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Cow genome map

           
Conread name:
           
LyN1-MLN01F010092
        

               
Conread position:
               
162-527
               

               
Cow position:
               
chr21:8950534-8950155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
139, 45
               

               
Conread position:
               
162-664
               

               
Cow position:
               
chr21:12154472-12153973 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
518
               

               
Alignm identity:
               
358
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 21
               

               
Conread position:
               
217-605
               

               
Cow position:
               
chr21:6696748-6697137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
92, 103
               

               
Conread position:
               
218-479
               

               
Cow position:
               
chr21:41287507-41287768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 104
               

               
Conread position:
               
226-539
               

               
Cow position:
               
chr21:47363445-47363775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 60
               

               
Conread position:
               
230-675
               

               
Cow position:
               
chr21:28028075-28027630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
10, 129
               

               
Conread position:
               
231-675
               

               
Cow position:
               
chr21:29069049-29069502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 106
               

               
Conread position:
               
233-673
               

               
Cow position:
               
chr21:37299732-37299296 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
101, 42
               

               
Conread position:
               
234-385
               

               
Cow position:
               
chr21:46609732-46609884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
92, 0
               

               
Conread position:
               
234-391
               

               
Cow position:
               
chr21:30368346-30368190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
9, 85
               

               
Conread position:
               
234-392
               

               
Cow position:
               
chr21:38943338-38943495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
108, 18
               

               
Conread position:
               
234-406
               

               
Cow position:
               
chr21:3379482-3379653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
56, 50
               

               
Conread position:
               
234-415
               

               
Cow position:
               
chr21:40930208-40930385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
234-417
               

               
Cow position:
               
chr21:27744300-27744113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
86, 105
               

               
Conread position:
               
234-417
               

               
Cow position:
               
chr21:36398300-36398474 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
234-422
               

               
Cow position:
               
chr21:15305025-15305215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
76, 18
               

               
Conread position:
               
234-431
               

               
Cow position:
               
chr21:42189490-42189686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
65, 19
               

               
Conread position:
               
234-446
               

               
Cow position:
               
chr21:26735668-26735466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
234-451
               

               
Cow position:
               
chr21:2536866-2537087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
84, 19
               

               
Conread position:
               
234-451
               

               
Cow position:
               
chr21:40820580-40820801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
92, 117
               

               
Conread position:
               
234-460
               

               
Cow position:
               
chr21:13225987-13225758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
81, 18
               

               
Conread position:
               
234-468
               

               
Cow position:
               
chr21:41610449-41610202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
73, 19
               

               
Conread position:
               
234-468
               

               
Cow position:
               
chr21:44591932-44592174 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
43, 196
               

               
Conread position:
               
234-468
               

               
Cow position:
               
chr21:46809495-46809736 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
94, 12
               

               
Conread position:
               
234-472
               

               
Cow position:
               
chr21:24797925-24797687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
95, 15
               

               
Conread position:
               
234-474
               

               
Cow position:
               
chr21:9417873-9418126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
61, 194
               

               
Conread position:
               
234-486
               

               
Cow position:
               
chr21:28907279-28907525 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
92, 15
               

               
Conread position:
               
234-499
               

               
Cow position:
               
chr21:12104625-12104367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
9, 94
               

               
Conread position:
               
234-503
               

               
Cow position:
               
chr21:13589033-13588761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
91, 117
               

               
Conread position:
               
234-504
               

               
Cow position:
               
chr21:44829486-44829764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
82, 18
               

               
Conread position:
               
234-528
               

               
Cow position:
               
chr21:28030549-28030263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
183, 16
               

               
Conread position:
               
234-539
               

               
Cow position:
               
chr21:17983241-17982939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
181, 15
               

               
Conread position:
               
234-539
               

               
Cow position:
               
chr21:36911008-36910703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
104, 73
               

               
Conread position:
               
234-542
               

               
Cow position:
               
chr21:41522141-41522447 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
8, 41
               

               
Conread position:
               
234-562
               

               
Cow position:
               
chr21:17890573-17890239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
92, 18
               

               
Conread position:
               
234-572
               

               
Cow position:
               
chr21:47719034-47719373 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
180, 24
               

               
Conread position:
               
234-591
               

               
Cow position:
               
chr21:45906350-45906714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
105, 122
               

               
Conread position:
               
234-595
               

               
Cow position:
               
chr21:10817305-10816925 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
84, 127
               

               
Conread position:
               
234-601
               

               
Cow position:
               
chr21:21686687-21686315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
67, 18
               

               
Conread position:
               
234-629
               

               
Cow position:
               
chr21:20153227-20152820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 15
               

               
Conread position:
               
234-637
               

               
Cow position:
               
chr21:17874919-17875331 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
70, 114
               

               
Conread position:
               
234-644
               

               
Cow position:
               
chr21:23568495-23568071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
181, 18
               

               
Conread position:
               
234-671
               

               
Cow position:
               
chr21:10264305-10263871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
84, 18
               

               
Conread position:
               
234-672
               

               
Cow position:
               
chr21:5970575-5971008 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
182, 73
               

               
Conread position:
               
234-672
               

               
Cow position:
               
chr21:14464859-14464406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 198
               

               
Conread position:
               
234-672
               

               
Cow position:
               
chr21:42135348-42135794 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
183, 86
               

               
Conread position:
               
234-672
               

               
Cow position:
               
chr21:46972895-46973296 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
24, 15
               

               
Conread position:
               
234-673
               

               
Cow position:
               
chr21:15444811-15445250 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
94, 158
               

               
Conread position:
               
234-673
               

               
Cow position:
               
chr21:32559097-32559525 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 90
               

               
Conread position:
               
234-674
               

               
Cow position:
               
chr21:14452504-14452057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
94, 45
               

               
Conread position:
               
234-675
               

               
Cow position:
               
chr21:23535983-23535543 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 18
               

               
Conread position:
               
235-399
               

               
Cow position:
               
chr21:9315072-9314913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
9, 76
               

               
Conread position:
               
235-409
               

               
Cow position:
               
chr21:31462828-31462658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
12, 82
               

               
Conread position:
               
235-473
               

               
Cow position:
               
chr21:12310742-12310508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
95, 14
               

               
Conread position:
               
235-486
               

               
Cow position:
               
chr21:20213501-20213759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
60, 202
               

