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Cow genome map

           
Conread name:
           
LyN1-MLN01F010092
        

               
Conread position:
               
161-673
               

               
Cow position:
               
chr9:5835899-5836426 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
540
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
158, 108
               

               
Conread position:
               
162-552
               

               
Cow position:
               
chr9:1867192-1867591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
90, 24
               

               
Conread position:
               
162-674
               

               
Cow position:
               
chr9:20942866-20942346 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
533
               

               
Alignm identity:
               
339
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
164, 21
               

               
Conread position:
               
205-552
               

               
Cow position:
               
chr9:34283745-34284094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
51, 27
               

               
Conread position:
               
206-673
               

               
Cow position:
               
chr9:42497621-42498093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
486
               

               
Alignm identity:
               
353
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 122
               

               
Conread position:
               
225-673
               

               
Cow position:
               
chr9:26085869-26086331 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
469
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 106
               

               
Conread position:
               
227-422
               

               
Cow position:
               
chr9:40984319-40984516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
98, 0
               

               
Conread position:
               
230-675
               

               
Cow position:
               
chr9:8997375-8997822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
98, 232
               

               
Conread position:
               
233-419
               

               
Cow position:
               
chr9:33101286-33101108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
11, 79
               

               
Conread position:
               
233-567
               

               
Cow position:
               
chr9:36843608-36843949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
76, 16
               

               
Conread position:
               
233-613
               

               
Cow position:
               
chr9:53139311-53138923 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
93, 11
               

               
Conread position:
               
234-386
               

               
Cow position:
               
chr9:53120828-53120967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
234-387
               

               
Cow position:
               
chr9:16826379-16826220 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
61, 19
               

               
Conread position:
               
234-410
               

               
Cow position:
               
chr9:8535680-8535865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
234-417
               

               
Cow position:
               
chr9:34276390-34276205 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
92, 18
               

               
Conread position:
               
234-417
               

               
Cow position:
               
chr9:54598496-54598678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
94, 18
               

               
Conread position:
               
234-422
               

               
Cow position:
               
chr9:40603490-40603679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
92, 20
               

               
Conread position:
               
234-422
               

               
Cow position:
               
chr9:61286584-61286773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
94, 18
               

               
Conread position:
               
234-429
               

               
Cow position:
               
chr9:19718511-19718320 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
180, 15
               

               
Conread position:
               
234-430
               

               
Cow position:
               
chr9:12773515-12773711 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
9, 95
               

               
Conread position:
               
234-433
               

               
Cow position:
               
chr9:5187038-5186843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
234-452
               

               
Cow position:
               
chr9:11098629-11098414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
66, 52
               

               
Conread position:
               
234-467
               

               
Cow position:
               
chr9:44759104-44758875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
181, 18
               

               
Conread position:
               
234-467
               

               
Cow position:
               
chr9:58662064-58662296 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
14, 161
               

               
Conread position:
               
234-469
               

               
Cow position:
               
chr9:39709676-39709916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
90, 18
               

               
Conread position:
               
234-474
               

               
Cow position:
               
chr9:2037256-2037494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
13, 181
               

               
Conread position:
               
234-482
               

               
Cow position:
               
chr9:47517020-47517268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
92, 18
               

               
Conread position:
               
234-490
               

               
Cow position:
               
chr9:41785042-41785292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
9, 54
               

               
Conread position:
               
234-528
               

               
Cow position:
               
chr9:45728599-45728896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
44, 125
               

               
Conread position:
               
234-539
               

               
Cow position:
               
chr9:44396482-44396789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
92, 18
               

               
Conread position:
               
234-577
               

               
Cow position:
               
chr9:60395227-60394879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
95, 202
               

               
Conread position:
               
234-650
               

               
Cow position:
               
chr9:43757367-43757764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
184, 15
               

               
Conread position:
               
234-667
               

               
Cow position:
               
chr9:55117904-55118336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
86, 190
               

               
Conread position:
               
234-672
               

               
Cow position:
               
chr9:34902276-34901852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 74
               

               
Conread position:
               
234-672
               

               
Cow position:
               
chr9:45285716-45285268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 16
               

               
Conread position:
               
234-672
               

               
Cow position:
               
chr9:56032493-56032065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 12
               

               
Conread position:
               
234-672
               

               
Cow position:
               
chr9:58452250-58451834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 85
               

               
Conread position:
               
234-673
               

               
Cow position:
               
chr9:7409600-7410046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
468
               

               
Alignm identity:
               
341
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
180, 18
               

               
Conread position:
               
234-673
               

               
Cow position:
               
chr9:8936970-8937412 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
94, 121
               

               
Conread position:
               
234-673
               

               
Cow position:
               
chr9:50607109-50606689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 87
               

               
Conread position:
               
234-673
               

               
Cow position:
               
chr9:55256727-55256285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
180, 86
               

               
Conread position:
               
234-674
               

               
Cow position:
               
chr9:5227339-5226899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 77
               

               
Conread position:
               
235-421
               

               
Cow position:
               
chr9:28315248-28315439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
83, 17
               

               
Conread position:
               
235-461
               

               
Cow position:
               
chr9:34484414-34484646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
72, 18
               

               
Conread position:
               
235-473
               

               
Cow position:
               
chr9:12337723-12337965 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
235-476
               

               
Cow position:
               
chr9:12786653-12786407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
91, 192
               

               
Conread position:
               
235-518
               

               
Cow position:
               
chr9:52755028-52754748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
79, 17
               

               
Conread position:
               
235-553
               

               
Cow position:
               
chr9:52267938-52267614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
35, 14
               

               
Conread position:
               
235-652
               

               
Cow position:
               
chr9:389176-388772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
15, 34
               

               
Conread position:
               
235-652
               

               
Cow position:
               
chr9:1729863-1729433 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
53, 14
               

               
Conread position:
               
235-673
               

               
Cow position:
               
chr9:28726908-28726462 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
354
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 95
               

               
Conread position:
               
235-675
               

               
Cow position:
               
chr9:56453168-56453599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
8, 75
               

               
Conread position:
               
235-684
               

               
Cow position:
               
chr9:26057605-26057173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
86, 18
               

               
Conread position:
               
236-373
               

               
Cow position:
               
chr9:34399493-34399632 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
236-417
               

               
Cow position:
               
chr9:35466704-35466517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
236-417
               

               
Cow position:
               
chr9:36624105-36623920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
236-418
               

               
Cow position:
               
chr9:44625044-44625218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
236-422
               

               
Cow position:
               
chr9:31344785-31344596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
90, 17
               

               
Conread position:
               
236-423
               

               
Cow position:
               
chr9:31694212-31694022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
79, 13
               

               
Conread position:
               
236-482
               

               
Cow position:
               
chr9:8629087-8628845 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
174, 13
               

               
Conread position:
               
236-521
               

               
Cow position:
               
chr9:23956155-23955872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 97
               

               
Conread position:
               
236-535
               

               
Cow position:
               
chr9:5900129-5899836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
179, 16
               

               
Conread position:
               
236-539
               

               
Cow position:
               
chr9:13744109-13743803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
82, 17
               

               
Conread position:
               
236-596
               

               
Cow position:
               
chr9:19555213-19555565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
176, 56
               

               
Conread position:
               
236-617
               

               
Cow position:
               
chr9:61302826-61303215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 79
               

               
Conread position:
               
236-673
               

               
Cow position:
               
chr9:38792839-38793283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
137, 247
               

               
Conread position:
               
236-674
               

               
Cow position:
               
chr9:51566673-51566222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 16
               

               
Conread position:
               
236-675
               

               
Cow position:
               
chr9:36410526-36410086 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
95, 117
               

               
Conread position:
               
237-393
               

               
Cow position:
               
chr9:50647894-50648048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
44, 71
               

               
Conread position:
               
237-458
               

               
Cow position:
               
chr9:27345763-27345536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
78, 12
               

               
Conread position:
               
237-458
               

               
Cow position:
               
chr9:35832789-35832571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
181, 36
               

               
Conread position:
               
237-464
               

               
Cow position:
               
chr9:28156526-28156747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
187, 17
               

