Cow genome map

Conread name: LyN1-MLN01E060086

Conread position: 1-215
Cow position: chr4:12587334-12587549 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 173
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 0

Conread position: 1-256
Cow position: chr4:21256383-21256640 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 194
Alignm E-value: 0
Alignm gaps (pig, cow): 101, 177

Conread position: 1-271
Cow position: chr4:33493860-33494133 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 177
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 0

Conread position: 1-335
Cow position: chr4:41120339-41120689 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 17

Conread position: 1-358
Cow position: chr4:47254964-47254621 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 253
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 187, 72

Conread position: 1-359
Cow position: chr4:17926219-17925857 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 240

Conread position: 1-365
Cow position: chr4:43319611-43319244 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 238

Conread position: 1-365
Cow position: chr4:45049263-45048896 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 242

Conread position: 1-366
Cow position: chr4:11111386-11111023 (view UCSC Genome Browser custom track)
Alignm length: 368
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 161, 47

Conread position: 1-377
Cow position: chr4:18516931-18517307 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 137

Conread position: 1-381
Cow position: chr4:355944-356322 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 136

Conread position: 1-381
Cow position: chr4:12241182-12240796 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 241

Conread position: 1-381
Cow position: chr4:26886825-26886442 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 17

Conread position: 1-381
Cow position: chr4:31669307-31669688 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 237

Conread position: 1-381
Cow position: chr4:36896403-36896785 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 237

Conread position: 1-381
Cow position: chr4:43881144-43881518 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 237

Conread position: 1-386
Cow position: chr4:6490329-6489945 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 159

Conread position: 1-386
Cow position: chr4:46664549-46664939 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 239

Conread position: 1-388
Cow position: chr4:48026432-48026822 (view UCSC Genome Browser custom track)
Alignm length: 393
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 243

Conread position: 1-401
Cow position: chr4:44725119-44725523 (view UCSC Genome Browser custom track)
Alignm length: 408
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 237

Conread position: 2-364
Cow position: chr4:6211886-6211514 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 254
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 33, 162

Conread position: 2-381
Cow position: chr4:11837604-11837234 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 265
Alignm E-value: 4.99997e-41
Alignm gaps (pig, cow): 20, 53

Conread position: 2-381
Cow position: chr4:25599465-25599083 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 103, 59

Conread position: 2-381
Cow position: chr4:51043215-51042840 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 103, 10

Conread position: 2-386
Cow position: chr4:60264122-60263745 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 103, 28

Conread position: 4-376
Cow position: chr4:54158684-54159038 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 263
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 25, 76

Conread position: 4-387
Cow position: chr4:4176829-4177208 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 260
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 94, 75

Conread position: 5-328
Cow position: chr4:28831381-28831692 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 14

Conread position: 5-338
Cow position: chr4:44925479-44925149 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 226
Alignm E-value: 6e-32
Alignm gaps (pig, cow): 20, 153

Conread position: 5-350
Cow position: chr4:9423403-9423065 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 222
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 103, 17

Conread position: 5-377
Cow position: chr4:16359921-16360287 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 233

Conread position: 5-381
Cow position: chr4:31565265-31564891 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 123

Conread position: 6-114
Cow position: chr4:158549-158658 (view UCSC Genome Browser custom track)
Alignm length: 110
Alignm identity: 89
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 99, 0

Conread position: 6-179
Cow position: chr4:27333468-27333642 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 133
Alignm E-value: 6e-33
Alignm gaps (pig, cow): 99, 0

Conread position: 6-183
Cow position: chr4:65223500-65223322 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 137
Alignm E-value: 8e-35
Alignm gaps (pig, cow): 99, 0

Conread position: 6-293
Cow position: chr4:19093459-19093746 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 200
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 7, 69

Conread position: 6-324
Cow position: chr4:9354742-9354424 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 232

Conread position: 6-325
Cow position: chr4:6268598-6268274 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 237

Conread position: 6-357
Cow position: chr4:14821508-14821165 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 208, 72

Conread position: 6-386
Cow position: chr4:100900-100516 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 237

Conread position: 6-386
Cow position: chr4:1930590-1930211 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 84

Conread position: 6-386
Cow position: chr4:3125829-3126209 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 232

Conread position: 6-386
Cow position: chr4:4416115-4416492 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 122