               
Conread position:
               
235-511
               

               
Cow position:
               
chr21:7768696-7768425 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
183, 39
               

               
Conread position:
               
235-517
               

               
Cow position:
               
chr21:44724106-44724380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
183, 84
               

               
Conread position:
               
235-522
               

               
Cow position:
               
chr21:13656365-13656655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
91, 17
               

               
Conread position:
               
235-539
               

               
Cow position:
               
chr21:41140446-41140754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
93, 17
               

               
Conread position:
               
235-551
               

               
Cow position:
               
chr21:10072435-10072097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
91, 17
               

               
Conread position:
               
235-556
               

               
Cow position:
               
chr21:12339888-12339581 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
8, 39
               

               
Conread position:
               
235-570
               

               
Cow position:
               
chr21:1511556-1511219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
91, 72
               

               
Conread position:
               
235-579
               

               
Cow position:
               
chr21:30255986-30256350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
8, 166
               

               
Conread position:
               
235-593
               

               
Cow position:
               
chr21:44658832-44658487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
9, 71
               

               
Conread position:
               
235-672
               

               
Cow position:
               
chr21:30231426-30231872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 97
               

               
Conread position:
               
235-673
               

               
Cow position:
               
chr21:22718513-22718952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
92, 50
               

               
Conread position:
               
235-674
               

               
Cow position:
               
chr21:30592045-30592476 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
238, 14
               

               
Conread position:
               
236-382
               

               
Cow position:
               
chr21:42341673-42341815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
236-406
               

               
Cow position:
               
chr21:18055861-18056030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
124, 13
               

               
Conread position:
               
236-434
               

               
Cow position:
               
chr21:745438-745243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
183, 16
               

               
Conread position:
               
236-443
               

               
Cow position:
               
chr21:20174582-20174378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
7, 60
               

               
Conread position:
               
236-517
               

               
Cow position:
               
chr21:9256388-9256672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
58, 13
               

               
Conread position:
               
236-538
               

               
Cow position:
               
chr21:42209376-42209667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
182, 49
               

               
Conread position:
               
236-539
               

               
Cow position:
               
chr21:22014460-22014150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
43, 33
               

               
Conread position:
               
236-673
               

               
Cow position:
               
chr21:29001879-29002333 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 13
               

               
Conread position:
               
236-674
               

               
Cow position:
               
chr21:24296497-24296937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
82, 16
               

               
Conread position:
               
236-675
               

               
Cow position:
               
chr21:82327-81897 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
339
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 11
               

               
Conread position:
               
237-371
               

               
Cow position:
               
chr21:20166049-20165914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
237-417
               

               
Cow position:
               
chr21:3135600-3135781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
89, 39
               

               
Conread position:
               
237-434
               

               
Cow position:
               
chr21:28882450-28882250 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
93, 15
               

               
Conread position:
               
237-476
               

               
Cow position:
               
chr21:20163975-20163735 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
8.99999e-40
               

               
Alignm gaps (pig, cow):
               
24, 12
               

               
Conread position:
               
237-542
               

               
Cow position:
               
chr21:71855-71545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
6, 129
               

               
Conread position:
               
237-625
               

               
Cow position:
               
chr21:30222609-30222218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
181, 12
               

               
Conread position:
               
237-628
               

               
Cow position:
               
chr21:27810659-27810278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
86, 12
               

               
Conread position:
               
237-629
               

               
Cow position:
               
chr21:47315-46911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 205
               

               
Conread position:
               
237-662
               

               
Cow position:
               
chr21:32297240-32297671 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 213
               

               
Conread position:
               
237-676
               

               
Cow position:
               
chr21:45970912-45971332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 16
               

               
Conread position:
               
238-413
               

               
Cow position:
               
chr21:42455125-42454953 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
93, 47
               

               
Conread position:
               
238-425
               

               
Cow position:
               
chr21:31658888-31659070 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
238-441
               

               
Cow position:
               
chr21:1464609-1464407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
88, 15
               

               
Conread position:
               
238-451
               

               
Cow position:
               
chr21:30145365-30145576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
8, 84
               

               
Conread position:
               
238-470
               

               
Cow position:
               
chr21:40291482-40291713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
178, 90
               

               
Conread position:
               
238-476
               

               
Cow position:
               
chr21:8713691-8713932 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
93, 15
               

               
Conread position:
               
238-515
               

               
Cow position:
               
chr21:10148265-10147980 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
88, 11
               

               
Conread position:
               
238-539
               

               
Cow position:
               
chr21:33580677-33580384 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
169, 14
               

               
Conread position:
               
238-592
               

               
Cow position:
               
chr21:17559650-17560023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
76, 16
               

               
Conread position:
               
238-605
               

               
Cow position:
               
chr21:23979912-23980289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 189
               

               
Conread position:
               
238-643
               

               
Cow position:
               
chr21:957936-957526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
186, 90
               

               
Conread position:
               
238-664
               

               
Cow position:
               
chr21:15584157-15584573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 15
               

               
Conread position:
               
238-670
               

               
Cow position:
               
chr21:9301491-9301038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
75, 15
               

               
Conread position:
               
238-672
               

               
Cow position:
               
chr21:13584785-13585230 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 190
               

               
Conread position:
               
238-672
               

               
Cow position:
               
chr21:41621393-41620949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 8
               

               
Conread position:
               
238-673
               

               
Cow position:
               
chr21:18568371-18568821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 11
               

               
Conread position:
               
238-673
               

               
Cow position:
               
chr21:37706145-37706578 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 200
               

               
Conread position:
               
238-673
               

               
Cow position:
               
chr21:40134412-40133984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
179, 14
               

               
Conread position:
               
238-674
               

               
Cow position:
               
chr21:38918468-38918042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 14
               

               
Conread position:
               
238-674
               

               
Cow position:
               
chr21:41156137-41155688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 14
               

               
Conread position:
               
238-697
               

               
Cow position:
               
chr21:34010128-34010584 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
346
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 105
               

               
Conread position:
               
239-417
               

               
Cow position:
               
chr21:12473796-12473972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
103, 89
               

               
Conread position:
               
239-417
               

               
Cow position:
               
chr21:26828705-26828883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
89, 160
               

               
Conread position:
               
239-425
               

               
Cow position:
               
chr21:3178111-3177927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
87, 34
               

