Cow genome map
| Conread name: | LyN1-MLN01E070058 |
| Conread position: | 178-449 |
| Cow position: | chr17:24880979-24880713 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 201 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 243, 91 |
| Conread position: | 187-451 |
| Cow position: | chr17:37138983-37138734 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 196 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 232, 31 |
| Conread position: | 187-455 |
| Cow position: | chr17:37778405-37778653 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 193 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 189-451 |
| Cow position: | chr17:5787609-5787865 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 186 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 32, 46 |
| Conread position: | 190-399 |
| Cow position: | chr17:34870310-34870100 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 36, 83 |
| Conread position: | 190-451 |
| Cow position: | chr17:11344432-11344187 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 181 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 233, 52 |
| Conread position: | 193-451 |
| Cow position: | chr17:11296882-11296610 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 185 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 68, 95 |
| Conread position: | 195-437 |
| Cow position: | chr17:23147640-23147406 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 184 |
| Alignm E-value: | 8.96831e-44 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 195-445 |
| Cow position: | chr17:28360050-28359816 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 176 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 227, 29 |
| Conread position: | 196-451 |
| Cow position: | chr17:10271704-10271466 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 192 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 197-387 |
| Cow position: | chr17:10769290-10769479 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 88, 74 |
| Conread position: | 197-409 |
| Cow position: | chr17:36173747-36173962 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 66, 33 |
| Conread position: | 197-420 |
| Cow position: | chr17:12091594-12091822 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 153 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 64, 95 |
| Conread position: | 197-451 |
| Cow position: | chr17:8279495-8279738 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 222, 23 |
| Conread position: | 198-367 |
| Cow position: | chr17:33925798-33925966 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 123 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 94, 73 |
| Conread position: | 198-399 |
| Cow position: | chr17:10314640-10314441 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 162, 71 |
| Conread position: | 198-410 |
| Cow position: | chr17:27505315-27505106 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 75, 0 |
| Conread position: | 198-424 |
| Cow position: | chr17:13229596-13229373 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 30, 74 |
| Conread position: | 198-451 |
| Cow position: | chr17:24580077-24580326 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 178 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 67, 11 |
| Conread position: | 198-451 |
| Cow position: | chr17:27819510-27819273 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 182 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 109, 22 |
| Conread position: | 198-451 |
| Cow position: | chr17:32457352-32457598 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 189 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 223, 34 |
| Conread position: | 198-456 |
| Cow position: | chr17:37414684-37414930 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 175 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 224, 24 |
| Conread position: | 199-402 |
| Cow position: | chr17:11655596-11655393 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 155 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 187, 71 |
| Conread position: | 199-409 |
| Cow position: | chr17:3619869-3620075 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 199-410 |
| Cow position: | chr17:35107416-35107209 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 147 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 33, 74 |
| Conread position: | 199-430 |
| Cow position: | chr17:5166860-5167074 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 163 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 221, 65 |
| Conread position: | 199-437 |
| Cow position: | chr17:36818254-36818019 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 172 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 193, 64 |
| Conread position: | 199-449 |
| Cow position: | chr17:18173613-18173848 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 176 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 220, 72 |
| Conread position: | 199-451 |
| Cow position: | chr17:26162208-26162456 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 181 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 111, 69 |
| Conread position: | 199-455 |
| Cow position: | chr17:33386639-33386380 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 187 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 160, 63 |
| Conread position: | 199-456 |
| Cow position: | chr17:7614159-7614417 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 193 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 130, 71 |
| Conread position: | 199-523 |
| Cow position: | chr17:2271214-2270894 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 235 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 220, 16 |
| Conread position: | 200-367 |
| Cow position: | chr17:7163676-7163843 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 121 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 200-382 |
| Cow position: | chr17:19239663-19239842 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 127 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 200-385 |
| Cow position: | chr17:12342266-12342447 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 132 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 87, 59 |
| Conread position: | 200-404 |
| Cow position: | chr17:14278280-14278077 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 154 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 200-410 |
| Cow position: | chr17:15634669-15634872 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 145 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 200-432 |
| Cow position: | chr17:31798232-31798462 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 192, 69 |
| Conread position: | 200-439 |
| Cow position: | chr17:38139725-38139488 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 174 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 208, 46 |
| Conread position: | 200-440 |
| Cow position: | chr17:26614517-26614751 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 175 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 219, 32 |
| Conread position: | 200-441 |
| Cow position: | chr17:35387784-35388024 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 175 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 220, 24 |
| Conread position: | 200-443 |
| Cow position: | chr17:9748967-9748723 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 179 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 31, 120 |
