Cow genome map
| Conread name: | LyN1-MLN01E070058 |
| Conread position: | 183-451 |
| Cow position: | chr29:9512453-9512186 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 187 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 45, 37 |
| Conread position: | 190-451 |
| Cow position: | chr29:5976606-5976858 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 183 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 232, 32 |
| Conread position: | 195-354 |
| Cow position: | chr29:943003-942842 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 117 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 69, 122 |
| Conread position: | 195-451 |
| Cow position: | chr29:26129669-26129430 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 182 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 223, 27 |
| Conread position: | 197-382 |
| Cow position: | chr29:27688565-27688744 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 130 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 197-449 |
| Cow position: | chr29:356502-356249 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 177 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 29, 77 |
| Conread position: | 198-371 |
| Cow position: | chr29:21012169-21012337 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 133 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 198-432 |
| Cow position: | chr29:29302486-29302713 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 177 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 86, 22 |
| Conread position: | 198-437 |
| Cow position: | chr29:26318029-26317791 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 168 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 166, 71 |
| Conread position: | 198-451 |
| Cow position: | chr29:13634124-13634373 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 185 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 155, 60 |
| Conread position: | 198-451 |
| Cow position: | chr29:29559545-29559790 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 190 |
| Alignm E-value: | 8.00141e-43 |
| Alignm gaps (pig, cow): | 221, 53 |
| Conread position: | 198-451 |
| Cow position: | chr29:39023161-39023424 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 198 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 122, 72 |
| Conread position: | 198-451 |
| Cow position: | chr29:41083317-41083079 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 178 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 220, 20 |
| Conread position: | 199-346 |
| Cow position: | chr29:19666-19520 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 112 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 144, 70 |
| Conread position: | 199-356 |
| Cow position: | chr29:9662191-9662036 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 116 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 72, 0 |
| Conread position: | 199-447 |
| Cow position: | chr29:12625803-12626047 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 164 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 93, 64 |
| Conread position: | 199-454 |
| Cow position: | chr29:21174531-21174773 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 172 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 199-456 |
| Cow position: | chr29:6208236-6207987 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 183 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 222, 65 |
| Conread position: | 199-460 |
| Cow position: | chr29:6772307-6772051 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 191 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 13, 71 |
| Conread position: | 200-345 |
| Cow position: | chr29:8794528-8794382 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 113 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 200-384 |
| Cow position: | chr29:19607350-19607531 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 200-391 |
| Cow position: | chr29:10153618-10153810 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 141 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 75, 149 |
| Conread position: | 200-410 |
| Cow position: | chr29:7407730-7407932 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 200-445 |
| Cow position: | chr29:942795-942562 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 180 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 219, 20 |
| Conread position: | 200-451 |
| Cow position: | chr29:8862305-8862550 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 61, 73 |
| Conread position: | 200-451 |
| Cow position: | chr29:11005905-11005659 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 183 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 222, 22 |
| Conread position: | 200-451 |
| Cow position: | chr29:21186699-21186946 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 187 |
| Alignm E-value: | 8.00141e-43 |
| Alignm gaps (pig, cow): | 222, 69 |
| Conread position: | 200-451 |
| Cow position: | chr29:35442287-35442533 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 187 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 200-452 |
| Cow position: | chr29:24603959-24604212 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 184 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 43, 13 |
| Conread position: | 200-454 |
| Cow position: | chr29:21265935-21265685 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 191 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 219, 68 |
| Conread position: | 200-456 |
| Cow position: | chr29:15940463-15940711 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 180 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 189, 69 |
| Conread position: | 200-463 |
| Cow position: | chr29:5616693-5616954 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 198 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 201-345 |
| Cow position: | chr29:32080720-32080578 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 106 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 201-387 |
| Cow position: | chr29:19734835-19734660 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 135 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 201-432 |
| Cow position: | chr29:18963908-18963677 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 196, 70 |
| Conread position: | 201-443 |
| Cow position: | chr29:11366407-11366171 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 179 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 220, 17 |
| Conread position: | 201-451 |
