Cow genome map
| Conread name: | Lym1-jns23_A07.f |
| Conread position: | 32-502 |
| Cow position: | chr12:11539109-11539582 (view UCSC Genome Browser custom track) |
| Alignm length: | 497 |
| Alignm identity: | 336 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 57, 21 |
| Conread position: | 74-282 |
| Cow position: | chr12:10894932-10894716 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 155 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 17, 72 |
| Conread position: | 97-350 |
| Cow position: | chr12:5797581-5797826 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 169 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 179, 24 |
| Conread position: | 97-354 |
| Cow position: | chr12:4656609-4656859 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 177 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 134, 51 |
| Conread position: | 124-359 |
| Cow position: | chr12:24755089-24755315 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 160 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 152, 13 |
| Conread position: | 127-381 |
| Cow position: | chr12:10028838-10028579 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 189 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 29, 13 |
| Conread position: | 130-358 |
| Cow position: | chr12:45555479-45555708 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 27, 19 |
| Conread position: | 133-359 |
| Cow position: | chr12:31198702-31198477 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 160 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 44, 99 |
| Conread position: | 141-383 |
| Cow position: | chr12:4518263-4518512 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 169 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 69, 19 |
| Conread position: | 142-373 |
| Cow position: | chr12:41979369-41979604 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 166 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 49, 173 |
| Conread position: | 145-502 |
| Cow position: | chr12:25456043-25455668 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 252 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 49, 17 |
| Conread position: | 155-356 |
| Cow position: | chr12:32400115-32399908 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 146 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 39, 146 |
| Conread position: | 155-502 |
| Cow position: | chr12:18769157-18769519 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 251 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 39, 297 |
| Conread position: | 155-502 |
| Cow position: | chr12:30688258-30687901 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 246 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 51, 81 |
| Conread position: | 156-359 |
| Cow position: | chr12:36049317-36049107 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 150 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 157-502 |
| Cow position: | chr12:31218367-31218028 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 250 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 18, 25 |
| Conread position: | 160-503 |
| Cow position: | chr12:12939012-12939363 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 77 |
| Conread position: | 162-420 |
| Cow position: | chr12:27562929-27563186 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 105, 9 |
| Conread position: | 164-367 |
| Cow position: | chr12:794459-794251 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 142 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 188-513 |
| Cow position: | chr12:6210275-6210590 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 219 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 29, 195 |
| Conread position: | 190-357 |
| Cow position: | chr12:12982989-12983159 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 124 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 24, 107 |
| Conread position: | 190-359 |
| Cow position: | chr12:31925529-31925359 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 118 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 87, 0 |
| Conread position: | 190-364 |
| Cow position: | chr12:7131721-7131889 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 86, 24 |
| Conread position: | 190-376 |
| Cow position: | chr12:44013957-44014148 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 133 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 86, 0 |
| Conread position: | 202-359 |
| Cow position: | chr12:20795774-20795616 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 115 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 203-371 |
| Cow position: | chr12:36338869-36338700 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 122 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 73, 30 |
| Conread position: | 203-371 |
| Cow position: | chr12:36954511-36954678 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 121 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 74, 17 |
| Conread position: | 203-379 |
| Cow position: | chr12:7109054-7108877 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 125 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 204-373 |
| Cow position: | chr12:46143686-46143516 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 120 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 208-373 |
| Cow position: | chr12:15034110-15034274 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 68, 24 |
| Conread position: | 208-425 |
| Cow position: | chr12:1284597-1284816 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 9, 48 |
| Conread position: | 209-503 |
| Cow position: | chr12:25619517-25619817 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 129 |
| Conread position: | 217-359 |
| Cow position: | chr12:25550429-25550572 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 113 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 50, 122 |
| Conread position: | 221-371 |
| Cow position: | chr12:4866662-4866513 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 110 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 56, 115 |
| Conread position: | 221-371 |
| Cow position: | chr12:36450641-36450491 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 115 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 55, 13 |
| Conread position: | 221-401 |
| Cow position: | chr12:21922284-21922102 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 130 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 22, 126 |
| Conread position: | 221-502 |
| Cow position: | chr12:4191020-4190722 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 42 |
| Conread position: | 222-353 |
| Cow position: | chr12:7055441-7055573 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 100 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 232-399 |
| Cow position: | chr12:38647895-38647732 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 246-509 |
| Cow position: | chr12:37270723-37270465 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 194 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 31, 88 |
| Conread position: | 257-502 |
| Cow position: | chr12:17708528-17708273 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 184 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 276-502 |
| Cow position: | chr12:28582700-28582922 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 162, 95 |
Show alignments to all cow chromosomes.