               
Conread position:
               
237-505
               

               
Cow position:
               
chr9:6954426-6954151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
91, 9
               

               
Conread position:
               
237-520
               

               
Cow position:
               
chr9:50310938-50310663 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
88, 155
               

               
Conread position:
               
237-539
               

               
Cow position:
               
chr9:40005303-40005605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 12
               

               
Conread position:
               
237-576
               

               
Cow position:
               
chr9:39011643-39011306 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
6, 37
               

               
Conread position:
               
237-605
               

               
Cow position:
               
chr9:8919831-8920198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
104, 9
               

               
Conread position:
               
237-607
               

               
Cow position:
               
chr9:12910574-12910197 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 18
               

               
Conread position:
               
237-641
               

               
Cow position:
               
chr9:35028342-35027942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
88, 185
               

               
Conread position:
               
237-672
               

               
Cow position:
               
chr9:19902916-19903315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 49
               

               
Conread position:
               
237-672
               

               
Cow position:
               
chr9:20406480-20406901 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
293, 134
               

               
Conread position:
               
237-673
               

               
Cow position:
               
chr9:20090885-20091302 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
181, 36
               

               
Conread position:
               
237-673
               

               
Cow position:
               
chr9:54677082-54677486 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
83, 188
               

               
Conread position:
               
238-412
               

               
Cow position:
               
chr9:61301153-61300977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
238-417
               

               
Cow position:
               
chr9:61019538-61019357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
90, 14
               

               
Conread position:
               
238-424
               

               
Cow position:
               
chr9:11447981-11447796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
88, 103
               

               
Conread position:
               
238-448
               

               
Cow position:
               
chr9:8613386-8613173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
90, 14
               

               
Conread position:
               
238-465
               

               
Cow position:
               
chr9:14738079-14738304 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
178, 15
               

               
Conread position:
               
238-467
               

               
Cow position:
               
chr9:64629537-64629308 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
14, 36
               

               
Conread position:
               
238-468
               

               
Cow position:
               
chr9:34344436-34344669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
87, 14
               

               
Conread position:
               
238-477
               

               
Cow position:
               
chr9:47214722-47214478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
55, 11
               

               
Conread position:
               
238-483
               

               
Cow position:
               
chr9:23971067-23970823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
159, 69
               

               
Conread position:
               
238-521
               

               
Cow position:
               
chr9:52510942-52511226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
88, 14
               

               
Conread position:
               
238-528
               

               
Cow position:
               
chr9:53109077-53109370 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
195, 286
               

               
Conread position:
               
238-539
               

               
Cow position:
               
chr9:34410566-34410266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
45, 14
               

               
Conread position:
               
238-539
               

               
Cow position:
               
chr9:37934412-37934107 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
47, 14
               

               
Conread position:
               
238-584
               

               
Cow position:
               
chr9:40215074-40215422 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
289, 15
               

               
Conread position:
               
238-605
               

               
Cow position:
               
chr9:58448299-58447923 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
86, 14
               

               
Conread position:
               
238-630
               

               
Cow position:
               
chr9:42264048-42264442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
82, 14
               

               
Conread position:
               
238-634
               

               
Cow position:
               
chr9:53762526-53762926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
175, 14
               

               
Conread position:
               
238-641
               

               
Cow position:
               
chr9:40303308-40302893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
177, 14
               

               
Conread position:
               
238-644
               

               
Cow position:
               
chr9:52130838-52131253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
81, 94
               

               
Conread position:
               
238-652
               

               
Cow position:
               
chr9:6839817-6840254 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 195
               

               
Conread position:
               
238-671
               

               
Cow position:
               
chr9:21460326-21459895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 11
               

               
Conread position:
               
238-671
               

               
Cow position:
               
chr9:61022446-61022872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 179
               

               
Conread position:
               
238-673
               

               
Cow position:
               
chr9:28772968-28773381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
238, 11
               

               
Conread position:
               
238-673
               

               
Cow position:
               
chr9:33597800-33598245 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 11
               

               
Conread position:
               
238-674
               

               
Cow position:
               
chr9:20901291-20900865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
177, 15
               

               
Conread position:
               
238-674
               

               
Cow position:
               
chr9:44709660-44710087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
292, 14
               

               
Conread position:
               
238-675
               

               
Cow position:
               
chr9:22637925-22638366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
90, 120
               

               
Conread position:
               
238-687
               

               
Cow position:
               
chr9:32676504-32676964 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
117, 11
               

               
Conread position:
               
238-689
               

               
Cow position:
               
chr9:44822496-44822022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
483
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
180, 79
               

               
Conread position:
               
239-385
               

               
Cow position:
               
chr9:388363-388219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
239-401
               

               
Cow position:
               
chr9:60741356-60741195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
65, 90
               

               
Conread position:
               
239-417
               

               
Cow position:
               
chr9:2397637-2397812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
239-417
               

               
Cow position:
               
chr9:13993590-13993770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
239-417
               

               
Cow position:
               
chr9:16115778-16115603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
239-417
               

               
Cow position:
               
chr9:35295522-35295695 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
239-417
               

               
Cow position:
               
chr9:40221357-40221181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
239-420
               

               
Cow position:
               
chr9:20828731-20828915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
89, 32
               

               
Conread position:
               
239-422
               

               
Cow position:
               
chr9:3847222-3847413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
239-422
               

               
Cow position:
               
chr9:35932987-35932803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
70, 65
               

               
Conread position:
               
239-428
               

               
Cow position:
               
chr9:63185870-63185678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
61, 46
               

               
Conread position:
               
239-452
               

               
Cow position:
               
chr9:59699725-59699505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
41, 200
               

               
Conread position:
               
239-458
               

               
Cow position:
               
chr9:41644926-41644702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
80, 98
               

               
Conread position:
               
239-467
               

               
Cow position:
               
chr9:35049307-35049530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
42, 80
               

               
Conread position:
               
239-467
               

               
Cow position:
               
chr9:52763926-52763703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
179, 34
               

               
Conread position:
               
239-468
               

               
Cow position:
               
chr9:5110683-5110916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
89, 187
               

               
Conread position:
               
239-469
               

               
Cow position:
               
chr9:56827302-56827540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
30, 11
               

               
Conread position:
               
239-472
               

               
Cow position:
               
chr9:42586721-42586495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
179, 71
               

               
Conread position:
               
239-481
               

               
Cow position:
               
chr9:8992352-8992108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
114, 94
               

               
Conread position:
               
239-499
               

               
Cow position:
               
chr9:29819553-29819805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
177, 71
               

               
Conread position:
               
239-505
               

               
Cow position:
               
chr9:16216805-16217069 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
96, 191
               

               
Conread position:
               
239-505
               

               
Cow position:
               
chr9:17840852-17840579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
92, 197
               

               
Conread position:
               
239-542
               

               
Cow position:
               
chr9:3573291-3573602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
79, 144
               

               
Conread position:
               
239-566
               

               
Cow position:
               
chr9:9311686-9312014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
180, 86
               

               
Conread position:
               
239-574
               

               
Cow position:
               
chr9:31215906-31216257 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
87, 209
               

               
Conread position:
               
239-576
               

               
Cow position:
               
chr9:26477039-26477387 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
84, 95
               

               
Conread position:
               
239-585
               

               
Cow position:
               
chr9:12280800-12281149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
174, 85
               

               
Conread position:
               
239-586
               

               
Cow position:
               
chr9:11168572-11168911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
180, 35
               

               
Conread position:
               
239-596
               

               
Cow position:
               
chr9:41728087-41728446 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
179, 143
               

               
Conread position:
               
239-603
               

               
Cow position:
               
chr9:20755932-20755577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
87, 153
               

               
Conread position:
               
239-620
               

               
Cow position:
               
chr9:52638343-52637945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
87, 113
               

               
Conread position:
               
239-630
               

               
Cow position:
               
chr9:42061920-42062337 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
239-634
               

               
Cow position:
               
chr9:30477945-30477559 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
179, 88
               

               
Conread position:
               
