Cow genome map
| Conread name: | LyN1-MLN01H100041 |
| Conread position: | 347-518 |
| Cow position: | chr11:30700518-30700687 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 62, 9 |
| Conread position: | 350-540 |
| Cow position: | chr11:4267130-4266942 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 143 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 59, 164 |
| Conread position: | 351-540 |
| Cow position: | chr11:12353866-12353679 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 147 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 58, 155 |
| Conread position: | 351-548 |
| Cow position: | chr11:12317044-12316842 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 154 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 58, 197 |
| Conread position: | 352-518 |
| Cow position: | chr11:41167666-41167501 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 57, 7 |
| Conread position: | 352-519 |
| Cow position: | chr11:33733555-33733391 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 106, 7 |
| Conread position: | 353-504 |
| Cow position: | chr11:10958857-10959009 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 114 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 353-511 |
| Cow position: | chr11:63507538-63507696 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 128 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 59, 122 |
| Conread position: | 353-513 |
| Cow position: | chr11:15995522-15995683 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 353-517 |
| Cow position: | chr11:260115-259951 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 139 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 56, 107 |
| Conread position: | 353-518 |
| Cow position: | chr11:14259933-14259768 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 127 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 56, 152 |
| Conread position: | 353-518 |
| Cow position: | chr11:40487177-40487346 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 90, 114 |
| Conread position: | 353-518 |
| Cow position: | chr11:80591385-80591550 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 127 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 56, 153 |
| Conread position: | 353-519 |
| Cow position: | chr11:25332708-25332543 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 129 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 353-519 |
| Cow position: | chr11:53428994-53428828 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 56, 84 |
| Conread position: | 353-519 |
| Cow position: | chr11:56227958-56228124 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 140 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 56, 14 |
| Conread position: | 353-519 |
| Cow position: | chr11:65410071-65409905 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 132 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 18, 50 |
| Conread position: | 353-532 |
| Cow position: | chr11:26550503-26550681 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 141 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 40, 159 |
| Conread position: | 353-533 |
| Cow position: | chr11:11857736-11857917 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 47, 175 |
| Conread position: | 353-538 |
| Cow position: | chr11:11991025-11991210 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 146 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 61, 155 |
| Conread position: | 353-538 |
| Cow position: | chr11:71332530-71332710 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 141 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 56, 101 |
| Conread position: | 353-539 |
| Cow position: | chr11:32077755-32077571 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 140 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 56, 153 |
| Conread position: | 353-540 |
| Cow position: | chr11:4024327-4024142 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 138 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 30, 153 |
| Conread position: | 353-540 |
| Cow position: | chr11:10851142-10851326 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 56, 76 |
| Conread position: | 353-540 |
| Cow position: | chr11:18920569-18920385 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 56, 113 |
| Conread position: | 353-540 |
| Cow position: | chr11:19099457-19099272 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 144 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 56, 153 |
| Conread position: | 353-540 |
| Cow position: | chr11:23883375-23883560 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 56, 161 |
| Conread position: | 353-540 |
| Cow position: | chr11:33601611-33601426 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 56, 153 |
| Conread position: | 353-540 |
| Cow position: | chr11:38832451-38832266 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 56, 153 |
| Conread position: | 353-540 |
| Cow position: | chr11:44154055-44153870 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 141 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 56, 72 |
| Conread position: | 353-540 |
| Cow position: | chr11:56463390-56463575 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 56, 154 |
| Conread position: | 353-540 |
| Cow position: | chr11:67295979-67295794 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 56, 153 |
| Conread position: | 353-540 |
| Cow position: | chr11:70030447-70030632 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 145 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 56, 71 |
| Conread position: | 353-540 |
| Cow position: | chr11:85390834-85390649 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 56, 153 |
| Conread position: | 353-541 |
| Cow position: | chr11:3238329-3238516 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 23, 154 |
| Conread position: | 353-542 |
| Cow position: | chr11:30057234-30057414 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 158, 60 |
| Conread position: | 353-542 |
| Cow position: | chr11:73513344-73513156 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 153 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 56, 84 |
| Conread position: | 353-544 |
| Cow position: | chr11:21728992-21728803 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 57, 27 |
| Conread position: | 353-544 |
| Cow position: | chr11:28394098-28394289 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 56, 126 |
| Conread position: | 353-544 |
| Cow position: | chr11:48428169-48428357 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 56, 169 |
| Conread position: | 353-544 |
| Cow position: | chr11:59871843-59872028 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 151 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 353-544 |
| Cow position: | chr11:63167493-63167303 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 75, 62 |
| Conread position: | 353-544 |
| Cow position: | chr11:64047414-64047610 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 151 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 354-540 |