               
Conread position:
               
239-427
               

               
Cow position:
               
chr21:15271173-15271359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
239-427
               

               
Cow position:
               
chr21:21940145-21940329 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
239-431
               

               
Cow position:
               
chr21:38482648-38482454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
75, 177
               

               
Conread position:
               
239-431
               

               
Cow position:
               
chr21:41738174-41737981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
87, 46
               

               
Conread position:
               
239-452
               

               
Cow position:
               
chr21:37928917-37928700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
89, 37
               

               
Conread position:
               
239-465
               

               
Cow position:
               
chr21:39394015-39393786 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
27, 95
               

               
Conread position:
               
239-472
               

               
Cow position:
               
chr21:9278794-9278554 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
87, 224
               

               
Conread position:
               
239-473
               

               
Cow position:
               
chr21:12322764-12322533 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
50, 45
               

               
Conread position:
               
239-477
               

               
Cow position:
               
chr21:22851181-22850948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
175, 71
               

               
Conread position:
               
239-539
               

               
Cow position:
               
chr21:19059825-19060124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
94, 120
               

               
Conread position:
               
239-542
               

               
Cow position:
               
chr21:10656836-10657142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
56, 13
               

               
Conread position:
               
239-570
               

               
Cow position:
               
chr21:40266390-40266049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
86, 113
               

               
Conread position:
               
239-592
               

               
Cow position:
               
chr21:13753137-13752793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
87, 35
               

               
Conread position:
               
239-617
               

               
Cow position:
               
chr21:18155298-18155689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
60, 46
               

               
Conread position:
               
239-671
               

               
Cow position:
               
chr21:27521076-27521497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
176, 22
               

               
Conread position:
               
239-671
               

               
Cow position:
               
chr21:47761037-47760606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 122
               

               
Conread position:
               
239-672
               

               
Cow position:
               
chr21:13634304-13633870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
173, 95
               

               
Conread position:
               
239-674
               

               
Cow position:
               
chr21:25345130-25344705 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
59, 46
               

               
Conread position:
               
239-676
               

               
Cow position:
               
chr21:13034769-13035222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
8.99999e-40
               

               
Alignm gaps (pig, cow):
               
94, 121
               

               
Conread position:
               
240-381
               

               
Cow position:
               
chr21:37479325-37479469 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
63, 99
               

               
Conread position:
               
240-382
               

               
Cow position:
               
chr21:11761827-11761686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
240-402
               

               
Cow position:
               
chr21:43655967-43655805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
86, 115
               

               
Conread position:
               
240-404
               

               
Cow position:
               
chr21:45376212-45376049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
94, 0
               

               
Conread position:
               
240-405
               

               
Cow position:
               
chr21:6042054-6041884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
240-409
               

               
Cow position:
               
chr21:48334520-48334696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
59, 102
               

               
Conread position:
               
240-411
               

               
Cow position:
               
chr21:29011711-29011876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
87, 0
               

               
Conread position:
               
240-414
               

               
Cow position:
               
chr21:45537456-45537273 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
240-417
               

               
Cow position:
               
chr21:37360974-37361154 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
29, 80
               

               
Conread position:
               
240-417
               

               
Cow position:
               
chr21:44732778-44732955 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
94, 165
               

               
Conread position:
               
240-418
               

               
Cow position:
               
chr21:32272194-32272007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
67, 13
               

               
Conread position:
               
240-421
               

               
Cow position:
               
chr21:39845868-39845677 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
240-422
               

               
Cow position:
               
chr21:8986291-8986104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
240-423
               

               
Cow position:
               
chr21:438821-438644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
240-431
               

               
Cow position:
               
chr21:29418838-29418643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
18, 178
               

               
Conread position:
               
240-459
               

               
Cow position:
               
chr21:25014775-25014982 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
240-464
               

               
Cow position:
               
chr21:41041213-41040983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
240-474
               

               
Cow position:
               
chr21:21616041-21615811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
178, 33
               

               
Conread position:
               
240-475
               

               
Cow position:
               
chr21:17252712-17252950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
99, 196
               

               
Conread position:
               
240-503
               

               
Cow position:
               
chr21:41917974-41918247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
75, 45
               

               
Conread position:
               
240-513
               

               
Cow position:
               
chr21:32392798-32393061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
86, 13
               

               
Conread position:
               
240-531
               

               
Cow position:
               
chr21:38720514-38720224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
8.99999e-40
               

               
Alignm gaps (pig, cow):
               
80, 45
               

               
Conread position:
               
240-534
               

               
Cow position:
               
chr21:8545755-8546049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
63, 45
               

               
Conread position:
               
240-535
               

               
Cow position:
               
chr21:13395846-13395565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
149, 36
               

               
Conread position:
               
240-539
               

               
Cow position:
               
chr21:21907177-21907466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
26, 13
               

               
Conread position:
               
240-539
               

               
Cow position:
               
chr21:28919267-28919561 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
179, 12
               

               
Conread position:
               
240-562
               

               
Cow position:
               
chr21:11779273-11779594 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
72, 93
               

               
Conread position:
               
240-578
               

               
Cow position:
               
chr21:40432729-40432368 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
75, 217
               

               
Conread position:
               
240-590
               

               
Cow position:
               
chr21:6998206-6997846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
175, 45
               

               
Conread position:
               
240-596
               

               
Cow position:
               
chr21:8207022-8206674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
184, 70
               

               
Conread position:
               
240-597
               

               
Cow position:
               
chr21:6713259-6713625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 45
               

               
Conread position:
               
240-605
               

               
Cow position:
               
chr21:10673375-10673024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
184, 45
               

               
Conread position:
               
240-630
               

               
Cow position:
               
chr21:20260032-20260449 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 216
               

               
Conread position:
               
240-640
               

               
Cow position:
               
chr21:12461704-12462109 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 85
               

               
Conread position:
               
240-648
               

               
Cow position:
               
chr21:29978496-29978907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 70
               

               
Conread position:
               
240-666
               

               
Cow position:
               
chr21:40589215-40589647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 96
               

               
Conread position:
               
240-670
               

               
Cow position:
               
chr21:42841320-42841761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 298
               

               
Conread position:
               
240-672
               

               
Cow position:
               
chr21:5898144-5898568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
184, 20
               

               
Conread position:
               
