Cow genome map
| Conread name: | LyN1-MLN01H100041 |
| Conread position: | 318-517 |
| Cow position: | chr21:10239932-10239732 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 112 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 350-518 |
| Cow position: | chr21:42558262-42558430 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 128 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 59, 161 |
| Conread position: | 351-540 |
| Cow position: | chr21:28915486-28915300 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 146 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 58, 21 |
| Conread position: | 353-514 |
| Cow position: | chr21:13749649-13749812 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 117 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 353-517 |
| Cow position: | chr21:5020637-5020797 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 130 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 56, 100 |
| Conread position: | 353-517 |
| Cow position: | chr21:17721072-17721234 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 353-517 |
| Cow position: | chr21:36534717-36534553 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 56, 153 |
| Conread position: | 353-518 |
| Cow position: | chr21:27608211-27608046 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 131 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 56, 153 |
| Conread position: | 353-518 |
| Cow position: | chr21:30565236-30565401 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 129 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 56, 153 |
| Conread position: | 353-518 |
| Cow position: | chr21:30595599-30595434 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 134 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 56, 153 |
| Conread position: | 353-518 |
| Cow position: | chr21:39700942-39700777 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 119 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 56, 153 |
| Conread position: | 353-518 |
| Cow position: | chr21:48234825-48234662 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 134 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 155, 57 |
| Conread position: | 353-519 |
| Cow position: | chr21:20263185-20263018 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 137 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 353-519 |
| Cow position: | chr21:31974628-31974792 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 117 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 353-520 |
| Cow position: | chr21:13111631-13111463 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 133 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 353-536 |
| Cow position: | chr21:10570778-10570959 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 136 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 56, 153 |
| Conread position: | 353-538 |
| Cow position: | chr21:43403947-43403764 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 141 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 56, 169 |
| Conread position: | 353-540 |
| Cow position: | chr21:149638-149823 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 56, 161 |
| Conread position: | 353-540 |
| Cow position: | chr21:1196029-1196213 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 142 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 56, 100 |
| Conread position: | 353-540 |
| Cow position: | chr21:3782264-3782448 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 134 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 56, 69 |
| Conread position: | 353-540 |
| Cow position: | chr21:4812853-4812668 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 56, 156 |
| Conread position: | 353-540 |
| Cow position: | chr21:10853756-10853941 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 56, 153 |
| Conread position: | 353-540 |
| Cow position: | chr21:17144179-17144364 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 56, 153 |
| Conread position: | 353-540 |
| Cow position: | chr21:27066108-27065923 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 56, 153 |
| Conread position: | 353-540 |
| Cow position: | chr21:33257047-33257232 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 56, 153 |
| Conread position: | 353-540 |
| Cow position: | chr21:44762190-44762008 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 141 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 353-540 |
| Cow position: | chr21:47648834-47649017 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 140 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 24, 45 |
| Conread position: | 353-542 |
| Cow position: | chr21:3766279-3766089 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 56, 70 |
| Conread position: | 353-544 |
| Cow position: | chr21:12802621-12802426 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 158 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 98, 59 |
| Conread position: | 353-544 |
| Cow position: | chr21:23783913-23783724 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 66, 158 |
| Conread position: | 353-544 |
| Cow position: | chr21:28908648-28908461 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 148 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 56, 71 |
| Conread position: | 353-544 |
| Cow position: | chr21:33983784-33983593 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 162 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 169 |
| Conread position: | 353-544 |
| Cow position: | chr21:44219171-44219357 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 139 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 60, 19 |
| Conread position: | 353-544 |
| Cow position: | chr21:46974242-46974054 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 155 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 60, 109 |
| Conread position: | 353-544 |
| Cow position: | chr21:47360680-47360491 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 60, 15 |
| Conread position: | 354-511 |
| Cow position: | chr21:13199423-13199575 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 115 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 354-533 |
| Cow position: | chr21:31275834-31276011 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 149 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 59, 157 |
| Conread position: | 355-519 |
| Cow position: | chr21:18829389-18829228 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 54, 27 |
| Conread position: | 356-541 |
| Cow position: | chr21:6965978-6965795 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 53, 153 |
| Conread position: | 356-541 |
| Cow position: | chr21:13735667-13735485 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 135 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 149, 0 |
| Conread position: | 356-544 |
| Cow position: | chr21:28028124-28028312 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 162 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 106 |
| Conread position: | 356-546 |
| Cow position: | chr21:37298634-37298823 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 157 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 53, 110 |
| Conread position: | 357-544 |
| Cow position: | chr21:2419692-2419877 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 146 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 57, 15 |
| Conread position: | 358-514 |
| Cow position: | chr21:23448745-23448902 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 115 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 358-544 |
| Cow position: | chr21:31512775-31512591 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 142 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 51, 148 |
| Conread position: | 360-540 |
| Cow position: | chr21:3253132-3253309 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 53, 115 |
| Conread position: | 361-519 |
| Cow position: | chr21:25992157-25991995 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 117 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 361-520 |
| Cow position: | chr21:5596289-5596450 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 119 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 361-531 |
| Cow position: | chr21:46968227-46968058 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 122 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 61, 72 |
| Conread position: | 361-543 |
| Cow position: | chr21:21412090-21411918 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 169, 53 |
| Conread position: | 362-544 |
| Cow position: | chr21:28441943-28442131 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 146, 0 |
| Conread position: | 363-542 |
| Cow position: | chr21:4191795-4191972 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 130 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 46, 70 |
| Conread position: | 364-511 |
| Cow position: | chr21:21000876-21000731 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 113 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 73, 90 |
| Conread position: | 367-544 |
| Cow position: | chr21:24697662-24697837 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 42, 144 |
| Conread position: | 369-536 |
| Cow position: | chr21:8890388-8890553 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 126 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 40, 142 |
| Conread position: | 372-519 |
| Cow position: | chr21:8419626-8419770 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 119 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 41, 101 |
| Conread position: | 372-544 |
| Cow position: | chr21:22855408-22855577 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 144 |
| Alignm E-value: | 8.99998e-41 |
| Alignm gaps (pig, cow): | 41, 139 |
| Conread position: | 372-544 |
| Cow position: | chr21:39764034-39764204 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 129 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 37, 20 |
| Conread position: | 376-544 |
| Cow position: | chr21:38899965-38900125 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 136 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 156, 36 |
| Conread position: | 376-547 |
| Cow position: | chr21:28988797-28988966 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 123 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 33, 135 |
| Conread position: | 385-521 |
| Cow position: | chr21:25813892-25813755 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 103 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 406-511 |
| Cow position: | chr21:13678176-13678071 (view UCSC Genome Browser custom track) |
| Alignm length: | 106 |
| Alignm identity: | 87 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 410-514 |
| Cow position: | chr21:29015917-29015813 (view UCSC Genome Browser custom track) |
| Alignm length: | 105 |
| Alignm identity: | 87 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.