| Conread position: | 200-450 |
| Cow position: | chr17:10633831-10634089 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 184 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 79, 31 |
| Conread position: | 200-451 |
| Cow position: | chr17:31465024-31465281 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 185 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 112, 68 |
| Conread position: | 200-455 |
| Cow position: | chr17:27257001-27257265 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 194 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 127, 71 |
| Conread position: | 200-456 |
| Cow position: | chr17:143963-144213 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 186 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 220, 71 |
| Conread position: | 200-456 |
| Cow position: | chr17:10886195-10886441 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 182 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 225, 28 |
| Conread position: | 201-447 |
| Cow position: | chr17:1469601-1469350 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 60, 98 |
| Conread position: | 201-447 |
| Cow position: | chr17:7205635-7205392 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 181 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 105, 33 |
| Conread position: | 201-450 |
| Cow position: | chr17:30236406-30236181 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 184 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 201-451 |
| Cow position: | chr17:23803671-23803429 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 179 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 18, 51 |
| Conread position: | 201-451 |
| Cow position: | chr17:36400313-36400068 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 179 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 208, 19 |
| Conread position: | 201-451 |
| Cow position: | chr17:39016313-39016065 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 208, 17 |
| Conread position: | 201-456 |
| Cow position: | chr17:13715819-13716073 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 183 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 197, 48 |
| Conread position: | 204-417 |
| Cow position: | chr17:10221062-10220854 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 89, 0 |
| Conread position: | 206-449 |
| Cow position: | chr17:20216378-20216138 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 182 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 212, 65 |
| Conread position: | 206-451 |
| Cow position: | chr17:36216975-36217211 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 179 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 216, 54 |
| Conread position: | 207-388 |
| Cow position: | chr17:5381161-5380989 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 213-451 |
| Cow position: | chr17:39012922-39012696 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 173 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 215-411 |
| Cow position: | chr17:728152-728345 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 146 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 12, 57 |
| Conread position: | 224-366 |
| Cow position: | chr17:8215384-8215245 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 106 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 224-371 |
| Cow position: | chr17:12768614-12768758 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 112 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 63, 47 |
| Conread position: | 224-416 |
| Cow position: | chr17:33913381-33913573 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 142 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 164, 47 |
| Conread position: | 224-451 |
| Cow position: | chr17:4085948-4085726 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 174 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 53, 38 |
| Conread position: | 230-449 |
| Cow position: | chr17:19891811-19891594 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 180 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 189, 38 |
| Conread position: | 236-451 |
| Cow position: | chr17:1455761-1455969 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 184, 35 |
| Conread position: | 239-456 |
| Cow position: | chr17:8926039-8926250 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 160 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 176, 35 |
| Conread position: | 243-407 |
| Cow position: | chr17:7519565-7519402 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 116 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 246-451 |
| Cow position: | chr17:11171958-11171763 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 175, 25 |
| Conread position: | 247-451 |
| Cow position: | chr17:13600810-13601006 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 155 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 248-451 |
| Cow position: | chr17:4891193-4891392 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 151 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 142, 25 |
| Conread position: | 252-454 |
| Cow position: | chr17:25708121-25707924 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 156 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 170, 19 |
| Conread position: | 254-449 |
| Cow position: | chr17:34864731-34864546 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 140 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 165, 17 |
| Conread position: | 255-452 |
| Cow position: | chr17:8293617-8293814 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 147 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 79, 62 |
| Conread position: | 260-451 |
| Cow position: | chr17:17410453-17410261 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 12, 32 |
| Conread position: | 260-457 |
| Cow position: | chr17:28814334-28814535 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 141 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 27, 34 |
| Conread position: | 261-439 |
| Cow position: | chr17:34836330-34836152 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 126 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 11, 31 |
| Conread position: | 262-451 |
| Cow position: | chr17:10307878-10308057 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 138 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 264-451 |
| Cow position: | chr17:5296703-5296887 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 133 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 142, 57 |
| Conread position: | 264-451 |
| Cow position: | chr17:5985918-5986102 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 133 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 142, 57 |
| Conread position: | 270-451 |
| Cow position: | chr17:31856820-31856641 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 132 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 120, 17 |
| Conread position: | 270-467 |
| Cow position: | chr17:16371406-16371212 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 140 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 12, 21 |
| Conread position: | 271-451 |
| Cow position: | chr17:38263342-38263523 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 16, 20 |
| Conread position: | 276-403 |
| Cow position: | chr17:43640956-43641083 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 98 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.