| Cow position: | chr29:18021509-18021753 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 84, 70 |
| Conread position: | 201-454 |
| Cow position: | chr29:37960804-37961054 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 188 |
| Alignm E-value: | 8.00141e-43 |
| Alignm gaps (pig, cow): | 221, 50 |
| Conread position: | 202-410 |
| Cow position: | chr29:708958-709164 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 147 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 52, 70 |
| Conread position: | 202-450 |
| Cow position: | chr29:7663100-7663343 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 181 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 204, 25 |
| Conread position: | 202-451 |
| Cow position: | chr29:21675563-21675322 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 188 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 217, 37 |
| Conread position: | 202-451 |
| Cow position: | chr29:22895900-22895649 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 196 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 217, 68 |
| Conread position: | 202-455 |
| Cow position: | chr29:11677289-11677534 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 181 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 195, 69 |
| Conread position: | 202-488 |
| Cow position: | chr29:7054583-7054310 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 203 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 217, 16 |
| Conread position: | 202-526 |
| Cow position: | chr29:1340955-1340640 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 228 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 220, 69 |
| Conread position: | 204-407 |
| Cow position: | chr29:40337371-40337568 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 147 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 204-437 |
| Cow position: | chr29:26299140-26298914 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 173 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 218, 66 |
| Conread position: | 204-451 |
| Cow position: | chr29:4367894-4367650 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 192 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 218, 48 |
| Conread position: | 208-355 |
| Cow position: | chr29:3050335-3050192 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 113 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 210-451 |
| Cow position: | chr29:19509105-19508880 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 169 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 215-445 |
| Cow position: | chr29:14758704-14758928 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 172 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 206, 5 |
| Conread position: | 215-451 |
| Cow position: | chr29:19907513-19907283 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 19, 7 |
| Conread position: | 222-452 |
| Cow position: | chr29:38758876-38759093 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 224-451 |
| Cow position: | chr29:25426508-25426729 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 165 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 178, 47 |
| Conread position: | 226-448 |
| Cow position: | chr29:26985376-26985159 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 170 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 195, 52 |
| Conread position: | 230-451 |
| Cow position: | chr29:13126975-13127194 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 163 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 101, 40 |
| Conread position: | 239-456 |
| Cow position: | chr29:13554273-13554058 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 165 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 53, 31 |
| Conread position: | 241-451 |
| Cow position: | chr29:9937948-9938158 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 158 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 151, 55 |
| Conread position: | 242-450 |
| Cow position: | chr29:4444851-4444643 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 185, 28 |
| Conread position: | 242-451 |
| Cow position: | chr29:9912310-9912100 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 152 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 21, 45 |
| Conread position: | 242-451 |
| Cow position: | chr29:25923829-25924039 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 150 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 164, 30 |
| Conread position: | 243-447 |
| Cow position: | chr29:18695382-18695181 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 176, 25 |
| Conread position: | 243-451 |
| Cow position: | chr29:41530981-41530775 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 142 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 5, 21 |
| Conread position: | 246-451 |
| Cow position: | chr29:32655306-32655505 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 173, 24 |
| Conread position: | 249-456 |
| Cow position: | chr29:16055006-16055207 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 170, 25 |
| Conread position: | 250-451 |
| Cow position: | chr29:86886-87088 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 142, 43 |
| Conread position: | 253-451 |
| Cow position: | chr29:650396-650207 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 151 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 165, 17 |
| Conread position: | 254-365 |
| Cow position: | chr29:36435551-36435441 (view UCSC Genome Browser custom track) |
| Alignm length: | 112 |
| Alignm identity: | 89 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 255-456 |
| Cow position: | chr29:13639247-13639447 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 139 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 97, 16 |
| Conread position: | 266-451 |
| Cow position: | chr29:19897719-19897535 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 155, 54 |
| Conread position: | 271-451 |
| Cow position: | chr29:7103663-7103483 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 126 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 13, 23 |
| Conread position: | 273-446 |
| Cow position: | chr29:38581082-38580910 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 125 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 146, 68 |
| Conread position: | 285-451 |
| Cow position: | chr29:23233538-23233378 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 123 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 135, 32 |
Show alignments to all cow chromosomes.