239-637
               

               
Cow position:
               
chr9:6338620-6339030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
94, 34
               

               
Conread position:
               
239-670
               

               
Cow position:
               
chr9:5433472-5433896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
179, 93
               

               
Conread position:
               
239-673
               

               
Cow position:
               
chr9:8998180-8998619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
179, 46
               

               
Conread position:
               
239-673
               

               
Cow position:
               
chr9:9551915-9552351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
342
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 45
               

               
Conread position:
               
239-673
               

               
Cow position:
               
chr9:18380693-18381123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 73
               

               
Conread position:
               
239-673
               

               
Cow position:
               
chr9:22318188-22318602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
185, 68
               

               
Conread position:
               
239-673
               

               
Cow position:
               
chr9:23268864-23269290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
66, 14
               

               
Conread position:
               
239-673
               

               
Cow position:
               
chr9:23541574-23541154 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
8, 153
               

               
Conread position:
               
239-673
               

               
Cow position:
               
chr9:52406997-52407434 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
185, 37
               

               
Conread position:
               
239-674
               

               
Cow position:
               
chr9:29824843-29825295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
8, 20
               

               
Conread position:
               
239-674
               

               
Cow position:
               
chr9:34697475-34697030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 178
               

               
Conread position:
               
239-674
               

               
Cow position:
               
chr9:41416157-41416616 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
468
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 305
               

               
Conread position:
               
239-675
               

               
Cow position:
               
chr9:13670463-13670903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 46
               

               
Conread position:
               
239-675
               

               
Cow position:
               
chr9:22434097-22433676 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
87, 35
               

               
Conread position:
               
239-675
               

               
Cow position:
               
chr9:58673576-58674007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
98, 70
               

               
Conread position:
               
239-679
               

               
Cow position:
               
chr9:43207551-43207108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
101, 124
               

               
Conread position:
               
240-365
               

               
Cow position:
               
chr9:52643422-52643550 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
33, 97
               

               
Conread position:
               
240-373
               

               
Cow position:
               
chr9:55577539-55577669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
240-383
               

               
Cow position:
               
chr9:3946318-3946177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
87, 0
               

               
Conread position:
               
240-401
               

               
Cow position:
               
chr9:55284513-55284355 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
240-405
               

               
Cow position:
               
chr9:9494988-9495149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
240-405
               

               
Cow position:
               
chr9:53323959-53323791 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
79, 92
               

               
Conread position:
               
240-408
               

               
Cow position:
               
chr9:6237661-6237496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
163, 9
               

               
Conread position:
               
240-412
               

               
Cow position:
               
chr9:19771188-19771362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
28, 42
               

               
Conread position:
               
240-412
               

               
Cow position:
               
chr9:32052104-32052276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
60, 51
               

               
Conread position:
               
240-417
               

               
Cow position:
               
chr9:12268862-12269035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
10, 23
               

               
Conread position:
               
240-422
               

               
Cow position:
               
chr9:36401832-36401654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
176, 80
               

               
Conread position:
               
240-422
               

               
Cow position:
               
chr9:62631839-62631660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
135, 79
               

               
Conread position:
               
240-426
               

               
Cow position:
               
chr9:34917349-34917170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
175, 82
               

               
Conread position:
               
240-430
               

               
Cow position:
               
chr9:59897424-59897610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
240-432
               

               
Cow position:
               
chr9:22447466-22447276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
89, 29
               

               
Conread position:
               
240-439
               

               
Cow position:
               
chr9:42508656-42508861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
143, 100
               

               
Conread position:
               
240-464
               

               
Cow position:
               
chr9:7806126-7805907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
179, 67
               

               
Conread position:
               
240-468
               

               
Cow position:
               
chr9:33347653-33347432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
178, 67
               

               
Conread position:
               
240-470
               

               
Cow position:
               
chr9:33151577-33151802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
174, 67
               

               
Conread position:
               
240-473
               

               
Cow position:
               
chr9:39315690-39315910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
10, 48
               

               
Conread position:
               
240-475
               

               
Cow position:
               
chr9:34024527-34024764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
174, 194
               

               
Conread position:
               
240-479
               

               
Cow position:
               
chr9:54664676-54664918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
85, 144
               

               
Conread position:
               
240-492
               

               
Cow position:
               
chr9:33838482-33838228 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
14, 86
               

               
Conread position:
               
240-502
               

               
Cow position:
               
chr9:8834303-8834037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
67, 98
               

               
Conread position:
               
240-502
               

               
Cow position:
               
chr9:21384114-21383860 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
32, 46
               

               
Conread position:
               
240-503
               

               
Cow position:
               
chr9:5342418-5342158 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
175, 88
               

               
Conread position:
               
240-504
               

               
Cow position:
               
chr9:37198955-37199218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
174, 195
               

               
Conread position:
               
240-508
               

               
Cow position:
               
chr9:61351517-61351239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
38, 58
               

               
Conread position:
               
240-528
               

               
Cow position:
               
chr9:22440645-22440364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
167, 79
               

               
Conread position:
               
240-538
               

               
Cow position:
               
chr9:40507765-40507477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
62, 18
               

               
Conread position:
               
240-539
               

               
Cow position:
               
chr9:31359433-31359730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
172, 93
               

               
Conread position:
               
240-540
               

               
Cow position:
               
chr9:60080721-60081036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
80, 162
               

               
Conread position:
               
240-542
               

               
Cow position:
               
chr9:33584856-33584550 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
173, 94
               

               
Conread position:
               
240-544
               

               
Cow position:
               
chr9:1878170-1877873 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
288, 62
               

               
Conread position:
               
240-555
               

               
Cow position:
               
chr9:7952730-7953049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
75, 35
               

               
Conread position:
               
240-559
               

               
Cow position:
               
chr9:33114167-33114499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
67, 102
               

               
Conread position:
               
240-566
               

               
Cow position:
               
chr9:11304261-11303917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
33, 9
               

               
Conread position:
               
240-567
               

               
Cow position:
               
chr9:19034182-19034502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
86, 161
               

               
Conread position:
               
240-568
               

               
Cow position:
               
chr9:3378590-3378907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
168, 46
               

               
Conread position:
               
240-576
               

               
Cow position:
               
chr9:6852223-6851897 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
244, 30
               

               
Conread position:
               
240-579
               

               
Cow position:
               
chr9:25556811-25557139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
177, 93
               

               
Conread position:
               
240-591
               

               
Cow position:
               
chr9:20579760-20579420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
241, 80
               

               
Conread position:
               
240-605
               

               
Cow position:
               
chr9:4341328-4340970 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
174, 46
               

               
Conread position:
               
240-613
               

               
Cow position:
               
chr9:41679590-41679955 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
179, 67
               

               
Conread position:
               
240-616
               

               
Cow position:
               
chr9:49847044-49847401 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
45, 62
               

               
Conread position:
               
240-622
               

               
Cow position:
               
chr9:48627851-48628244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 100
               

               
Conread position:
               
240-630
               

               
Cow position:
               
chr9:25804655-25805059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
10, 184
               

               
Conread position:
               
240-634
               

               
Cow position:
               
chr9:1532486-1532107 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
121, 33
               

               
Conread position:
               
240-650
               

               
Cow position:
               
chr9:49709668-49710085 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 203
               

               
Conread position:
               
240-652
               

               
Cow position:
               
chr9:9573148-9573578 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
51, 85
               

               
Conread position:
               
240-665
               

               
Cow position:
               
chr9:9596122-9595698 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
162, 80
               

               
Conread position:
               
240-668
               

               
Cow position:
               
chr9:58979233-58979660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 116
               

               
Conread position:
               
240-669
               

               
Cow position:
               
chr9:32307407-32306976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 98
               

               
Conread position:
               
240-669
               

               
Cow position:
               
chr9:55795586-55796019 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
86, 139
               

               
Conread position:
               
240-671
               

               
Cow position:
               
chr9:4861224-4861654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 66
               

               
Conread position:
               
240-671
               

               
Cow position:
               
chr9:34375098-34374667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 10
               

               
Conread position:
               
240-672
               

               
Cow position:
               
chr9:36491076-36490632 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
95, 295
               

