Cow position: | chr24:6660095-6659723 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 219 |
| Conread position: | 26-380 |
| Cow position: | chr24:14754594-14754235 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 217 |
| Conread position: | 41-386 |
| Cow position: | chr24:23505440-23505095 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 166 |
| Conread position: | 58-333 |
| Cow position: | chr24:35870223-35869957 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 193 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 156, 48 |
| Conread position: | 74-386 |
| Cow position: | chr24:12110236-12109937 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 225 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 244, 43 |
| Conread position: | 84-252 |
| Cow position: | chr24:12569329-12569500 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 24, 54 |
| Conread position: | 94-381 |
| Cow position: | chr24:6059375-6059665 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 205 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 120, 96 |
| Conread position: | 99-386 |
| Cow position: | chr24:6328832-6328541 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 143 |
| Conread position: | 100-381 |
| Cow position: | chr24:9544545-9544829 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 103, 137 |
| Conread position: | 101-374 |
| Cow position: | chr24:31006914-31006649 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 184 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 203, 115 |
| Conread position: | 116-386 |
| Cow position: | chr24:19702004-19702255 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 198 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 218, 49 |
| Conread position: | 127-386 |
| Cow position: | chr24:12700310-12700047 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 202 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 110 |
| Conread position: | 128-386 |
| Cow position: | chr24:12143825-12143569 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 180 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 60, 34 |
| Conread position: | 166-349 |
| Cow position: | chr24:6145957-6146141 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 137 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 43, 14 |
| Conread position: | 189-386 |
| Cow position: | chr24:8030860-8031060 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 161 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 17, 48 |
| Conread position: | 189-386 |
| Cow position: | chr24:11866903-11866703 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 157 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 25, 53 |
| Conread position: | 194-386 |
| Cow position: | chr24:6435052-6435248 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 20, 145 |
| Conread position: | 240-381 |
| Cow position: | chr24:14280479-14280337 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 109 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 77, 99 |
| Conread position: | 244-386 |
| Cow position: | chr24:44325981-44326126 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 74, 94 |
| Conread position: | 273-386 |
| Cow position: | chr24:21960297-21960181 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 98 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 46, 65 |
| Conread position: | 640-847 |
| Cow position: | chr24:12129306-12129103 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 160 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 644-847 |
| Cow position: | chr24:4414769-4414567 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 159 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 650-847 |
| Cow position: | chr24:6406798-6406994 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 159 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 650-847 |
| Cow position: | chr24:22971861-22972055 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 156 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 65, 0 |
Show alignments to all cow chromosomes.