Cow genome map
| Conread name: | LyN1-MLN01E070058 |
| Conread position: | 182-451 |
| Cow position: | chr12:37728304-37728031 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 189 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 79, 106 |
| Conread position: | 186-451 |
| Cow position: | chr12:18577998-18577729 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 184 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 75, 221 |
| Conread position: | 192-451 |
| Cow position: | chr12:37732631-37732893 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 180 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 69, 95 |
| Conread position: | 194-421 |
| Cow position: | chr12:47486978-47486751 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 161 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 186, 79 |
| Conread position: | 195-439 |
| Cow position: | chr12:4583085-4582847 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 183 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 195, 38 |
| Conread position: | 195-444 |
| Cow position: | chr12:12331366-12331611 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 181 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 196-403 |
| Cow position: | chr12:18094032-18093831 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 144 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 87, 73 |
| Conread position: | 196-435 |
| Cow position: | chr12:40715906-40716134 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 171 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 196-451 |
| Cow position: | chr12:48425852-48425602 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 183 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 223, 75 |
| Conread position: | 197-455 |
| Cow position: | chr12:1333377-1333115 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 168 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 197-456 |
| Cow position: | chr12:33458281-33458031 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 184 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 216, 59 |
| Conread position: | 198-371 |
| Cow position: | chr12:39781200-39781370 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 125 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 198-445 |
| Cow position: | chr12:47804294-47804051 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 172 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 89, 61 |
| Conread position: | 198-455 |
| Cow position: | chr12:749498-749255 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 186 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 229, 70 |
| Conread position: | 199-354 |
| Cow position: | chr12:8980914-8981067 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 120 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 10, 22 |
| Conread position: | 199-370 |
| Cow position: | chr12:11520312-11520147 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 199-382 |
| Cow position: | chr12:11080960-11081141 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 173, 70 |
| Conread position: | 199-409 |
| Cow position: | chr12:10763404-10763188 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 150 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 199-437 |
| Cow position: | chr12:29691057-29691298 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 176 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 43, 47 |
| Conread position: | 199-437 |
| Cow position: | chr12:41642571-41642334 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 170 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 152, 72 |
| Conread position: | 199-438 |
| Cow position: | chr12:40931476-40931710 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 223, 71 |
| Conread position: | 199-441 |
| Cow position: | chr12:5658607-5658848 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 177 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 161, 75 |
| Conread position: | 199-444 |
| Cow position: | chr12:5680823-5680578 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 176 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 93, 72 |
| Conread position: | 199-447 |
| Cow position: | chr12:5714776-5714523 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 175 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 62, 101 |
| Conread position: | 199-451 |
| Cow position: | chr12:7996550-7996304 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 189 |
| Alignm E-value: | 8.99634e-43 |
| Alignm gaps (pig, cow): | 219, 75 |
| Conread position: | 199-451 |
| Cow position: | chr12:25619239-25619482 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 174 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 223, 72 |
| Conread position: | 199-451 |
| Cow position: | chr12:30210628-30210373 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 62, 236 |
| Conread position: | 199-451 |
| Cow position: | chr12:45225850-45226098 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 47, 72 |
| Conread position: | 200-382 |
| Cow position: | chr12:14855951-14855772 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 137 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 22, 73 |
| Conread position: | 200-390 |
| Cow position: | chr12:34242187-34242375 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 200-407 |
| Cow position: | chr12:1883400-1883595 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 149 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 200-421 |
| Cow position: | chr12:30065071-30064859 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 162 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 200-436 |
| Cow position: | chr12:42478148-42477918 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 175 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 189, 68 |
| Conread position: | 200-445 |
| Cow position: | chr12:34465861-34466110 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 72, 94 |
| Conread position: | 200-451 |
| Cow position: | chr12:1031121-1030869 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 178 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 75, 92 |
| Conread position: | 200-451 |
| Cow position: | chr12:1505154-1504914 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 180 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 200-451 |