               
Conread position:
               
240-672
               

               
Cow position:
               
chr9:50977427-50976983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 12
               

               
Conread position:
               
240-673
               

               
Cow position:
               
chr9:1751157-1751598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 46
               

               
Conread position:
               
240-673
               

               
Cow position:
               
chr9:3387544-3387954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
184, 45
               

               
Conread position:
               
240-673
               

               
Cow position:
               
chr9:5500692-5501115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
155, 43
               

               
Conread position:
               
240-673
               

               
Cow position:
               
chr9:8636506-8636916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
172, 36
               

               
Conread position:
               
240-673
               

               
Cow position:
               
chr9:9461839-9461391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 134
               

               
Conread position:
               
240-673
               

               
Cow position:
               
chr9:20681575-20681143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
8, 89
               

               
Conread position:
               
240-673
               

               
Cow position:
               
chr9:41282839-41283290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 188
               

               
Conread position:
               
240-673
               

               
Cow position:
               
chr9:47906457-47906025 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
86, 34
               

               
Conread position:
               
240-673
               

               
Cow position:
               
chr9:49764473-49764920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 211
               

               
Conread position:
               
240-674
               

               
Cow position:
               
chr9:5392901-5393316 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
180, 87
               

               
Conread position:
               
240-674
               

               
Cow position:
               
chr9:9443774-9443332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 38
               

               
Conread position:
               
240-674
               

               
Cow position:
               
chr9:51620272-51620701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 67
               

               
Conread position:
               
240-675
               

               
Cow position:
               
chr9:647600-648041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
7, 125
               

               
Conread position:
               
240-675
               

               
Cow position:
               
chr9:26403623-26404055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 45
               

               
Conread position:
               
240-675
               

               
Cow position:
               
chr9:54681349-54681768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
176, 36
               

               
Conread position:
               
241-385
               

               
Cow position:
               
chr9:21816360-21816504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
241-409
               

               
Cow position:
               
chr9:44918448-44918283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
40, 9
               

               
Conread position:
               
241-412
               

               
Cow position:
               
chr9:23840576-23840394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
53, 105
               

               
Conread position:
               
241-421
               

               
Cow position:
               
chr9:9091280-9091095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
241-422
               

               
Cow position:
               
chr9:17785740-17785555 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
57, 44
               

               
Conread position:
               
241-436
               

               
Cow position:
               
chr9:26388045-26388231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
241-451
               

               
Cow position:
               
chr9:3924284-3924484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
15, 46
               

               
Conread position:
               
241-453
               

               
Cow position:
               
chr9:32089221-32089432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
168, 33
               

               
Conread position:
               
241-453
               

               
Cow position:
               
chr9:36457825-36458044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
87, 0
               

               
Conread position:
               
241-471
               

               
Cow position:
               
chr9:5104581-5104342 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
80, 160
               

               
Conread position:
               
241-473
               

               
Cow position:
               
chr9:48016818-48017044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
166, 78
               

               
Conread position:
               
241-474
               

               
Cow position:
               
chr9:9686588-9686350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
55, 8
               

               
Conread position:
               
241-501
               

               
Cow position:
               
chr9:26102560-26102815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
11, 111
               

               
Conread position:
               
241-505
               

               
Cow position:
               
chr9:34279230-34278959 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
85, 167
               

               
Conread position:
               
241-510
               

               
Cow position:
               
chr9:9459818-9460076 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
153, 79
               

               
Conread position:
               
241-517
               

               
Cow position:
               
chr9:45171394-45171111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
55, 27
               

               
Conread position:
               
241-539
               

               
Cow position:
               
chr9:22408585-22408873 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
7, 233
               

               
Conread position:
               
241-563
               

               
Cow position:
               
chr9:63896375-63896693 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
192, 56
               

               
Conread position:
               
241-581
               

               
Cow position:
               
chr9:38624795-38624459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
85, 24
               

               
Conread position:
               
241-599
               

               
Cow position:
               
chr9:19067598-19067971 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 138
               

               
Conread position:
               
241-634
               

               
Cow position:
               
chr9:27279135-27279543 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 201
               

               
Conread position:
               
241-670
               

               
Cow position:
               
chr9:24887034-24887462 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 191
               

               
Conread position:
               
241-671
               

               
Cow position:
               
chr9:5327091-5327516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
175, 69
               

               
Conread position:
               
241-673
               

               
Cow position:
               
chr9:15215860-15215417 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 12
               

               
Conread position:
               
241-673
               

               
Cow position:
               
chr9:61847286-61846886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
291, 66
               

               
Conread position:
               
241-674
               

               
Cow position:
               
chr9:47868853-47869272 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
239, 44
               

               
Conread position:
               
241-675
               

               
Cow position:
               
chr9:28747688-28747256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
177, 8
               

               
Conread position:
               
242-395
               

               
Cow position:
               
chr9:30194841-30194994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
98, 77
               

               
Conread position:
               
242-412
               

               
Cow position:
               
chr9:11380815-11380646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
242-412
               

               
Cow position:
               
chr9:34760536-34760364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
242-422
               

               
Cow position:
               
chr9:8645095-8645278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
86, 11
               

               
Conread position:
               
242-468
               

               
Cow position:
               
chr9:7543427-7543208 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
152, 31
               

               
Conread position:
               
242-472
               

               
Cow position:
               
chr9:36627952-36628180 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
176, 78
               

               
Conread position:
               
242-473
               

               
Cow position:
               
chr9:63361881-63361656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
171, 44
               

               
Conread position:
               
242-474
               

               
Cow position:
               
chr9:44584431-44584655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
182, 79
               

               
Conread position:
               
242-482
               

               
Cow position:
               
chr9:50382488-50382256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
242-495
               

               
Cow position:
               
chr9:59998200-59997947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
60, 44
               

               
Conread position:
               
242-512
               

               
Cow position:
               
chr9:35547094-35547374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
5, 122
               

               
Conread position:
               
242-527
               

               
Cow position:
               
chr9:38941607-38941315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
84, 194
               

               
Conread position:
               
242-534
               

               
Cow position:
               
chr9:6189533-6189247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
171, 59
               

               
Conread position:
               
242-539
               

               
Cow position:
               
chr9:4263258-4262963 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
241, 8
               

               
Conread position:
               
242-574
               

               
Cow position:
               
chr9:5263334-5263669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
172, 34
               

               
Conread position:
               
242-633
               

               
Cow position:
               
chr9:62724372-62724770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
76, 43
               

               
Conread position:
               
242-636
               

               
Cow position:
               
chr9:58614327-58614720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 79
               

               
Conread position:
               
242-643
               

               
Cow position:
               
chr9:45141766-45141371 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
175, 71
               

               
Conread position:
               
242-672
               

               
Cow position:
               
chr9:6192627-6192196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
154, 85
               

               
Conread position:
               
242-673
               

               
Cow position:
               
chr9:9403341-9402921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
152, 25
               

               
Conread position:
               
242-673
               

               
Cow position:
               
chr9:31346780-31347218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 6
               

               
Conread position:
               
242-673
               

               
Cow position:
               
chr9:32732834-32732422 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
242, 71
               

               
Conread position:
               
242-673
               

               
Cow position:
               
chr9:37016731-37017148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 14
               

               
Conread position:
               
242-674
               

               
Cow position:
               
chr9:9516918-9516505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
240, 68
               

               
Conread position:
               
242-677
               

               
Cow position:
               
chr9:6951942-6952359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
169, 65
               

               
Conread position:
               
242-687
               

               
Cow position:
               
chr9:26279343-26278895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
347
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 197
               

               
Conread position:
               
243-426
               

               
Cow position:
               
chr9:55807465-55807648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
174, 81
               

               
Conread position:
               
243-440
               

               
Cow position:
               
chr9:34707479-34707282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
175, 91
               

               
Conread position:
               
243-672
               

               
Cow position:
               
chr9:9199940-9199521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
175, 34
               

               
Conread position:
               
243-673
               

               
Cow position:
               
chr9:34286629-34287058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
86, 193
               

               
Conread position:
               