240-672
               

               
Cow position:
               
chr21:37480229-37479786 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
152, 88
               

               
Conread position:
               
240-672
               

               
Cow position:
               
chr21:39888461-39888914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 139
               

               
Conread position:
               
240-672
               

               
Cow position:
               
chr21:42501317-42500862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
240-673
               

               
Cow position:
               
chr21:641849-641413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
174, 80
               

               
Conread position:
               
240-673
               

               
Cow position:
               
chr21:643584-643162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 9
               

               
Conread position:
               
240-673
               

               
Cow position:
               
chr21:4400058-4399628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
174, 44
               

               
Conread position:
               
240-673
               

               
Cow position:
               
chr21:6051770-6051335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
340
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 181
               

               
Conread position:
               
240-673
               

               
Cow position:
               
chr21:28733647-28734083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 25
               

               
Conread position:
               
240-673
               

               
Cow position:
               
chr21:33982549-33982980 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
243, 70
               

               
Conread position:
               
240-673
               

               
Cow position:
               
chr21:34738836-34738427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
369, 32
               

               
Conread position:
               
240-673
               

               
Cow position:
               
chr21:38449187-38449623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
179, 74
               

               
Conread position:
               
240-673
               

               
Cow position:
               
chr21:38901028-38900603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
176, 67
               

               
Conread position:
               
240-674
               

               
Cow position:
               
chr21:3585100-3585530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 9
               

               
Conread position:
               
240-675
               

               
Cow position:
               
chr21:5427191-5426770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
176, 13
               

               
Conread position:
               
240-675
               

               
Cow position:
               
chr21:22193830-22194284 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
74, 13
               

               
Conread position:
               
241-450
               

               
Cow position:
               
chr21:11182813-11182606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
177, 48
               

               
Conread position:
               
241-460
               

               
Cow position:
               
chr21:30938401-30938629 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
6, 89
               

               
Conread position:
               
241-466
               

               
Cow position:
               
chr21:29658538-29658313 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
106, 84
               

               
Conread position:
               
241-467
               

               
Cow position:
               
chr21:27677747-27677518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
85, 177
               

               
Conread position:
               
241-468
               

               
Cow position:
               
chr21:6851429-6851207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
177, 69
               

               
Conread position:
               
241-471
               

               
Cow position:
               
chr21:42145083-42144858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
176, 44
               

               
Conread position:
               
241-472
               

               
Cow position:
               
chr21:16498778-16498550 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
167, 9
               

               
Conread position:
               
241-472
               

               
Cow position:
               
chr21:31279517-31279288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
174, 84
               

               
Conread position:
               
241-521
               

               
Cow position:
               
chr21:742537-742266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
8.99999e-40
               

               
Alignm gaps (pig, cow):
               
232, 9
               

               
Conread position:
               
241-524
               

               
Cow position:
               
chr21:8430832-8431124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
9, 182
               

               
Conread position:
               
241-539
               

               
Cow position:
               
chr21:45835126-45835439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
129, 92
               

               
Conread position:
               
241-558
               

               
Cow position:
               
chr21:12354438-12354748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
31, 143
               

               
Conread position:
               
241-574
               

               
Cow position:
               
chr21:44214375-44214048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
177, 78
               

               
Conread position:
               
241-590
               

               
Cow position:
               
chr21:30835631-30835270 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 182
               

               
Conread position:
               
241-600
               

               
Cow position:
               
chr21:30236578-30236919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
116, 43
               

               
Conread position:
               
241-648
               

               
Cow position:
               
chr21:10004619-10005032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 158
               

               
Conread position:
               
241-673
               

               
Cow position:
               
chr21:4281619-4282039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
174, 78
               

               
Conread position:
               
241-673
               

               
Cow position:
               
chr21:46848869-46849294 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
175, 44
               

               
Conread position:
               
241-674
               

               
Cow position:
               
chr21:39403264-39403711 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
177, 84
               

               
Conread position:
               
241-676
               

               
Cow position:
               
chr21:36763326-36762879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 195
               

               
Conread position:
               
242-396
               

               
Cow position:
               
chr21:17857028-17856874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
85, 113
               

               
Conread position:
               
242-421
               

               
Cow position:
               
chr21:4109040-4108858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
86, 62
               

               
Conread position:
               
242-441
               

               
Cow position:
               
chr21:30658124-30657932 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
173, 68
               

               
Conread position:
               
242-449
               

               
Cow position:
               
chr21:15012694-15012493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
172, 31
               

               
Conread position:
               
242-474
               

               
Cow position:
               
chr21:40475765-40475529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
5, 186
               

               
Conread position:
               
242-485
               

               
Cow position:
               
chr21:36682589-36682341 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
51, 94
               

               
Conread position:
               
242-528
               

               
Cow position:
               
chr21:13842755-13842463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
52, 7
               

               
Conread position:
               
242-552
               

               
Cow position:
               
chr21:16152703-16152385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
184, 86
               

               
Conread position:
               
242-552
               

               
Cow position:
               
chr21:47713745-47714057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 7
               

               
Conread position:
               
242-600
               

               
Cow position:
               
chr21:938284-937932 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 106
               

               
Conread position:
               
242-657
               

               
Cow position:
               
chr21:34654333-34653927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
172, 78
               

               
Conread position:
               
242-667
               

               
Cow position:
               
chr21:28244731-28244311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
5, 78
               

               
Conread position:
               
242-671
               

               
Cow position:
               
chr21:32339482-32339906 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
176, 43
               

               
Conread position:
               
242-673
               

               
Cow position:
               
chr21:802060-802465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 45
               

               
Conread position:
               
242-673
               

               
Cow position:
               
chr21:23587135-23586705 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 65
               

               
Conread position:
               
242-673
               

               
Cow position:
               
chr21:27229540-27229966 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
163, 68
               

               
Conread position:
               
242-673
               

               
Cow position:
               
chr21:49699773-49700207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
5, 97
               

               
Conread position:
               
243-412
               

               
Cow position:
               
chr21:8506285-8506453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
91, 0
               

               
Conread position:
               
243-412
               

               
Cow position:
               
chr21:8509173-8509341 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
91, 0
               

               
Conread position:
               
243-434
               

               
Cow position:
               
chr21:6292011-6291817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
243-444
               

               
Cow position:
               
chr21:48482268-48482469 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
64, 83
               

               
Conread position:
               