| Cow position: | chr11:28381700-28381879 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 134 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 55, 72 |
| Conread position: | 355-546 |
| Cow position: | chr11:12111957-12112149 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 150 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 56, 42 |
| Conread position: | 356-510 |
| Cow position: | chr11:41098374-41098222 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 112 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 356-514 |
| Cow position: | chr11:3263854-3264013 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 120 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 356-517 |
| Cow position: | chr11:38842657-38842812 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 123 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 25, 58 |
| Conread position: | 356-517 |
| Cow position: | chr11:51477667-51477827 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 356-518 |
| Cow position: | chr11:77034061-77033899 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 53, 150 |
| Conread position: | 356-521 |
| Cow position: | chr11:34608969-34609136 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 121 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 356-540 |
| Cow position: | chr11:35738313-35738131 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 139 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 53, 150 |
| Conread position: | 356-540 |
| Cow position: | chr11:46781038-46780857 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 149, 0 |
| Conread position: | 356-540 |
| Cow position: | chr11:58139725-58139907 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 140 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 53, 150 |
| Conread position: | 356-543 |
| Cow position: | chr11:45632927-45632740 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 152 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 53, 166 |
| Conread position: | 356-544 |
| Cow position: | chr11:69403192-69403004 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 53, 166 |
| Conread position: | 356-544 |
| Cow position: | chr11:84774196-84774380 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 145 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 62, 155 |
| Conread position: | 357-515 |
| Cow position: | chr11:44937905-44938066 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 123 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 357-544 |
| Cow position: | chr11:8844211-8844394 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 152 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 52, 154 |
| Conread position: | 358-544 |
| Cow position: | chr11:67746445-67746629 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 51, 173 |
| Conread position: | 359-542 |
| Cow position: | chr11:53280366-53280184 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 146 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 50, 9 |
| Conread position: | 361-542 |
| Cow position: | chr11:45651887-45651709 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 51, 79 |
| Conread position: | 361-544 |
| Cow position: | chr11:52298127-52297944 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 146 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 55, 161 |
| Conread position: | 362-514 |
| Cow position: | chr11:53855573-53855720 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 113 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 364-511 |
| Cow position: | chr11:31892981-31893127 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 110 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 364-548 |
| Cow position: | chr11:76767457-76767633 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 132 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 365-551 |
| Cow position: | chr11:43645017-43644836 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 139, 160 |
| Conread position: | 367-511 |
| Cow position: | chr11:32108812-32108953 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 113 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 367-544 |
| Cow position: | chr11:31236361-31236186 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 141 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 39, 84 |
| Conread position: | 368-544 |
| Cow position: | chr11:8829742-8829567 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 45, 153 |
| Conread position: | 371-544 |
| Cow position: | chr11:4060907-4060736 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 132 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 38, 140 |
| Conread position: | 371-544 |
| Cow position: | chr11:48168035-48167864 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 128 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 38, 135 |
| Conread position: | 375-544 |
| Cow position: | chr11:42372855-42373019 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 128 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 40, 19 |
| Conread position: | 382-540 |
| Cow position: | chr11:48648813-48648967 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 128, 0 |
| Conread position: | 386-518 |
| Cow position: | chr11:66944148-66944016 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 101 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 23, 125 |
| Conread position: | 386-540 |
| Cow position: | chr11:72313652-72313804 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 23, 120 |
| Conread position: | 387-519 |
| Cow position: | chr11:42358254-42358387 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 115 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 26, 46 |
| Conread position: | 391-544 |
| Cow position: | chr11:44644392-44644241 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 18, 120 |
| Conread position: | 394-544 |
| Cow position: | chr11:24601069-24601218 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 123 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 20, 127 |
| Conread position: | 395-544 |
| Cow position: | chr11:75206098-75206248 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 109, 43 |
| Conread position: | 396-536 |
| Cow position: | chr11:14469570-14469710 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 114 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 13, 25 |
| Conread position: | 399-536 |
| Cow position: | chr11:18389755-18389615 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 111 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 400-533 |
| Cow position: | chr11:17037459-17037330 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 105 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 418-544 |
| Cow position: | chr11:6734093-6733966 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 98 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 88, 0 |
Show alignments to all cow chromosomes.