| Cow position: | chr12:25606845-25606593 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 197 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 130, 70 |
| Conread position: | 200-453 |
| Cow position: | chr12:30413801-30414059 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 69, 199 |
| Conread position: | 200-455 |
| Cow position: | chr12:18768934-18769186 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 187 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 165, 32 |
| Conread position: | 200-455 |
| Cow position: | chr12:42918602-42918357 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 179 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 219, 69 |
| Conread position: | 200-456 |
| Cow position: | chr12:29448782-29448529 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 196 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 128, 20 |
| Conread position: | 201-343 |
| Cow position: | chr12:24681956-24681816 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 113 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 201-391 |
| Cow position: | chr12:5497692-5497872 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 201-402 |
| Cow position: | chr12:3816624-3816423 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 155 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 110, 71 |
| Conread position: | 201-424 |
| Cow position: | chr12:18966619-18966837 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 163 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 158, 70 |
| Conread position: | 201-445 |
| Cow position: | chr12:23983801-23983558 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 94, 121 |
| Conread position: | 202-443 |
| Cow position: | chr12:27055739-27055504 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 190 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 221, 18 |
| Conread position: | 202-451 |
| Cow position: | chr12:1223212-1223452 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 182 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 218, 20 |
| Conread position: | 202-451 |
| Cow position: | chr12:16543442-16543685 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 180 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 74, 20 |
| Conread position: | 202-451 |
| Cow position: | chr12:30596605-30596360 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 182 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 129, 68 |
| Conread position: | 203-451 |
| Cow position: | chr12:24559494-24559247 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 194 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 68 |
| Conread position: | 204-391 |
| Cow position: | chr12:44908150-44907966 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 87, 65 |
| Conread position: | 207-344 |
| Cow position: | chr12:28017177-28017042 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 103 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 208-420 |
| Cow position: | chr12:3616132-3615923 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 151 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 53, 87 |
| Conread position: | 209-377 |
| Cow position: | chr12:25933812-25933648 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 124 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 223-451 |
| Cow position: | chr12:27038627-27038865 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 17, 9 |
| Conread position: | 224-446 |
| Cow position: | chr12:31528741-31528955 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 224-451 |
| Cow position: | chr12:32413630-32413402 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 172 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 151, 46 |
| Conread position: | 226-451 |
| Cow position: | chr12:27366038-27365817 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 167 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 198, 27 |
| Conread position: | 227-401 |
| Cow position: | chr12:13657632-13657804 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 132 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 164, 44 |
| Conread position: | 228-451 |
| Cow position: | chr12:31517054-31517282 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 33, 63 |
| Conread position: | 240-445 |
| Cow position: | chr12:31198866-31198661 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 161 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 179, 31 |
| Conread position: | 241-456 |
| Cow position: | chr12:14325175-14325383 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 162 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 178, 27 |
| Conread position: | 241-456 |
| Cow position: | chr12:23379669-23379463 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 248-450 |
| Cow position: | chr12:31429478-31429678 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 143 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 17, 44 |
| Conread position: | 249-450 |
| Cow position: | chr12:25312284-25312478 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 156 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 170, 22 |
| Conread position: | 259-451 |
| Cow position: | chr12:26217745-26217935 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 141 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 35, 12 |
| Conread position: | 264-451 |
| Cow position: | chr12:18765897-18766087 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 136 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 23, 27 |
| Conread position: | 290-451 |
| Cow position: | chr12:38484344-38484501 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 123 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 107, 31 |
| Conread position: | 311-456 |
| Cow position: | chr12:33756881-33757024 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 110 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 107, 135 |
| Conread position: | 317-456 |
| Cow position: | chr12:41596842-41596701 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 107 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 105, 0 |
| Conread position: | 349-451 |
| Cow position: | chr12:16851015-16851118 (view UCSC Genome Browser custom track) |
| Alignm length: | 104 |
| Alignm identity: | 85 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 70, 0 |
Show alignments to all cow chromosomes.