243-469
               

               
Cow position:
               
chr21:11678060-11678269 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
210, 43
               

               
Conread position:
               
243-528
               

               
Cow position:
               
chr21:14126534-14126263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
244-535
               

               
Cow position:
               
chr21:868658-868958 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 196
               

               
Conread position:
               
245-414
               

               
Cow position:
               
chr21:16119902-16120069 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
84, 31
               

               
Conread position:
               
245-417
               

               
Cow position:
               
chr21:7208514-7208681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
13, 75
               

               
Conread position:
               
245-417
               

               
Cow position:
               
chr21:30970195-30970023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
83, 39
               

               
Conread position:
               
245-422
               

               
Cow position:
               
chr21:36121489-36121309 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
81, 38
               

               
Conread position:
               
245-435
               

               
Cow position:
               
chr21:37495684-37495875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
143, 183
               

               
Conread position:
               
245-504
               

               
Cow position:
               
chr21:46599618-46599357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
173, 83
               

               
Conread position:
               
245-543
               

               
Cow position:
               
chr21:31159646-31159361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
81, 39
               

               
Conread position:
               
245-552
               

               
Cow position:
               
chr21:5465007-5464693 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
179, 82
               

               
Conread position:
               
245-563
               

               
Cow position:
               
chr21:15543979-15544283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
221, 31
               

               
Conread position:
               
245-587
               

               
Cow position:
               
chr21:22209983-22210333 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 94
               

               
Conread position:
               
245-672
               

               
Cow position:
               
chr21:3236763-3236360 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
220, 69
               

               
Conread position:
               
245-672
               

               
Cow position:
               
chr21:36795884-36795433 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
462
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 211
               

               
Conread position:
               
245-673
               

               
Cow position:
               
chr21:24598903-24598490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
172, 32
               

               
Conread position:
               
245-673
               

               
Cow position:
               
chr21:30848688-30849110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
170, 74
               

               
Conread position:
               
245-673
               

               
Cow position:
               
chr21:41974107-41974550 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 179
               

               
Conread position:
               
246-412
               

               
Cow position:
               
chr21:7460864-7460700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
246-451
               

               
Cow position:
               
chr21:24875611-24875404 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
165, 79
               

               
Conread position:
               
246-467
               

               
Cow position:
               
chr21:11353323-11353098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
17, 92
               

               
Conread position:
               
246-492
               

               
Cow position:
               
chr21:39319151-39319404 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
72, 27
               

               
Conread position:
               
246-570
               

               
Cow position:
               
chr21:8349581-8349256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
154, 27
               

               
Conread position:
               
246-647
               

               
Cow position:
               
chr21:18318972-18318581 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
73, 115
               

               
Conread position:
               
246-671
               

               
Cow position:
               
chr21:7710420-7709996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
52, 92
               

               
Conread position:
               
246-673
               

               
Cow position:
               
chr21:17184177-17183751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
82, 60
               

               
Conread position:
               
246-673
               

               
Cow position:
               
chr21:23673004-23672572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 38
               

               
Conread position:
               
249-424
               

               
Cow position:
               
chr21:14516196-14516027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
156, 58
               

               
Conread position:
               
249-506
               

               
Cow position:
               
chr21:7169943-7169682 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
165, 84
               

               
Conread position:
               
249-594
               

               
Cow position:
               
chr21:22121758-22121426 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
278, 68
               

               
Conread position:
               
249-669
               

               
Cow position:
               
chr21:44565473-44565867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
249-673
               

               
Cow position:
               
chr21:11644710-11645140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
169, 186
               

               
Conread position:
               
249-673
               

               
Cow position:
               
chr21:24858572-24858140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 86
               

               
Conread position:
               
249-673
               

               
Cow position:
               
chr21:47464863-47465292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
169, 131
               

               
Conread position:
               
249-674
               

               
Cow position:
               
chr21:20160934-20160511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 27
               

               
Conread position:
               
250-411
               

               
Cow position:
               
chr21:21159058-21158905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
250-579
               

               
Cow position:
               
chr21:37014170-37014484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
166, 76
               

               
Conread position:
               
251-505
               

               
Cow position:
               
chr21:19240624-19240880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
168, 40
               

               
Conread position:
               
251-603
               

               
Cow position:
               
chr21:48637501-48637866 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
75, 109
               

               
Conread position:
               
251-672
               

               
Cow position:
               
chr21:7673367-7672962 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
215, 68
               

               
Conread position:
               
251-672
               

               
Cow position:
               
chr21:9311309-9310875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
75, 103
               

               
Conread position:
               
251-675
               

               
Cow position:
               
chr21:7564064-7564495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
162, 22
               

               
Conread position:
               
252-397
               

               
Cow position:
               
chr21:40916734-40916591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
252-672
               

               
Cow position:
               
chr21:11739866-11740301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 34
               

               
Conread position:
               
252-673
               

               
Cow position:
               
chr21:17193495-17193931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 33
               

               
Conread position:
               
253-417
               

               
Cow position:
               
chr21:27568146-27567982 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
66, 36
               

               
Conread position:
               
253-670
               

               
Cow position:
               
chr21:12087829-12087422 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
54, 63
               

               
Conread position:
               
253-672
               

               
Cow position:
               
chr21:41580007-41579579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 44
               

               
Conread position:
               
253-673
               

               
Cow position:
               
chr21:27863267-27863691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
162, 67
               

               
Conread position:
               
254-398
               

               
Cow position:
               
chr21:31258720-31258573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
56, 78
               

               
Conread position:
               
254-442
               

               
Cow position:
               
chr21:42017350-42017540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
59, 31
               

               
Conread position:
               
254-475
               

               
Cow position:
               
chr21:24266310-24266537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
66, 197
               

               
Conread position:
               
254-528
               

               
Cow position:
               
chr21:6317434-6317705 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
47, 78
               

               
Conread position:
               
254-580
               

               
Cow position:
               
chr21:41107525-41107844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
48, 74
               

               
Conread position:
               
254-587
               

               
Cow position:
               
chr21:28237448-28237803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
72, 148
               

               
Conread position:
               
254-630
               

               
Cow position:
               
chr21:34151827-34151452 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
47, 22
               

               
Conread position:
               
254-666
               

               
Cow position:
               
chr21:10114082-10114493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 77
               

               
Conread position:
               
