Cow genome map

Conread name: LyN1-MLN01E060086

Conread position: 1-143
Cow position: chr28:14705324-14705181 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 121
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 104, 0

Conread position: 1-160
Cow position: chr28:10617480-10617322 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 128
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 104, 34

Conread position: 1-235
Cow position: chr28:29820081-29820316 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 184
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 218

Conread position: 1-266
Cow position: chr28:10581638-10581371 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 0

Conread position: 1-293
Cow position: chr28:2083941-2084229 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 78

Conread position: 1-332
Cow position: chr28:34594326-34594660 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 72

Conread position: 1-351
Cow position: chr28:5751358-5751009 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 166

Conread position: 1-352
Cow position: chr28:5813356-5813712 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 106, 241

Conread position: 1-361
Cow position: chr28:2988893-2988533 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 105, 21

Conread position: 1-365
Cow position: chr28:10497668-10497312 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 173, 106

Conread position: 1-377
Cow position: chr28:1814520-1814142 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 207, 105

Conread position: 1-377
Cow position: chr28:5937823-5938206 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 105, 134

Conread position: 1-377
Cow position: chr28:7002337-7002718 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 202, 0

Conread position: 1-380
Cow position: chr28:12150650-12151030 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 243

Conread position: 1-381
Cow position: chr28:1167535-1167151 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 242

Conread position: 1-381
Cow position: chr28:1505212-1505595 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 237

Conread position: 1-381
Cow position: chr28:5113951-5113570 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 237

Conread position: 1-381
Cow position: chr28:12409881-12409500 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 242

Conread position: 1-381
Cow position: chr28:17388830-17389208 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 116

Conread position: 1-381
Cow position: chr28:22260804-22260426 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 103, 237

Conread position: 1-381
Cow position: chr28:26425904-26425525 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 242

Conread position: 1-381
Cow position: chr28:32792033-32791649 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 163

Conread position: 1-381
Cow position: chr28:33252659-33253029 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 116

Conread position: 1-384
Cow position: chr28:24667957-24668347 (view UCSC Genome Browser custom track)
Alignm length: 403
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 78

Conread position: 1-386
Cow position: chr28:5566492-5566885 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 241

Conread position: 2-235
Cow position: chr28:14913864-14914099 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 168
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 102, 131

Conread position: 2-276
Cow position: chr28:6656173-6655890 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 204
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 57, 41

Conread position: 2-365
Cow position: chr28:5798095-5798453 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 125, 10

Conread position: 5-268
Cow position: chr28:3020399-3020139 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 143

Conread position: 5-318
Cow position: chr28:31140434-31140120 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 210
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 10, 51

Conread position: 5-347
Cow position: chr28:782744-783087 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 158

Conread position: 5-377
Cow position: chr28:7740830-7741193 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 232

Conread position: 5-381
Cow position: chr28:3191895-3191525 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 74

Conread position: 5-381
Cow position: chr28:7789600-7789221 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 74

Conread position: 5-381
Cow position: chr28:13460320-13460699 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 96, 177

Conread position: 5-381
Cow position: chr28:17666947-17666576 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 112

Conread position: 5-385
Cow position: chr28:10071635-10072005 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 103, 68

Conread position: 5-386
Cow position: chr28:1387053-1386670 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 209, 148

Conread position: 6-126
Cow position: chr28:21359690-21359811 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 99
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 94, 0

Conread position: 6-250
Cow position: chr28:485217-484972 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 186
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 232

Conread position: 6-300
Cow position: chr28:5801346-5801640 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 206
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 92, 73

Conread position: 6-327
Cow position: chr28:10229870-10229555 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 220
Alignm E-value: 9e-32
Alignm gaps (pig, cow): 63, 178

Conread position: 6-386
Cow position: chr28:1953475-1953861 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 234

Conread position: 6-386
Cow position: chr28:2724577-2724193 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 237

Conread position: 6-386
Cow position: chr28:6538916-6538533 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 237

Conread position: 6-386
Cow position: chr28:6779991-6779608 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 232

Conread position: 6-386
Cow position: chr28:22233054-22232673 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 237

