Cow genome map
| Conread name: | Lym1-jns23_A07.f |
| Conread position: | 1-358 |
| Cow position: | chr14:17651924-17651551 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 263 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 31, 264 |
| Conread position: | 1-502 |
| Cow position: | chr14:6456638-6456134 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 124 |
| Conread position: | 82-386 |
| Cow position: | chr14:47646539-47646240 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 215 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 48, 39 |
| Conread position: | 86-501 |
| Cow position: | chr14:26406752-26406335 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 285 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 130, 62 |
| Conread position: | 97-359 |
| Cow position: | chr14:35018724-35018460 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 172 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 13, 24 |
| Conread position: | 109-358 |
| Cow position: | chr14:25362389-25362642 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 181 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 39, 8 |
| Conread position: | 113-359 |
| Cow position: | chr14:18448965-18448711 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 172 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 113-407 |
| Cow position: | chr14:3588394-3588108 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 211 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 81, 24 |
| Conread position: | 127-359 |
| Cow position: | chr14:45584129-45583904 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 33, 80 |
| Conread position: | 127-503 |
| Cow position: | chr14:14307852-14308207 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 253 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 9, 25 |
| Conread position: | 127-503 |
| Cow position: | chr14:40737607-40737244 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 260 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 37, 14 |
| Conread position: | 128-379 |
| Cow position: | chr14:15514070-15514333 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 180 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 17, 240 |
| Conread position: | 128-502 |
| Cow position: | chr14:23526996-23527375 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 259 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 6, 47 |
| Conread position: | 130-503 |
| Cow position: | chr14:8488250-8488604 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 270 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 76, 25 |
| Conread position: | 133-367 |
| Cow position: | chr14:10906781-10907021 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 165 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 70, 183 |
| Conread position: | 139-391 |
| Cow position: | chr14:24837881-24837635 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 188 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 128, 51 |
| Conread position: | 142-376 |
| Cow position: | chr14:27578713-27578476 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 9, 19 |
| Conread position: | 142-381 |
| Cow position: | chr14:37333766-37334009 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 69, 10 |
| Conread position: | 142-492 |
| Cow position: | chr14:45292845-45292484 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 54 |
| Conread position: | 144-358 |
| Cow position: | chr14:31888625-31888411 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 150 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 7, 17 |
| Conread position: | 144-358 |
| Cow position: | chr14:35700503-35700726 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 153 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 154-365 |
| Cow position: | chr14:37624398-37624186 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 40, 48 |
| Conread position: | 155-359 |
| Cow position: | chr14:12488611-12488406 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 34, 26 |
| Conread position: | 155-367 |
| Cow position: | chr14:21018200-21018415 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 152 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 56, 185 |
| Conread position: | 155-503 |
| Cow position: | chr14:34163784-34163445 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 241 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 72, 39 |
| Conread position: | 155-527 |
| Cow position: | chr14:31399665-31400024 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 259 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 64, 22 |
| Conread position: | 156-348 |
| Cow position: | chr14:3437082-3437275 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 140 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 38, 73 |
| Conread position: | 156-358 |
| Cow position: | chr14:39807369-39807164 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 151 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 71, 39 |
| Conread position: | 156-364 |
| Cow position: | chr14:46782303-46782094 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 146 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 38, 124 |
| Conread position: | 156-373 |
| Cow position: | chr14:48427162-48427386 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 152 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 38, 42 |
| Conread position: | 158-372 |
| Cow position: | chr14:27848291-27848509 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 150 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 54, 32 |
| Conread position: | 162-357 |
| Cow position: | chr14:19624189-19624384 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 43, 9 |
| Conread position: | 162-480 |
| Cow position: | chr14:8541111-8540804 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 208 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 182-401 |
| Cow position: | chr14:12559369-12559146 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 85, 47 |
| Conread position: | 184-401 |
| Cow position: | chr14:12856722-12856934 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 92, 16 |
| Conread position: | 185-469 |
| Cow position: | chr14:8763376-8763665 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 203 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 30, 12 |
| Conread position: | 186-362 |
| Cow position: | chr14:18984781-18984605 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 132 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 57, 34 |
| Conread position: | 186-502 |
| Cow position: | chr14:44878668-44878345 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 225 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 8, 66 |
| Conread position: | 187-353 |
| Cow position: | chr14:8257059-8256890 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 125 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 84, 33 |
| Conread position: | 188-503 |
| Cow position: | chr14:36709240-36709593 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 242 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 6, 156 |
| Conread position: | 190-402 |
| Cow position: | chr14:33209228-33209020 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 157 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 87, 30 |
| Conread position: | 190-503 |
| Cow position: | chr14:43031932-43032251 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 122 |
| Conread position: | 191-401 |
| Cow position: | chr14:33580734-33580936 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 151 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 193-513 |
| Cow position: | chr14:35936383-35936061 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 232 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 82, 11 |
| Conread position: | 197-379 |
| Cow position: | chr14:23179132-23179313 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 127 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 7, 141 |
| Conread position: | 200-381 |
| Cow position: | chr14:44253032-44253212 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 74, 35 |
| Conread position: | 201-377 |
| Cow position: | chr14:44482929-44482751 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 124 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 201-402 |
| Cow position: | chr14:14280559-14280756 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 76, 19 |
| Conread position: | 203-415 |
| Cow position: | chr14:14187473-14187690 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 161 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 19, 33 |
| Conread position: | 204-373 |
| Cow position: | chr14:13997573-13997408 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 131 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 131, 16 |
| Conread position: | 204-503 |
| Cow position: | chr14:19850889-19850576 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 211 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 154, 36 |
| Conread position: | 208-359 |
| Cow position: | chr14:35360345-35360495 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 119 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 65, 12 |
| Conread position: | 208-359 |
| Cow position: | chr14:39616770-39616613 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 116 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 208-359 |
| Cow position: | chr14:42776334-42776180 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 113 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 208-390 |
| Cow position: | chr14:25231503-25231323 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 131 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 9, 29 |
| Conread position: | 217-529 |
| Cow position: | chr14:28605326-28605640 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 227 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 58, 116 |
| Conread position: | 221-374 |
| Cow position: | chr14:39821320-39821477 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 118 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 46, 121 |
| Conread position: | 221-381 |
| Cow position: | chr14:25385732-25385574 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 116 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 55, 38 |
| Conread position: | 221-409 |
| Cow position: | chr14:41960590-41960778 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 137 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 38, 98 |
| Conread position: | 221-493 |
| Cow position: | chr14:47974141-47974397 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 188 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 253, 7 |
| Conread position: | 221-503 |
| Cow position: | chr14:41128049-41128333 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 217 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 117 |
| Conread position: | 222-452 |
| Cow position: | chr14:16834492-16834725 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 158 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 161, 54 |
| Conread position: | 223-393 |
| Cow position: | chr14:19957752-19957581 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 129 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 228-373 |
| Cow position: | chr14:28378531-28378674 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 108 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 237-379 |
| Cow position: | chr14:38851800-38851940 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 111 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 39, 45 |
| Conread position: | 237-415 |
| Cow position: | chr14:48412708-48412522 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 251-400 |
| Cow position: | chr14:44861058-44860904 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 258-503 |
| Cow position: | chr14:20795987-20796229 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 167 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 18, 69 |
| Conread position: | 261-470 |
| Cow position: | chr14:27104291-27104498 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 154 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 15, 151 |
| Conread position: | 261-488 |
| Cow position: | chr14:26108838-26109085 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 177 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 100, 222 |
| Conread position: | 275-496 |
| Cow position: | chr14:31373336-31373110 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 52, 71 |
Show alignments to all cow chromosomes.