254-673
               

               
Cow position:
               
chr21:8351043-8351475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
154, 79
               

               
Conread position:
               
255-422
               

               
Cow position:
               
chr21:5214602-5214430 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
255-577
               

               
Cow position:
               
chr21:10410473-10410139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
71, 30
               

               
Conread position:
               
257-385
               

               
Cow position:
               
chr21:37110914-37110791 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
129
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
257-600
               

               
Cow position:
               
chr21:10561337-10561686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
158, 76
               

               
Conread position:
               
257-645
               

               
Cow position:
               
chr21:7824942-7825319 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
102, 76
               

               
Conread position:
               
257-673
               

               
Cow position:
               
chr21:28810027-28810434 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
160, 52
               

               
Conread position:
               
257-674
               

               
Cow position:
               
chr21:22861240-22860829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
160, 50
               

               
Conread position:
               
258-552
               

               
Cow position:
               
chr21:976891-977198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
13, 171
               

               
Conread position:
               
258-673
               

               
Cow position:
               
chr21:14760804-14760409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
157, 27
               

               
Conread position:
               
258-674
               

               
Cow position:
               
chr21:47763868-47764285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 29
               

               
Conread position:
               
259-403
               

               
Cow position:
               
chr21:7424767-7424912 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
54, 71
               

               
Conread position:
               
259-673
               

               
Cow position:
               
chr21:3360770-3361186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
135, 68
               

               
Conread position:
               
261-660
               

               
Cow position:
               
chr21:13840572-13840164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
72, 99
               

               
Conread position:
               
261-673
               

               
Cow position:
               
chr21:31253777-31253365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 66
               

               
Conread position:
               
262-519
               

               
Cow position:
               
chr21:828967-829227 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
152, 86
               

               
Conread position:
               
262-673
               

               
Cow position:
               
chr21:19195918-19196338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 92
               

               
Conread position:
               
262-675
               

               
Cow position:
               
chr21:46912792-46912371 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
26, 102
               

               
Conread position:
               
266-528
               

               
Cow position:
               
chr21:7377684-7377952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
62, 172
               

               
Conread position:
               
267-674
               

               
Cow position:
               
chr21:6624397-6623970 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
8.99999e-40
               

               
Alignm gaps (pig, cow):
               
59, 229
               

               
Conread position:
               
275-669
               

               
Cow position:
               
chr21:12801514-12801914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 165
               

               
Conread position:
               
275-673
               

               
Cow position:
               
chr21:28626466-28626070 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
193, 52
               

               
Conread position:
               
279-452
               

               
Cow position:
               
chr21:30243459-30243630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
135, 58
               

               
Conread position:
               
279-668
               

               
Cow position:
               
chr21:17642763-17643140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
140, 46
               

               
Conread position:
               
279-673
               

               
Cow position:
               
chr21:19259042-19258655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
266, 48
               

               
Conread position:
               
281-640
               

               
Cow position:
               
chr21:28924330-28923978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
137, 24
               

               
Conread position:
               
281-673
               

               
Cow position:
               
chr21:37344877-37345273 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 35
               

               
Conread position:
               
284-676
               

               
Cow position:
               
chr21:10515022-10514634 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
23, 38
               

               
Conread position:
               
287-697
               

               
Cow position:
               
chr21:10633421-10633834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 71
               

               
Conread position:
               
292-595
               

               
Cow position:
               
chr21:42022481-42022193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
120, 11
               

               
Conread position:
               
292-673
               

               
Cow position:
               
chr21:9990724-9990343 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 139
               

               
Conread position:
               
293-673
               

               
Cow position:
               
chr21:28429657-28429278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
46, 130
               

               
Conread position:
               
294-619
               

               
Cow position:
               
chr21:25628699-25629029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
22, 75
               

               
Conread position:
               
297-422
               

               
Cow position:
               
chr21:40305151-40305027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
122, 0
               

               
Conread position:
               
297-453
               

               
Cow position:
               
chr21:14228073-14228230 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
121, 36
               

               
Conread position:
               
298-506
               

               
Cow position:
               
chr21:46132782-46132571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
13, 141
               

               
Conread position:
               
301-557
               

               
Cow position:
               
chr21:297945-297694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
116, 33
               

               
Conread position:
               
303-667
               

               
Cow position:
               
chr21:13727563-13727925 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
156, 33
               

               
Conread position:
               
306-473
               

               
Cow position:
               
chr21:46451757-46451922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
131, 11
               

               
Conread position:
               
307-658
               

               
Cow position:
               
chr21:45920864-45921215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
108, 10
               

               
Conread position:
               
308-419
               

               
Cow position:
               
chr21:42465987-42465874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
114
               

               
Alignm identity:
               
92
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
308-645
               

               
Cow position:
               
chr21:42007264-42007603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 127
               

               
Conread position:
               
308-656
               

               
Cow position:
               
chr21:24642708-24642364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
116, 25
               

               
Conread position:
               
308-673
               

               
Cow position:
               
chr21:18790370-18790727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
100, 19
               

               
Conread position:
               
308-674
               

               
Cow position:
               
chr21:42413898-42414275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 133
               

               
Conread position:
               
310-464
               

               
Cow position:
               
chr21:13164053-13163898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
109, 27
               

               
Conread position:
               
310-470
               

               
Cow position:
               
chr21:5341899-5342061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
8, 25
               

               
Conread position:
               
310-492
               

               
Cow position:
               
chr21:19359982-19360167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
104, 23
               

               
Conread position:
               
310-528
               

               
Cow position:
               
chr21:10538061-10538275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
105, 24
               

               
Conread position:
               
310-539
               

               
Cow position:
               
chr21:43259413-43259186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
108, 55
               

               
Conread position:
               
310-666
               

               
Cow position:
               
chr21:46264364-46264012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
104, 24
               

               
Conread position:
               
310-671
               

               
Cow position:
               
chr21:13127903-13128263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 48
               

               
Conread position:
               
310-673
               

               
Cow position:
               
chr21:13365538-13365173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 125
               

               
Conread position:
               
310-690
               

               
Cow position:
               
chr21:30250010-30250397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
290, 34
               

               
Conread position:
               
311-553
               

               
Cow position:
               
chr21:29014365-29014610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
106, 120
               

               
Conread position:
               