243-675
               

               
Cow position:
               
chr9:6934250-6933806 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 161
               

               
Conread position:
               
243-675
               

               
Cow position:
               
chr9:11299842-11299431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
286, 84
               

               
Conread position:
               
243-686
               

               
Cow position:
               
chr9:17872276-17871830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
169, 76
               

               
Conread position:
               
244-431
               

               
Cow position:
               
chr9:34362568-34362758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
245-422
               

               
Cow position:
               
chr9:24079138-24079313 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
173, 75
               

               
Conread position:
               
245-422
               

               
Cow position:
               
chr9:48282027-48282213 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
245-460
               

               
Cow position:
               
chr9:21292574-21292357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
170, 83
               

               
Conread position:
               
245-468
               

               
Cow position:
               
chr9:43159588-43159810 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
151, 28
               

               
Conread position:
               
245-586
               

               
Cow position:
               
chr9:51721054-51720721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
222, 40
               

               
Conread position:
               
245-592
               

               
Cow position:
               
chr9:56065399-56065735 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
291, 74
               

               
Conread position:
               
245-652
               

               
Cow position:
               
chr9:64105736-64106149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
151, 89
               

               
Conread position:
               
245-672
               

               
Cow position:
               
chr9:8723628-8724059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 60
               

               
Conread position:
               
245-673
               

               
Cow position:
               
chr9:34689772-34689348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
89, 167
               

               
Conread position:
               
245-673
               

               
Cow position:
               
chr9:35167002-35167432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 28
               

               
Conread position:
               
246-412
               

               
Cow position:
               
chr9:11873461-11873304 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
246-423
               

               
Cow position:
               
chr9:48901001-48900824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
78, 33
               

               
Conread position:
               
246-430
               

               
Cow position:
               
chr9:34423452-34423639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
82, 177
               

               
Conread position:
               
246-672
               

               
Cow position:
               
chr9:33940431-33940870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 15
               

               
Conread position:
               
246-673
               

               
Cow position:
               
chr9:15806092-15805657 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 108
               

               
Conread position:
               
249-412
               

               
Cow position:
               
chr9:45740307-45740142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
249-421
               

               
Cow position:
               
chr9:32773059-32773223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
168, 56
               

               
Conread position:
               
249-430
               

               
Cow position:
               
chr9:26394511-26394329 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
164, 84
               

               
Conread position:
               
249-574
               

               
Cow position:
               
chr9:5456335-5456005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
93, 70
               

               
Conread position:
               
249-588
               

               
Cow position:
               
chr9:12226148-12225798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 120
               

               
Conread position:
               
249-597
               

               
Cow position:
               
chr9:30123767-30124112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 56
               

               
Conread position:
               
249-600
               

               
Cow position:
               
chr9:11123643-11123293 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
168, 72
               

               
Conread position:
               
249-640
               

               
Cow position:
               
chr9:43623102-43623491 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
89, 114
               

               
Conread position:
               
249-650
               

               
Cow position:
               
chr9:33822954-33823339 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
89, 22
               

               
Conread position:
               
249-650
               

               
Cow position:
               
chr9:56011349-56011738 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
166, 25
               

               
Conread position:
               
249-671
               

               
Cow position:
               
chr9:20847783-20848201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 25
               

               
Conread position:
               
249-673
               

               
Cow position:
               
chr9:33219120-33218688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 137
               

               
Conread position:
               
250-456
               

               
Cow position:
               
chr9:49402486-49402697 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
59, 154
               

               
Conread position:
               
250-673
               

               
Cow position:
               
chr9:16300736-16300307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 23
               

               
Conread position:
               
250-674
               

               
Cow position:
               
chr9:61738759-61739182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 191
               

               
Conread position:
               
250-676
               

               
Cow position:
               
chr9:4629947-4630369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
174, 72
               

               
Conread position:
               
251-406
               

               
Cow position:
               
chr9:21780762-21780918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
76, 44
               

               
Conread position:
               
251-431
               

               
Cow position:
               
chr9:43679960-43680142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
167, 83
               

               
Conread position:
               
251-457
               

               
Cow position:
               
chr9:39148921-39149126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
164, 73
               

               
Conread position:
               
251-468
               

               
Cow position:
               
chr9:45749271-45749499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
251-474
               

               
Cow position:
               
chr9:7611948-7611726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
178, 46
               

               
Conread position:
               
251-490
               

               
Cow position:
               
chr9:54986322-54986074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
75, 215
               

               
Conread position:
               
251-521
               

               
Cow position:
               
chr9:9358657-9358924 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
164, 17
               

               
Conread position:
               
251-587
               

               
Cow position:
               
chr9:8901390-8901042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 108
               

               
Conread position:
               
251-594
               

               
Cow position:
               
chr9:62150950-62151290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
60, 35
               

               
Conread position:
               
251-605
               

               
Cow position:
               
chr9:9815252-9815613 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 22
               

               
Conread position:
               
251-629
               

               
Cow position:
               
chr9:17799474-17799850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
140, 69
               

               
Conread position:
               
251-673
               

               
Cow position:
               
chr9:63785070-63784661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
164, 59
               

               
Conread position:
               
251-674
               

               
Cow position:
               
chr9:9724040-9723617 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 166
               

               
Conread position:
               
251-674
               

               
Cow position:
               
chr9:22152243-22151822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
164, 73
               

               
Conread position:
               
251-674
               

               
Cow position:
               
chr9:22443784-22443346 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
168, 73
               

               
Conread position:
               
251-675
               

               
Cow position:
               
chr9:9753563-9753130 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 10
               

               
Conread position:
               
252-422
               

               
Cow position:
               
chr9:8537146-8537315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
76, 103
               

               
Conread position:
               
252-422
               

               
Cow position:
               
chr9:14357252-14357426 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
253-417
               

               
Cow position:
               
chr9:37955333-37955166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
47, 32
               

               
Conread position:
               
253-670
               

               
Cow position:
               
chr9:54716776-54716361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 165
               

               
Conread position:
               
253-675
               

               
Cow position:
               
chr9:52485071-52484651 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
221, 71
               

               
Conread position:
               
254-422
               

               
Cow position:
               
chr9:52998536-52998369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
62, 15
               

               
Conread position:
               
254-429
               

               
Cow position:
               
chr9:1712866-1712686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
254-430
               

               
Cow position:
               
chr9:64310937-64310758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
254-453
               

               
Cow position:
               
chr9:22165875-22165670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
62, 185
               

               
Conread position:
               
254-468
               

               
Cow position:
               
chr9:55529645-55529853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
254-500
               

               
Cow position:
               
chr9:5164143-5163893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
72, 15
               

               
Conread position:
               
254-506
               

               
Cow position:
               
chr9:25400345-25400100 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
161, 52
               

               
Conread position:
               
254-527
               

               
Cow position:
               
chr9:21080415-21080679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
160, 19
               

               
Conread position:
               
254-673
               

               
Cow position:
               
chr9:10010654-10011064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 116
               

               
Conread position:
               
254-674
               

               
Cow position:
               
chr9:29185298-29184868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 188
               

               
Conread position:
               
254-675
               

               
Cow position:
               
chr9:34958210-34957786 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
159, 73
               

               
Conread position:
               
254-675
               

               
Cow position:
               
chr9:52578696-52578267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
96, 29
               

               
Conread position:
               
255-591
               

               
Cow position:
               
chr9:31638815-31638455 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
14, 36
               

               
Conread position:
               
255-627
               

               
Cow position:
               
chr9:16811814-16811441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
14, 39
               

               
Conread position:
               
257-468
               

               
Cow position:
               
chr9:31514090-31513881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
69, 144
               

               
Conread position:
               
257-503
               

               
Cow position:
               
chr9:5469714-5469956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
69, 53
               

               
Conread position:
               
257-509
               

               
Cow position:
               
chr9:29195187-29194923 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
58, 185
               

               
Conread position:
               
257-528
               

               
Cow position:
               
chr9:29339467-29339207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
226, 42
               

               
Conread position:
               
257-651
               

               
Cow position:
               
chr9:3185974-3186385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
172, 64
               