Conread position: 6-387
Cow position: chr28:7822603-7822988 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 232

Conread position: 6-387
Cow position: chr28:14750892-14751273 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 61

Conread position: 13-378
Cow position: chr28:10647026-10646677 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 247
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 92, 13

Conread position: 16-257
Cow position: chr28:8720937-8720694 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 195
Alignm E-value: 0
Alignm gaps (pig, cow): 6, 223

Conread position: 18-202
Cow position: chr28:24588447-24588634 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 140
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 68, 0

Conread position: 18-384
Cow position: chr28:24589209-24589581 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 222

Conread position: 22-381
Cow position: chr28:18520078-18519719 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 85, 115

Conread position: 27-386
Cow position: chr28:14195320-14194960 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 252
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 66, 170

Conread position: 29-217
Cow position: chr28:24704874-24705057 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 141
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 178, 81

Conread position: 35-364
Cow position: chr28:33259022-33259346 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 217
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 209, 78

Conread position: 39-353
Cow position: chr28:26489686-26490001 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 220
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 62, 198

Conread position: 41-325
Cow position: chr28:18100836-18100556 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 189
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 101, 167

Conread position: 41-345
Cow position: chr28:24304616-24304319 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 200
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 104, 66

Conread position: 42-384
Cow position: chr28:5765150-5765482 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 31

Conread position: 44-216
Cow position: chr28:7882008-7881836 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 140
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 61, 80

Conread position: 61-215
Cow position: chr28:7880929-7881084 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 120
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 44, 0

Conread position: 89-377
Cow position: chr28:8379268-8379559 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 148

Conread position: 91-333
Cow position: chr28:7810937-7811165 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 174
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 111, 78

Conread position: 117-386
Cow position: chr28:21359939-21360211 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 125

Conread position: 128-356
Cow position: chr28:29455011-29454783 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 161
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 70, 98

Conread position: 146-381
Cow position: chr28:14704897-14704662 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 192
Alignm E-value: 0
Alignm gaps (pig, cow): 174, 25

Conread position: 154-356
Cow position: chr28:10617291-10617094 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 151
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 55, 83

Conread position: 165-386
Cow position: chr28:18147240-18147021 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 165
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 152, 37

Conread position: 222-386
Cow position: chr28:29820570-29820736 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 123
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 95, 19

Conread position: 232-381
Cow position: chr28:32330168-32330018 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 116
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 9, 108

Conread position: 257-386
Cow position: chr28:7881843-7881715 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 100
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 109, 26

Conread position: 265-386
Cow position: chr28:17732450-17732326 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 101
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 55, 73

Conread position: 273-386
Cow position: chr28:8720331-8720220 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 94
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 96, 42

Conread position: 640-843
Cow position: chr28:10071995-10072196 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 164
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 0

Conread position: 640-844
Cow position: chr28:25169354-25169154 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 145
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 66, 81

Conread position: 640-847
Cow position: chr28:3019998-3019792 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 165
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 0

Conread position: 640-847
Cow position: chr28:7789227-7789025 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 160
Alignm E-value: 7.00005e-41
Alignm gaps (pig, cow): 73, 0

Conread position: 640-847
Cow position: chr28:33253023-33253229 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 162
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 75, 0

Conread position: 644-839
Cow position: chr28:12409502-12409311 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 150
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 71, 0

Conread position: 644-847
Cow position: chr28:783400-783598 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 153
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 71, 0

Conread position: 644-847
Cow position: chr28:1167153-1166951 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 161
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 111, 65

Conread position: 644-847
Cow position: chr28:17666578-17666381 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 157
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 71, 0

Conread position: 644-847
Cow position: chr28:32791651-32791450 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 154
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 99, 0

Conread position: 645-847
Cow position: chr28:5938209-5938410 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 159
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 70, 0

Conread position: 650-847
Cow position: chr28:8379786-8379981 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 157
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 65, 0

Conread position: 651-844
Cow position: chr28:10646670-10646477 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 153
Alignm E-value: 8.00001e-42
Alignm gaps (pig, cow): 54, 63

Show alignments to all cow chromosomes.