311-659
               

               
Cow position:
               
chr21:18800341-18800686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
107, 22
               

               
Conread position:
               
311-663
               

               
Cow position:
               
chr21:27624892-27624551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 17
               

               
Conread position:
               
311-667
               

               
Cow position:
               
chr21:3818401-3818051 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
113, 22
               

               
Conread position:
               
311-671
               

               
Cow position:
               
chr21:713136-712764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
22, 30
               

               
Conread position:
               
311-673
               

               
Cow position:
               
chr21:33264037-33263678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
103, 25
               

               
Conread position:
               
311-674
               

               
Cow position:
               
chr21:5392344-5392715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
103, 22
               

               
Conread position:
               
311-675
               

               
Cow position:
               
chr21:33912-33548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
108, 22
               

               
Conread position:
               
312-652
               

               
Cow position:
               
chr21:10823751-10823403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
215, 15
               

               
Conread position:
               
312-672
               

               
Cow position:
               
chr21:27341405-27341767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
166, 9
               

               
Conread position:
               
312-674
               

               
Cow position:
               
chr21:36297686-36297306 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
102, 119
               

               
Conread position:
               
313-605
               

               
Cow position:
               
chr21:2658002-2657712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
18, 39
               

               
Conread position:
               
314-565
               

               
Cow position:
               
chr21:2809975-2810229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
82, 19
               

               
Conread position:
               
314-673
               

               
Cow position:
               
chr21:26647826-26648177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
166, 19
               

               
Conread position:
               
314-673
               

               
Cow position:
               
chr21:32237470-32237126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
213, 121
               

               
Conread position:
               
314-673
               

               
Cow position:
               
chr21:45473567-45473928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
110, 105
               

               
Conread position:
               
314-674
               

               
Cow position:
               
chr21:29485168-29484811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
161, 19
               

               
Conread position:
               
315-640
               

               
Cow position:
               
chr21:11360215-11359899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
109, 18
               

               
Conread position:
               
315-673
               

               
Cow position:
               
chr21:33210379-33210027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 124
               

               
Conread position:
               
315-675
               

               
Cow position:
               
chr21:41598000-41597642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
102, 18
               

               
Conread position:
               
316-463
               

               
Cow position:
               
chr21:7584038-7583890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
100, 17
               

               
Conread position:
               
317-473
               

               
Cow position:
               
chr21:11057694-11057848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
88, 16
               

               
Conread position:
               
317-673
               

               
Cow position:
               
chr21:33563190-33562844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
210, 16
               

               
Conread position:
               
318-663
               

               
Cow position:
               
chr21:25383212-25382848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
113, 15
               

               
Conread position:
               
318-673
               

               
Cow position:
               
chr21:5153806-5153446 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
111, 15
               

               
Conread position:
               
318-674
               

               
Cow position:
               
chr21:30990103-30990441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
166, 17
               

               
Conread position:
               
318-686
               

               
Cow position:
               
chr21:44671931-44671568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 73
               

               
Conread position:
               
319-668
               

               
Cow position:
               
chr21:15611325-15610985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
213, 34
               

               
Conread position:
               
319-675
               

               
Cow position:
               
chr21:21077495-21077157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
164, 82
               

               
Conread position:
               
319-687
               

               
Cow position:
               
chr21:8125620-8125985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
99, 17
               

               
Conread position:
               
320-670
               

               
Cow position:
               
chr21:10001259-10000912 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
97, 13
               

               
Conread position:
               
320-673
               

               
Cow position:
               
chr21:1059260-1058905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
159, 93
               

               
Conread position:
               
320-673
               

               
Cow position:
               
chr21:42384693-42384334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 164
               

               
Conread position:
               
321-673
               

               
Cow position:
               
chr21:31691667-31691307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 96
               

               
Conread position:
               
322-672
               

               
Cow position:
               
chr21:396049-395705 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
113, 11
               

               
Conread position:
               
323-601
               

               
Cow position:
               
chr21:3400651-3400937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
95, 10
               

               
Conread position:
               
323-667
               

               
Cow position:
               
chr21:7581724-7582075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
96, 10
               

               
Conread position:
               
323-685
               

               
Cow position:
               
chr21:28191213-28190844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
94, 10
               

               
Conread position:
               
324-596
               

               
Cow position:
               
chr21:45262629-45262910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
94, 111
               

               
Conread position:
               
324-605
               

               
Cow position:
               
chr21:21077780-21077494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
145, 33
               

               
Conread position:
               
325-535
               

               
Cow position:
               
chr21:734768-734563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
100, 9
               

               
Conread position:
               
327-588
               

               
Cow position:
               
chr21:40769471-40769219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
89, 98
               

               
Conread position:
               
327-634
               

               
Cow position:
               
chr21:46551924-46552233 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
33, 112
               

               
Conread position:
               
329-539
               

               
Cow position:
               
chr21:471850-471640 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
90, 35
               

               
Conread position:
               
331-553
               

               
Cow position:
               
chr21:40192131-40192351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
85, 13
               

               
Conread position:
               
331-674
               

               
Cow position:
               
chr21:8235388-8235717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
192, 76
               

               
Conread position:
               
334-671
               

               
Cow position:
               
chr21:45915547-45915873 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
101, 79
               

               
Conread position:
               
337-671
               

               
Cow position:
               
chr21:38121269-38120938 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 87
               

               
Conread position:
               
337-673
               

               
Cow position:
               
chr21:15911568-15911229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 79
               

               
Conread position:
               
337-673
               

               
Cow position:
               
chr21:30606918-30607259 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 83
               

               
Conread position:
               
337-673
               

               
Cow position:
               
chr21:33791214-33791539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
190, 19
               

               
Conread position:
               
337-673
               

               
Cow position:
               
chr21:44515440-44515103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
30, 109
               

               
Conread position:
               
337-675
               

               
Cow position:
               
chr21:724711-725065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 79
               

               
Conread position:
               
337-712
               

               
Cow position:
               
chr21:8549847-8549467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
81, 19
               

               
Conread position:
               
338-673
               

               
Cow position:
               
chr21:5567153-5566818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
78, 69
               

               
Conread position:
               
339-517
               

               
Cow position:
               
chr21:13036740-13036915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
340-651
               

               
Cow position:
               
chr21:48176985-48176677 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
206, 66
               

               
Conread position:
               