               
Conread position:
               
257-663
               

               
Cow position:
               
chr9:18216067-18215655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
69, 95
               

               
Conread position:
               
257-671
               

               
Cow position:
               
chr9:38846496-38846087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 166
               

               
Conread position:
               
257-673
               

               
Cow position:
               
chr9:3070572-3070159 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
60, 109
               

               
Conread position:
               
257-673
               

               
Cow position:
               
chr9:55288044-55287627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 72
               

               
Conread position:
               
258-458
               

               
Cow position:
               
chr9:11030035-11030232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
7, 64
               

               
Conread position:
               
258-465
               

               
Cow position:
               
chr9:44944627-44944425 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
199, 49
               

               
Conread position:
               
258-494
               

               
Cow position:
               
chr9:24652245-24652496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
49, 81
               

               
Conread position:
               
258-673
               

               
Cow position:
               
chr9:29006405-29006824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
159, 70
               

               
Conread position:
               
259-534
               

               
Cow position:
               
chr9:3353213-3353475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
11, 26
               

               
Conread position:
               
259-673
               

               
Cow position:
               
chr9:30402582-30402156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 169
               

               
Conread position:
               
261-452
               

               
Cow position:
               
chr9:20637224-20637415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
154, 66
               

               
Conread position:
               
261-673
               

               
Cow position:
               
chr9:21030153-21030580 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
46, 82
               

               
Conread position:
               
261-676
               

               
Cow position:
               
chr9:23388831-23388410 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 136
               

               
Conread position:
               
262-467
               

               
Cow position:
               
chr9:55495139-55494929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
265-492
               

               
Cow position:
               
chr9:33541905-33542139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
267-422
               

               
Cow position:
               
chr9:35403441-35403594 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
33, 18
               

               
Conread position:
               
267-568
               

               
Cow position:
               
chr9:41394795-41394492 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
64, 176
               

               
Conread position:
               
268-673
               

               
Cow position:
               
chr9:57897247-57896861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
149, 42
               

               
Conread position:
               
270-430
               

               
Cow position:
               
chr9:43202193-43202355 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
138, 63
               

               
Conread position:
               
270-475
               

               
Cow position:
               
chr9:39758375-39758583 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
39, 19
               

               
Conread position:
               
271-422
               

               
Cow position:
               
chr9:5172675-5172521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
273-670
               

               
Cow position:
               
chr9:20416653-20416247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 148
               

               
Conread position:
               
274-474
               

               
Cow position:
               
chr9:52258204-52258003 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
40, 126
               

               
Conread position:
               
276-468
               

               
Cow position:
               
chr9:22466641-22466830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
141, 44
               

               
Conread position:
               
277-672
               

               
Cow position:
               
chr9:17741076-17740681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
137, 112
               

               
Conread position:
               
279-673
               

               
Cow position:
               
chr9:41513504-41513883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
260, 56
               

               
Conread position:
               
285-673
               

               
Cow position:
               
chr9:8534815-8534419 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
134, 20
               

               
Conread position:
               
286-452
               

               
Cow position:
               
chr9:6293468-6293637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
23, 150
               

               
Conread position:
               
286-528
               

               
Cow position:
               
chr9:6596351-6596117 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
126, 34
               

               
Conread position:
               
289-675
               

               
Cow position:
               
chr9:33092832-33093210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
37, 122
               

               
Conread position:
               
291-605
               

               
Cow position:
               
chr9:9654427-9654113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
188, 42
               

               
Conread position:
               
291-674
               

               
Cow position:
               
chr9:36445499-36445887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 47
               

               
Conread position:
               
301-571
               

               
Cow position:
               
chr9:64064472-64064200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
118, 9
               

               
Conread position:
               
301-664
               

               
Cow position:
               
chr9:4646433-4646073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
118, 50
               

               
Conread position:
               
301-670
               

               
Cow position:
               
chr9:3782260-3782624 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
117, 25
               

               
Conread position:
               
301-673
               

               
Cow position:
               
chr9:54528403-54528779 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 33
               

               
Conread position:
               
302-534
               

               
Cow position:
               
chr9:5399023-5399262 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
14, 140
               

               
Conread position:
               
302-634
               

               
Cow position:
               
chr9:32115711-32115383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
13, 87
               

               
Conread position:
               
302-668
               

               
Cow position:
               
chr9:31079186-31078822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
116, 18
               

               
Conread position:
               
302-673
               

               
Cow position:
               
chr9:23042665-23043039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
14, 114
               

               
Conread position:
               
302-673
               

               
Cow position:
               
chr9:64559991-64559623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
112, 31
               

               
Conread position:
               
302-674
               

               
Cow position:
               
chr9:3958957-3959319 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
15, 33
               

               
Conread position:
               
303-475
               

               
Cow position:
               
chr9:49545474-49545303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
15, 32
               

               
Conread position:
               
303-608
               

               
Cow position:
               
chr9:37677785-37678090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
7, 32
               

               
Conread position:
               
303-673
               

               
Cow position:
               
chr9:21888060-21888433 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 131
               

               
Conread position:
               
305-430
               

               
Cow position:
               
chr9:26277725-26277849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
109, 27
               

               
Conread position:
               
305-659
               

               
Cow position:
               
chr9:18217205-18216850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
112, 28
               

               
Conread position:
               
305-672
               

               
Cow position:
               
chr9:10309102-10308744 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
225, 17
               

               
Conread position:
               
306-614
               

               
Cow position:
               
chr9:3738327-3738013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
108, 18
               

               
Conread position:
               
306-634
               

               
Cow position:
               
chr9:4580508-4580195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
110, 11
               

               
Conread position:
               
307-506
               

               
Cow position:
               
chr9:41781552-41781750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
109, 20
               

               
Conread position:
               
307-609
               

               
Cow position:
               
chr9:8524757-8525040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
191, 27
               

               
Conread position:
               
308-422
               

               
Cow position:
               
chr9:23403715-23403829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
116
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
105, 25
               

               
Conread position:
               
308-467
               

               
Cow position:
               
chr9:19758616-19758776 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
109, 122
               

               
Conread position:
               
309-675
               

               
Cow position:
               
chr9:44467442-44467083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
218, 110
               

               
Conread position:
               
310-452
               

               
Cow position:
               
chr9:55354508-55354653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
16, 126
               

               
Conread position:
               
310-506
               

               
Cow position:
               
chr9:44770292-44770101 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
164, 17
               

               
Conread position:
               
310-605
               

               
Cow position:
               
chr9:50543528-50543224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
78, 17
               

               
Conread position:
               
310-617
               

               
Cow position:
               
chr9:62668149-62668464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
108, 23
               

               
Conread position:
               
310-630
               

               
Cow position:
               
chr9:4268083-4267759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
108, 17
               

               
Conread position:
               
310-651
               

               
Cow position:
               
chr9:8562721-8563083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
108, 23
               

               
Conread position:
               
310-660
               

               
Cow position:
               
chr9:50139184-50139532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
105, 24
               

               
Conread position:
               
310-669
               

               
Cow position:
               
chr9:59386872-59386517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 130
               

               
Conread position:
               
310-671
               

               
Cow position:
               
chr9:42446083-42445720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
108, 27
               

               
Conread position:
               
310-673
               

               
Cow position:
               
chr9:1520840-1520467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 24
               

               
Conread position:
               
310-673
               

               
Cow position:
               
chr9:8288515-8288881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 80
               

               
Conread position:
               
310-673
               

               
Cow position:
               
chr9:39681235-39681620 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 127
               

               
Conread position:
               
311-445
               

               
Cow position:
               
chr9:34065650-34065513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
104, 22
               

               
Conread position:
               
311-669
               

               
Cow position:
               
chr9:51204632-51204985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
107, 23
               

               
Conread position:
               
311-673
               

               
Cow position:
               
chr9:23264894-23265246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
108, 22
               

               
Conread position:
               
311-673
               

               
Cow position:
               
chr9:26435158-26434803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
13, 23
               

               
Conread position:
               
311-673
               

               
Cow position:
               
chr9:50081140-50080782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
104, 22
               

