Cow genome map
| Conread name: | LyN1-MLN01E070058 |
| Conread position: | 186-438 |
| Cow position: | chr28:20275320-20275074 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 181 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 232, 27 |
| Conread position: | 188-455 |
| Cow position: | chr28:13866033-13865773 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 187 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 75, 19 |
| Conread position: | 190-451 |
| Cow position: | chr28:34198918-34199173 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 185 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 191-451 |
| Cow position: | chr28:33284919-33285179 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 200 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 150, 80 |
| Conread position: | 193-398 |
| Cow position: | chr28:23703594-23703392 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 35, 25 |
| Conread position: | 193-451 |
| Cow position: | chr28:25564271-25564016 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 129, 73 |
| Conread position: | 194-451 |
| Cow position: | chr28:9237501-9237249 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 192 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 226, 77 |
| Conread position: | 195-437 |
| Cow position: | chr28:11180979-11181216 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 176 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 162, 23 |
| Conread position: | 195-451 |
| Cow position: | chr28:20963342-20963597 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 190 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 0 |
| Conread position: | 196-420 |
| Cow position: | chr28:17362416-17362636 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 165 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 218, 77 |
| Conread position: | 197-448 |
| Cow position: | chr28:5474848-5475093 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 217, 74 |
| Conread position: | 197-456 |
| Cow position: | chr28:33485831-33485564 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 188 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 111, 65 |
| Conread position: | 198-409 |
| Cow position: | chr28:31373288-31373084 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 146 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 198-451 |
| Cow position: | chr28:3769481-3769734 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 195 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 26, 78 |
| Conread position: | 198-454 |
| Cow position: | chr28:19564033-19564300 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 183 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 97, 224 |
| Conread position: | 198-455 |
| Cow position: | chr28:4274662-4274910 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 179 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 221, 65 |
| Conread position: | 198-458 |
| Cow position: | chr28:31165799-31166058 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 204 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 221, 72 |
| Conread position: | 199-354 |
| Cow position: | chr28:3940010-3940167 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 126 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 19, 74 |
| Conread position: | 199-412 |
| Cow position: | chr28:24500389-24500176 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 160 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 76, 64 |
| Conread position: | 199-420 |
| Cow position: | chr28:7157013-7156800 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 160 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 88, 20 |
| Conread position: | 199-449 |
| Cow position: | chr28:23668603-23668848 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 184 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 132, 34 |
| Conread position: | 199-450 |
| Cow position: | chr28:32366019-32365778 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 172 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 88, 22 |
| Conread position: | 199-451 |
| Cow position: | chr28:1202064-1202306 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 190 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 219, 33 |
| Conread position: | 199-455 |
| Cow position: | chr28:25825683-25825938 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 182 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 207, 70 |
| Conread position: | 199-468 |
| Cow position: | chr28:14508184-14508451 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 191 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 14, 72 |
| Conread position: | 200-351 |
| Cow position: | chr28:17624990-17625140 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 114 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 114, 0 |
| Conread position: | 200-355 |
| Cow position: | chr28:34749917-34749763 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 113 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 200-386 |
| Cow position: | chr28:26784056-26784244 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 131 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 61, 89 |
| Conread position: | 200-402 |
| Cow position: | chr28:5980098-5979904 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 147 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 200-409 |
| Cow position: | chr28:26719530-26719317 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 153 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 62, 90 |
| Conread position: | 200-410 |
| Cow position: | chr28:3822960-3823157 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 154 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 200-420 |
| Cow position: | chr28:9294311-9294529 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 200-451 |
| Cow position: | chr28:6643099-6643349 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 191 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 118 |
| Conread position: | 200-451 |
| Cow position: | chr28:19253659-19253414 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 190 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 34, 18 |
| Conread position: | 200-452 |
| Cow position: | chr28:3078496-3078749 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 52, 96 |
| Conread position: | 200-456 |
| Cow position: | chr28:23007542-23007804 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 178 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 63, 99 |
| Conread position: | 201-391 |
| Cow position: | chr28:16041044-16041225 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 135 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 201-406 |
| Cow position: | chr28:17345687-17345889 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 145 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 138, 42 |
| Conread position: | 201-432 |
| Cow position: | chr28:12999274-12999048 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 172 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 57, 29 |
| Conread position: | 202-451 |
| Cow position: | chr28:2517641-2517878 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 184 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 218, 47 |
| Conread position: | 202-451 |
| Cow position: | chr28:7539979-7540225 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 186 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 217, 67 |
| Conread position: | 202-481 |
| Cow position: | chr28:32366073-32366336 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 192 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 223, 18 |
| Conread position: | 204-451 |
| Cow position: | chr28:4764054-4763810 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 191 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 193, 31 |
| Conread position: | 204-478 |
| Cow position: | chr28:18934631-18934357 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 202 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 98, 64 |
| Conread position: | 206-451 |
| Cow position: | chr28:15678062-15677823 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 183 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 208-455 |
| Cow position: | chr28:9176586-9176824 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 192, 38 |
| Conread position: | 222-451 |
| Cow position: | chr28:11007361-11007125 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 168 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 7, 52 |
| Conread position: | 224-404 |
| Cow position: | chr28:25340427-25340253 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 224-452 |
| Cow position: | chr28:32844776-32844999 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 183, 47 |
| Conread position: | 224-455 |
| Cow position: | chr28:17601717-17601943 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 61, 47 |
| Conread position: | 225-358 |
| Cow position: | chr28:22421828-22421960 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 103 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 9, 46 |
| Conread position: | 225-423 |
| Cow position: | chr28:8336118-8335922 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 149 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 227-373 |
| Cow position: | chr28:15406213-15406071 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 109 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 227-451 |
| Cow position: | chr28:15081767-15081989 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 164 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 191, 44 |
| Conread position: | 230-441 |
| Cow position: | chr28:7805270-7805480 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 197, 43 |
| Conread position: | 239-437 |
| Cow position: | chr28:1604958-1604771 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 183, 28 |
| Conread position: | 244-409 |
| Cow position: | chr28:21873897-21873734 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 124 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 246-451 |
| Cow position: | chr28:11500749-11500952 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 162 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 82, 16 |
| Conread position: | 247-446 |
| Cow position: | chr28:20313413-20313214 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 142 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 14, 25 |
| Conread position: | 255-468 |
| Cow position: | chr28:12046786-12046998 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 164, 15 |
| Conread position: | 260-455 |
| Cow position: | chr28:27161203-27161397 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 141 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 6, 32 |
| Conread position: | 261-451 |
| Cow position: | chr28:4881117-4881302 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 11, 31 |
| Conread position: | 280-456 |
| Cow position: | chr28:2814406-2814578 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 139, 67 |
| Conread position: | 280-456 |
| Cow position: | chr28:13693852-13693681 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 136 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 138, 37 |
| Conread position: | 283-454 |
| Cow position: | chr28:21570290-21570119 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 128 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 136, 34 |
| Conread position: | 289-448 |
| Cow position: | chr28:4098924-4098766 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 130, 119 |
Show alignments to all cow chromosomes.