343-670
               

               
Cow position:
               
chr21:4998333-4998655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
76, 110
               

               
Conread position:
               
344-522
               

               
Cow position:
               
chr21:20183232-20183049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
70, 91
               

               
Conread position:
               
344-633
               

               
Cow position:
               
chr21:20418521-20418821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 79
               

               
Conread position:
               
344-673
               

               
Cow position:
               
chr21:45330446-45330779 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
195, 69
               

               
Conread position:
               
345-588
               

               
Cow position:
               
chr21:35900001-35899759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
42, 46
               

               
Conread position:
               
347-673
               

               
Cow position:
               
chr21:41878627-41878305 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
72, 32
               

               
Conread position:
               
348-673
               

               
Cow position:
               
chr21:17709978-17709655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
131, 65
               

               
Conread position:
               
349-672
               

               
Cow position:
               
chr21:19363304-19363634 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 15
               

               
Conread position:
               
353-673
               

               
Cow position:
               
chr21:42540070-42540391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 149
               

               
Conread position:
               
354-663
               

               
Cow position:
               
chr21:39401741-39401433 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 33
               

               
Conread position:
               
354-671
               

               
Cow position:
               
chr21:1591705-1591379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 85
               

               
Conread position:
               
355-672
               

               
Cow position:
               
chr21:16187657-16187970 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
58, 83
               

               
Conread position:
               
357-671
               

               
Cow position:
               
chr21:43357108-43357430 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 80
               

               
Conread position:
               
358-640
               

               
Cow position:
               
chr21:11251016-11250727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
158, 55
               

               
Conread position:
               
359-673
               

               
Cow position:
               
chr21:46144105-46143772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 79
               

               
Conread position:
               
361-616
               

               
Cow position:
               
chr21:36789939-36789679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 166
               

               
Conread position:
               
364-671
               

               
Cow position:
               
chr21:23499688-23499993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
111, 13
               

               
Conread position:
               
370-673
               

               
Cow position:
               
chr21:28512649-28512361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 49
               

               
Conread position:
               
371-672
               

               
Cow position:
               
chr21:10601241-10601539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
47, 67
               

               
Conread position:
               
373-673
               

               
Cow position:
               
chr21:5636588-5636892 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
8.99999e-40
               

               
Alignm gaps (pig, cow):
               
46, 108
               

               
Conread position:
               
379-574
               

               
Cow position:
               
chr21:33359917-33360110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
148, 10
               

               
Conread position:
               
379-630
               

               
Cow position:
               
chr21:17856670-17856415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
39, 46
               

               
Conread position:
               
400-652
               

               
Cow position:
               
chr21:11456704-11456960 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
31, 24
               

               
Conread position:
               
401-673
               

               
Cow position:
               
chr21:28882239-28881971 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
29, 37
               

               
Conread position:
               
402-674
               

               
Cow position:
               
chr21:24765386-24765111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
23, 71
               

               
Conread position:
               
404-673
               

               
Cow position:
               
chr21:30150166-30150437 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
63, 11
               

               
Conread position:
               
405-641
               

               
Cow position:
               
chr21:2294081-2293853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
7, 31
               

               
Conread position:
               
408-692
               

               
Cow position:
               
chr21:6102164-6102457 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
11, 30
               

               
Conread position:
               
409-670
               

               
Cow position:
               
chr21:12960806-12961071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
91, 15
               

               
Conread position:
               
417-600
               

               
Cow position:
               
chr21:29224775-29224964 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
110, 18
               

               
Conread position:
               
417-665
               

               
Cow position:
               
chr21:44109088-44108844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
65, 19
               

               
Conread position:
               
417-670
               

               
Cow position:
               
chr21:13898273-13898020 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
63, 19
               

               
Conread position:
               
417-674
               

               
Cow position:
               
chr21:5454906-5455157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
110, 19
               

               
Conread position:
               
418-675
               

               
Cow position:
               
chr21:8985636-8985376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
50, 17
               

               
Conread position:
               
419-605
               

               
Cow position:
               
chr21:18041764-18041955 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
65, 16
               

               
Conread position:
               
422-673
               

               
Cow position:
               
chr21:42913663-42913917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 5
               

               
Conread position:
               
423-637
               

               
Cow position:
               
chr21:14515927-14515710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
107, 54
               

               
Conread position:
               
428-605
               

               
Cow position:
               
chr21:9979895-9980071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
41, 53
               

               
Conread position:
               
429-674
               

               
Cow position:
               
chr21:17410583-17410831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
6, 15
               

               
Conread position:
               
434-597
               

               
Cow position:
               
chr21:4568354-4568186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
47, 88
               

               
Conread position:
               
434-664
               

               
Cow position:
               
chr21:36793964-36793730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
49, 90
               

               
Conread position:
               
434-670
               

               
Cow position:
               
chr21:21480115-21480351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
35, 47
               

               
Conread position:
               
434-673
               

               
Cow position:
               
chr21:911897-912138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
50, 36
               

               
Conread position:
               
436-604
               

               
Cow position:
               
chr21:39809961-39809793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
49, 85
               

               
Conread position:
               
436-673
               

               
Cow position:
               
chr21:23984215-23984455 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
91, 61
               

               
Conread position:
               
436-673
               

               
Cow position:
               
chr21:27743816-27743571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
44, 155
               

               
Conread position:
               
439-674
               

               
Cow position:
               
chr21:18495036-18494793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
8.99999e-40
               

               
Alignm gaps (pig, cow):
               
9, 31
               

               
Conread position:
               
439-675
               

               
Cow position:
               
chr21:34053129-34053360 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
89, 81
               

               
Conread position:
               
440-675
               

               
Cow position:
               
chr21:31676562-31676325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
54, 80
               

               
Conread position:
               
441-673
               

               
Cow position:
               
chr21:9710644-9710874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
26, 62
               

               
Conread position:
               
463-671
               

               
Cow position:
               
chr21:48484411-48484613 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
64, 18
               

               
Conread position:
               
469-667
               

               
Cow position:
               
chr21:5344692-5344490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
16, 100
               

               
Conread position:
               
475-675
               

               
Cow position:
               
chr21:8618306-8618101 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
9, 46
               

               
Conread position:
               
478-675
               

               
Cow position:
               
chr21:9278406-9278199 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
7, 0
               
Show alignments to all cow chromosomes.