               
Conread position:
               
311-673
               

               
Cow position:
               
chr9:56772976-56773343 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
107, 22
               

               
Conread position:
               
311-675
               

               
Cow position:
               
chr9:53413338-53412983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
118, 22
               

               
Conread position:
               
311-687
               

               
Cow position:
               
chr9:17411295-17410907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
13, 24
               

               
Conread position:
               
312-672
               

               
Cow position:
               
chr9:64155952-64155593 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 128
               

               
Conread position:
               
312-674
               

               
Cow position:
               
chr9:5245753-5246114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 22
               

               
Conread position:
               
313-468
               

               
Cow position:
               
chr9:35793579-35793728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
102, 20
               

               
Conread position:
               
313-530
               

               
Cow position:
               
chr9:38645442-38645223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
91, 20
               

               
Conread position:
               
313-540
               

               
Cow position:
               
chr9:52513546-52513322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
106, 20
               

               
Conread position:
               
313-645
               

               
Cow position:
               
chr9:11319734-11319396 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 123
               

               
Conread position:
               
313-672
               

               
Cow position:
               
chr9:62399866-62400219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
98, 21
               

               
Conread position:
               
313-674
               

               
Cow position:
               
chr9:61997701-61997330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
92, 20
               

               
Conread position:
               
314-521
               

               
Cow position:
               
chr9:46664728-46664933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
39, 23
               

               
Conread position:
               
314-528
               

               
Cow position:
               
chr9:52598818-52598604 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
102, 19
               

               
Conread position:
               
314-673
               

               
Cow position:
               
chr9:55084398-55084033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
105, 19
               

               
Conread position:
               
314-673
               

               
Cow position:
               
chr9:63745718-63746068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
150, 19
               

               
Conread position:
               
314-674
               

               
Cow position:
               
chr9:18342634-18342988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 121
               

               
Conread position:
               
315-544
               

               
Cow position:
               
chr9:23797139-23797371 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
104, 120
               

               
Conread position:
               
315-663
               

               
Cow position:
               
chr9:33681563-33681938 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
103, 18
               

               
Conread position:
               
315-673
               

               
Cow position:
               
chr9:5594406-5594764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
108, 104
               

               
Conread position:
               
315-673
               

               
Cow position:
               
chr9:62357626-62357267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
12, 118
               

               
Conread position:
               
315-673
               

               
Cow position:
               
chr9:62442194-62442546 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
109, 19
               

               
Conread position:
               
315-675
               

               
Cow position:
               
chr9:28354421-28354799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
109, 18
               

               
Conread position:
               
316-554
               

               
Cow position:
               
chr9:42478577-42478341 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
99, 17
               

               
Conread position:
               
317-590
               

               
Cow position:
               
chr9:55321542-55321822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
102, 114
               

               
Conread position:
               
318-625
               

               
Cow position:
               
chr9:43443711-43444011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
50, 15
               

               
Conread position:
               
319-469
               

               
Cow position:
               
chr9:34973805-34973653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
111, 0
               

               
Conread position:
               
320-549
               

               
Cow position:
               
chr9:52839970-52839748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
99, 13
               

               
Conread position:
               
320-671
               

               
Cow position:
               
chr9:29684054-29684409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
104, 23
               

               
Conread position:
               
320-673
               

               
Cow position:
               
chr9:9625102-9624764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
85, 53
               

               
Conread position:
               
321-460
               

               
Cow position:
               
chr9:13742433-13742573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
94, 6
               

               
Conread position:
               
321-519
               

               
Cow position:
               
chr9:22461823-22461631 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
24, 72
               

               
Conread position:
               
321-519
               

               
Cow position:
               
chr9:28754729-28754929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
92, 12
               

               
Conread position:
               
321-725
               

               
Cow position:
               
chr9:62656712-62657109 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
73, 115
               

               
Conread position:
               
322-457
               

               
Cow position:
               
chr9:34014338-34014202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
93, 11
               

               
Conread position:
               
322-520
               

               
Cow position:
               
chr9:28378879-28379080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
107, 11
               

               
Conread position:
               
322-528
               

               
Cow position:
               
chr9:3343660-3343860 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
93, 12
               

               
Conread position:
               
323-521
               

               
Cow position:
               
chr9:23788351-23788549 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
93, 11
               

               
Conread position:
               
323-552
               

               
Cow position:
               
chr9:33696947-33697170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
146, 37
               

               
Conread position:
               
323-573
               

               
Cow position:
               
chr9:5077793-5077553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
95, 10
               

               
Conread position:
               
323-673
               

               
Cow position:
               
chr9:7634183-7634531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
95, 14
               

               
Conread position:
               
323-675
               

               
Cow position:
               
chr9:43870887-43871238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
94, 10
               

               
Conread position:
               
324-674
               

               
Cow position:
               
chr9:55075215-55074870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
203, 10
               

               
Conread position:
               
325-636
               

               
Cow position:
               
chr9:62908107-62907813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
12, 90
               

               
Conread position:
               
327-592
               

               
Cow position:
               
chr9:34106629-34106909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
22, 30
               

               
Conread position:
               
327-644
               

               
Cow position:
               
chr9:15225381-15225055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
89, 98
               

               
Conread position:
               
327-665
               

               
Cow position:
               
chr9:25921738-25922079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
92, 111
               

               
Conread position:
               
327-673
               

               
Cow position:
               
chr9:34309944-34310298 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
156, 50
               

               
Conread position:
               
328-539
               

               
Cow position:
               
chr9:3774081-3774290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
90, 66
               

               
Conread position:
               
328-539
               

               
Cow position:
               
chr9:10819912-10819703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
96, 90
               

               
Conread position:
               
328-630
               

               
Cow position:
               
chr9:1972864-1973163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
107, 79
               

               
Conread position:
               
328-673
               

               
Cow position:
               
chr9:5763714-5763366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 22
               

               
Conread position:
               
328-673
               

               
Cow position:
               
chr9:37069643-37069305 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 112
               

               
Conread position:
               
328-674
               

               
Cow position:
               
chr9:5219256-5218914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
86, 109
               

               
Conread position:
               
329-466
               

               
Cow position:
               
chr9:31098969-31098828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
90, 106
               

               
Conread position:
               
329-675
               

               
Cow position:
               
chr9:45756280-45756623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
100, 200
               

               
Conread position:
               
330-673
               

               
Cow position:
               
chr9:32371833-32371496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
211, 59
               

               
Conread position:
               
331-668
               

               
Cow position:
               
chr9:55889734-55890068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 13
               

               
Conread position:
               
331-675
               

               
Cow position:
               
chr9:59795375-59795014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
29, 100
               

               
Conread position:
               
332-600
               

               
Cow position:
               
chr9:49416907-49417182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 107
               

               
Conread position:
               
333-686
               

               
Cow position:
               
chr9:5319543-5319907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
86, 56
               

               
Conread position:
               
336-615
               

               
Cow position:
               
chr9:19493542-19493253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 102
               

               
Conread position:
               
337-473
               

               
Cow position:
               
chr9:38289396-38289263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
337-517
               

               
Cow position:
               
chr9:55532739-55532922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
91, 163
               

               
Conread position:
               
337-518
               

               
Cow position:
               
chr9:32982150-32981963 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
81, 103
               

               
Conread position:
               
337-565
               

               
Cow position:
               
chr9:58670668-58670887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
146, 14
               

               
Conread position:
               
337-584
               

               
Cow position:
               
chr9:49293218-49292970 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
81, 102
               

               
Conread position:
               
337-652
               

               
Cow position:
               
chr9:767224-766907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
82, 22
               

               
Conread position:
               
337-672
               

               
Cow position:
               
chr9:46316856-46316525 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 45
               

               
Conread position:
               
337-673
               

               
Cow position:
               
chr9:5509651-5509988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
82, 9
               

               
Conread position:
               
337-673
               

               
Cow position:
               
chr9:24872761-24873113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
81, 69
               

               
Conread position:
               
337-675
               

               
Cow position:
               
chr9:6879704-6880036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
147, 76
               