Conread position: 6-386
Cow position: chr4:5880199-5880583 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 222

Conread position: 6-386
Cow position: chr4:13548063-13548446 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 108

Conread position: 6-386
Cow position: chr4:16056635-16057017 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 76

Conread position: 6-386
Cow position: chr4:16326741-16326357 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 237

Conread position: 6-386
Cow position: chr4:18190439-18190812 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 232

Conread position: 6-386
Cow position: chr4:18424491-18424108 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 237

Conread position: 6-386
Cow position: chr4:32212201-32212585 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 237

Conread position: 6-386
Cow position: chr4:41954508-41954888 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 19

Conread position: 6-386
Cow position: chr4:41958163-41958543 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 19

Conread position: 13-380
Cow position: chr4:33072780-33072409 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 92, 230

Conread position: 14-343
Cow position: chr4:64984396-64984717 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 220
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 93, 67

Conread position: 21-365
Cow position: chr4:27295463-27295111 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 248
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 85, 229

Conread position: 22-381
Cow position: chr4:13493365-13493731 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 219

Conread position: 23-381
Cow position: chr4:61694456-61694118 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 22

Conread position: 35-229
Cow position: chr4:12607601-12607407 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 154
Alignm E-value: 6.00036e-42
Alignm gaps (pig, cow): 174, 81

Conread position: 41-381
Cow position: chr4:57984056-57984400 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 197

Conread position: 93-381
Cow position: chr4:29531753-29531467 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 144

Conread position: 99-381
Cow position: chr4:62568561-62568845 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 203
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 81, 133

Conread position: 106-386
Cow position: chr4:529533-529817 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 82, 132

Conread position: 112-386
Cow position: chr4:159296-159575 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 124

Conread position: 117-386
Cow position: chr4:27301300-27301051 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 197
Alignm E-value: 8e-35
Alignm gaps (pig, cow): 249, 27

Conread position: 128-381
Cow position: chr4:41332869-41333125 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 159
Alignm E-value: 9e-36
Alignm gaps (pig, cow): 60, 115

Conread position: 166-386
Cow position: chr4:27333903-27334129 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 175
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 40, 71

Conread position: 197-386
Cow position: chr4:603246-603432 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 152
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 128, 44

Conread position: 210-381
Cow position: chr4:58689847-58689680 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 124
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 31, 0

Conread position: 226-381
Cow position: chr4:12587593-12587750 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 125
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 94, 16

Conread position: 240-386
Cow position: chr4:17093596-17093448 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 114
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 78, 69

Conread position: 634-845
Cow position: chr4:41333112-41333317 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 160
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 11, 82

Conread position: 635-847
Cow position: chr4:58689691-58689480 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 163
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 74, 0

Conread position: 636-847
Cow position: chr4:1049859-1049652 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 163
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 9, 78

Conread position: 638-847
Cow position: chr4:43319240-43319030 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 167
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 0

Conread position: 639-847
Cow position: chr4:6206002-6206207 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 159
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 76, 0

Conread position: 640-847
Cow position: chr4:11110867-11110652 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 163
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 62, 0

Conread position: 640-847
Cow position: chr4:43881512-43881718 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 158
Alignm E-value: 4.99997e-41
Alignm gaps (pig, cow): 75, 0

Conread position: 640-847
Cow position: chr4:64853843-64853640 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 161
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 113, 0

Conread position: 644-844
Cow position: chr4:46664932-46665127 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 164
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 0

Conread position: 644-847
Cow position: chr4:356320-356522 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 155
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 58, 66

Conread position: 644-847
Cow position: chr4:25599085-25598884 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 160
Alignm E-value: 7.00649e-44
Alignm gaps (pig, cow): 71, 0

Conread position: 644-847
Cow position: chr4:31564893-31564696 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 153
Alignm E-value: 8e-35
Alignm gaps (pig, cow): 71, 0

Conread position: 644-847
Cow position: chr4:36896783-36896985 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 161
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 71, 0

Conread position: 650-846
Cow position: chr4:44726013-44726208 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 154
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 65, 0

Conread position: 650-847
Cow position: chr4:33072404-33072208 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 155
Alignm E-value: 5.99756e-43
Alignm gaps (pig, cow): 65, 0

Conread position: 660-809
Cow position: chr4:14820941-14820795 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 120
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 147, 57

Show alignments to all cow chromosomes.