Cow genome map
| Conread name: | LyN1-MLN01H100041 |
| Conread position: | 347-540 |
| Cow position: | chr28:6959583-6959772 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 62, 9 |
| Conread position: | 352-523 |
| Cow position: | chr28:8717595-8717423 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 133 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 57, 7 |
| Conread position: | 352-540 |
| Cow position: | chr28:5748348-5748163 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 57, 7 |
| Conread position: | 353-503 |
| Cow position: | chr28:18516788-18516636 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 118 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 353-507 |
| Cow position: | chr28:23675171-23675326 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 121 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 353-514 |
| Cow position: | chr28:19193877-19194040 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 128 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 353-517 |
| Cow position: | chr28:10473316-10473480 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 125 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 56, 153 |
| Conread position: | 353-517 |
| Cow position: | chr28:24997556-24997385 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 134 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 353-517 |
| Cow position: | chr28:32786069-32785912 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 123 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 56, 98 |
| Conread position: | 353-518 |
| Cow position: | chr28:3188659-3188494 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 128 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 56, 152 |
| Conread position: | 353-518 |
| Cow position: | chr28:12081569-12081406 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 123 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 56, 72 |
| Conread position: | 353-518 |
| Cow position: | chr28:12156037-12156202 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 56, 153 |
| Conread position: | 353-519 |
| Cow position: | chr28:10578738-10578571 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 128 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 353-519 |
| Cow position: | chr28:29198835-29199002 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 353-540 |
| Cow position: | chr28:5211479-5211664 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 143 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 56, 156 |
| Conread position: | 353-540 |
| Cow position: | chr28:7005385-7005571 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 56, 154 |
| Conread position: | 353-540 |
| Cow position: | chr28:17391791-17391976 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 139 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 56, 161 |
| Conread position: | 353-540 |
| Cow position: | chr28:17663591-17663406 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 141 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 56, 161 |
| Conread position: | 353-540 |
| Cow position: | chr28:22254842-22254659 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 142 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 60, 98 |
| Conread position: | 353-540 |
| Cow position: | chr28:26419643-26419458 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 143 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 57, 152 |
| Conread position: | 353-540 |
| Cow position: | chr28:29823543-29823728 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 140 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 61, 153 |
| Conread position: | 353-540 |
| Cow position: | chr28:30098234-30098419 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 143 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 56, 153 |
| Conread position: | 353-540 |
| Cow position: | chr28:34597602-34597788 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 143 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 56, 154 |
| Conread position: | 353-541 |
| Cow position: | chr28:9182227-9182413 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 143 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 56, 153 |
| Conread position: | 353-544 |
| Cow position: | chr28:958218-958405 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 146 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 84, 55 |
| Conread position: | 353-544 |
| Cow position: | chr28:11787597-11787412 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 60, 96 |
| Conread position: | 353-544 |
| Cow position: | chr28:12429563-12429753 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 147 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 60, 113 |
| Conread position: | 353-544 |
| Cow position: | chr28:13606787-13606978 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 155 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 53, 18 |
| Conread position: | 353-544 |
| Cow position: | chr28:17686283-17686089 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 148 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 44, 190 |
| Conread position: | 353-544 |
| Cow position: | chr28:30328568-30328383 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 158 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 355-507 |
| Cow position: | chr28:9420239-9420087 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 113 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 54, 37 |
| Conread position: | 355-551 |
| Cow position: | chr28:28723583-28723776 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 54, 151 |
| Conread position: | 356-517 |
| Cow position: | chr28:17131775-17131614 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 117 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 59, 150 |
| Conread position: | 356-518 |
| Cow position: | chr28:24302004-24301841 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 115 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 356-519 |
| Cow position: | chr28:1024972-1024808 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 132 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 356-544 |
| Cow position: | chr28:615347-615528 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 138 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 53, 11 |
| Conread position: | 356-544 |
| Cow position: | chr28:24644821-24645007 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 152 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 53, 153 |
| Conread position: | 356-546 |
| Cow position: | chr28:5940847-5941035 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 53, 150 |
| Conread position: | 356-547 |
| Cow position: | chr28:30966564-30966755 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 137 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 53, 61 |
| Conread position: | 358-540 |
| Cow position: | chr28:29036289-29036109 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 51, 148 |
| Conread position: | 358-544 |
| Cow position: | chr28:20964512-20964328 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 145 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 51, 22 |
| Conread position: | 359-544 |
| Cow position: | chr28:7981595-7981416 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 146 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 359-544 |
| Cow position: | chr28:17602677-17602484 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 143 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 361-518 |
| Cow position: | chr28:21855837-21855678 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 115 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 361-519 |
| Cow position: | chr28:29473357-29473516 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 117 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 361-523 |
| Cow position: | chr28:18140348-18140184 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 120 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 362-517 |
| Cow position: | chr28:4457700-4457852 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 121 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 34, 51 |
| Conread position: | 364-568 |
| Cow position: | chr28:23467277-23467474 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 146 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 16, 147 |
| Conread position: | 368-503 |
| Cow position: | chr28:21767931-21767795 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 107 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 369-508 |
| Cow position: | chr28:30369366-30369505 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 110 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 46, 64 |
| Conread position: | 381-544 |
| Cow position: | chr28:10643157-10642997 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 127 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 28, 130 |
| Conread position: | 382-518 |
| Cow position: | chr28:23773971-23773835 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 106 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 27, 127 |
| Conread position: | 386-544 |
| Cow position: | chr28:13889604-13889448 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 23, 128 |
| Conread position: | 392-535 |
| Cow position: | chr28:1550239-1550378 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 112 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 23, 74 |
| Conread position: | 392-540 |
| Cow position: | chr28:24603323-24603469 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 111 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 17, 122 |
| Conread position: | 392-543 |
| Cow position: | chr28:7373354-7373202 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 121 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 116, 16 |
| Conread position: | 393-541 |
| Cow position: | chr28:10562802-10562948 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 110 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 16, 113 |
| Conread position: | 396-540 |
| Cow position: | chr28:30532593-30532452 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 111 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 13, 110 |
Show alignments to all cow chromosomes.