               
Conread position:
               
337-675
               

               
Cow position:
               
chr9:7362953-7363293 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
146, 76
               

               
Conread position:
               
338-522
               

               
Cow position:
               
chr9:26310432-26310621 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
80, 97
               

               
Conread position:
               
338-553
               

               
Cow position:
               
chr9:51557559-51557351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
8, 0
               

               
Conread position:
               
339-672
               

               
Cow position:
               
chr9:3220063-3220386 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
80, 96
               

               
Conread position:
               
344-517
               

               
Cow position:
               
chr9:40776730-40776905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
71, 91
               

               
Conread position:
               
344-540
               

               
Cow position:
               
chr9:54178488-54178302 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
345-586
               

               
Cow position:
               
chr9:44921467-44921210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
42, 97
               

               
Conread position:
               
346-539
               

               
Cow position:
               
chr9:41486308-41486111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
68, 26
               

               
Conread position:
               
347-673
               

               
Cow position:
               
chr9:1949852-1950183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 125
               

               
Conread position:
               
347-675
               

               
Cow position:
               
chr9:39577674-39578000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
138, 32
               

               
Conread position:
               
348-576
               

               
Cow position:
               
chr9:43936881-43937110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
69, 116
               

               
Conread position:
               
352-610
               

               
Cow position:
               
chr9:47500272-47500002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
77, 171
               

               
Conread position:
               
354-535
               

               
Cow position:
               
chr9:53326809-53326625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
65, 71
               

               
Conread position:
               
354-592
               

               
Cow position:
               
chr9:9823564-9823319 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
65, 77
               

               
Conread position:
               
354-675
               

               
Cow position:
               
chr9:17928699-17929039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
70, 65
               

               
Conread position:
               
354-675
               

               
Cow position:
               
chr9:24997575-24997250 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 32
               

               
Conread position:
               
359-587
               

               
Cow position:
               
chr9:43875772-43875540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
33, 81
               

               
Conread position:
               
359-616
               

               
Cow position:
               
chr9:4512435-4512698 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
70, 64
               

               
Conread position:
               
359-673
               

               
Cow position:
               
chr9:35904798-35904487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
56, 85
               

               
Conread position:
               
359-675
               

               
Cow position:
               
chr9:25964886-25964558 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
361-697
               

               
Cow position:
               
chr9:22114686-22114346 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 76
               

               
Conread position:
               
363-629
               

               
Cow position:
               
chr9:53211540-53211277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
62, 56
               

               
Conread position:
               
364-673
               

               
Cow position:
               
chr9:5162098-5161802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
51, 60
               

               
Conread position:
               
368-629
               

               
Cow position:
               
chr9:44834007-44833745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
62, 89
               

               
Conread position:
               
368-662
               

               
Cow position:
               
chr9:48107160-48106866 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
47, 149
               

               
Conread position:
               
368-675
               

               
Cow position:
               
chr9:49983133-49982831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
62, 101
               

               
Conread position:
               
371-687
               

               
Cow position:
               
chr9:41789243-41789556 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
53, 48
               

               
Conread position:
               
375-674
               

               
Cow position:
               
chr9:35849867-35850164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
44, 63
               

               
Conread position:
               
378-662
               

               
Cow position:
               
chr9:62134658-62134367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
22, 9
               

               
Conread position:
               
384-673
               

               
Cow position:
               
chr9:38343862-38344158 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 32
               

               
Conread position:
               
384-675
               

               
Cow position:
               
chr9:9416423-9416141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
26, 53
               

               
Conread position:
               
389-634
               

               
Cow position:
               
chr9:33038483-33038233 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
36, 12
               

               
Conread position:
               
390-668
               

               
Cow position:
               
chr9:28735466-28735738 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
40, 82
               

               
Conread position:
               
396-674
               

               
Cow position:
               
chr9:1952286-1952004 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 23
               

               
Conread position:
               
399-673
               

               
Cow position:
               
chr9:6225468-6225188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 39
               

               
Conread position:
               
399-674
               

               
Cow position:
               
chr9:3410769-3411035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
15, 38
               

               
Conread position:
               
401-673
               

               
Cow position:
               
chr9:20961291-20961024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
23, 18
               

               
Conread position:
               
405-640
               

               
Cow position:
               
chr9:32710922-32711163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
19, 14
               

               
Conread position:
               
406-673
               

               
Cow position:
               
chr9:20989455-20989190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
15, 31
               

               
Conread position:
               
408-652
               

               
Cow position:
               
chr9:35360108-35359859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
16, 11
               

               
Conread position:
               
410-667
               

               
Cow position:
               
chr9:1997134-1997390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
14, 161
               

               
Conread position:
               
415-673
               

               
Cow position:
               
chr9:30749585-30749321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
15, 9
               

               
Conread position:
               
417-625
               

               
Cow position:
               
chr9:30195222-30195429 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
67, 18
               

               
Conread position:
               
417-671
               

               
Cow position:
               
chr9:29035028-29034777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
49, 18
               

               
Conread position:
               
417-673
               

               
Cow position:
               
chr9:4128773-4128520 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
113, 19
               

               
Conread position:
               
417-673
               

               
Cow position:
               
chr9:22361018-22361278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 18
               

               
Conread position:
               
417-674
               

               
Cow position:
               
chr9:40105475-40105742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
111, 11
               

               
Conread position:
               
418-671
               

               
Cow position:
               
chr9:1712467-1712223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
74, 17
               

               
Conread position:
               
425-580
               

               
Cow position:
               
chr9:4324141-4323983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
102, 11
               

               
Conread position:
               
434-620
               

               
Cow position:
               
chr9:49279488-49279689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
48, 96
               

               
Conread position:
               
434-673
               

               
Cow position:
               
chr9:35306094-35305856 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
36, 86
               

               
Conread position:
               
435-634
               

               
Cow position:
               
chr9:50667446-50667649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
46, 85
               

               
Conread position:
               
435-672
               

               
Cow position:
               
chr9:32812374-32812611 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
104, 40
               

               
Conread position:
               
436-625
               

               
Cow position:
               
chr9:51011510-51011324 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
103, 27
               

               
Conread position:
               
436-673
               

               
Cow position:
               
chr9:18002928-18002685 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
48, 87
               

               
Conread position:
               
436-674
               

               
Cow position:
               
chr9:64517073-64516831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
93, 213
               

               
Conread position:
               
438-673
               

               
Cow position:
               
chr9:41652814-41653053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
91, 82
               

               
Conread position:
               
438-674
               

               
Cow position:
               
chr9:34666448-34666674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
46, 161
               

               
Conread position:
               
438-681
               

               
Cow position:
               
chr9:40603973-40604221 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
82, 152
               

               
Conread position:
               
439-672
               

               
Cow position:
               
chr9:26390798-26391031 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
46, 7
               

               
Conread position:
               
440-674
               

               
Cow position:
               
chr9:60037680-60037921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
43, 161
               

               
Conread position:
               
440-675
               

               
Cow position:
               
chr9:53602457-53602679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
28, 42
               

               
Conread position:
               
440-676
               

               
Cow position:
               
chr9:49403789-49404020 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
36, 81
               

               
Conread position:
               
441-672
               

               
Cow position:
               
chr9:22228049-22227823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
28, 41
               

               
Conread position:
               
444-674
               

               
Cow position:
               
chr9:36066939-36067171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
26, 79
               

               
Conread position:
               
450-673
               

               
Cow position:
               
chr9:42998431-42998207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
33, 74
               

               
Conread position:
               
453-673
               

               
Cow position:
               
chr9:16218606-16218379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
28, 17
               

               
Conread position:
               
462-673
               

               
Cow position:
               
chr9:27052286-27052069 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
23, 59
               

               
Conread position:
               
463-665
               

               
Cow position:
               
chr9:45171109-45170913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
67, 8
               

               
Conread position:
               
472-673
               

               
Cow position:
               
chr9:53608334-53608130 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
7, 176
               

               
Conread position:
               
483-667
               

               
Cow position:
               
chr9:38875503-38875316 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
43, 36
               
Show alignments to all cow chromosomes.