Cow genome map
| Conread name: | Lym1-jns23_A07.f |
| Conread position: | 1-283 |
| Cow position: | chr15:29252309-29252014 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 211 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 32, 54 |
| Conread position: | 1-311 |
| Cow position: | chr15:46035836-46036169 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 235 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 72, 27 |
| Conread position: | 1-359 |
| Cow position: | chr15:53481433-53481786 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 240 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 28, 48 |
| Conread position: | 1-365 |
| Cow position: | chr15:22160549-22160927 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 6 |
| Conread position: | 3-359 |
| Cow position: | chr15:40190141-40189775 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 261 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 31, 24 |
| Conread position: | 97-413 |
| Cow position: | chr15:11658497-11658169 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 214 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 13, 283 |
| Conread position: | 109-358 |
| Cow position: | chr15:37632792-37632534 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 180 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 25, 8 |
| Conread position: | 114-374 |
| Cow position: | chr15:4373568-4373832 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 180 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 10, 18 |
| Conread position: | 121-472 |
| Cow position: | chr15:26754999-26754666 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 247 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 29, 16 |
| Conread position: | 123-393 |
| Cow position: | chr15:23791567-23791833 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 180 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 35, 14 |
| Conread position: | 125-358 |
| Cow position: | chr15:9178104-9177871 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 165 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 95, 76 |
| Conread position: | 130-375 |
| Cow position: | chr15:34176350-34176104 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 176 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 23, 53 |
| Conread position: | 140-359 |
| Cow position: | chr15:22713710-22713488 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 54, 79 |
| Conread position: | 141-367 |
| Cow position: | chr15:31855401-31855170 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 15, 168 |
| Conread position: | 142-357 |
| Cow position: | chr15:44209690-44209911 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 157 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 64, 9 |
| Conread position: | 142-359 |
| Cow position: | chr15:15215141-15215362 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 157 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 144-502 |
| Cow position: | chr15:43248648-43248289 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 243 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 62, 196 |
| Conread position: | 153-503 |
| Cow position: | chr15:20347380-20347753 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 255 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 55, 161 |
| Conread position: | 154-367 |
| Cow position: | chr15:24285114-24285336 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 155-379 |
| Cow position: | chr15:6282797-6282576 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 154 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 51, 133 |
| Conread position: | 155-401 |
| Cow position: | chr15:6491456-6491205 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 175 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 22, 36 |
| Conread position: | 155-502 |
| Cow position: | chr15:33680787-33681120 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 241 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 51, 59 |
| Conread position: | 155-503 |
| Cow position: | chr15:40724568-40724914 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 258 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 48, 155 |
| Conread position: | 156-502 |
| Cow position: | chr15:21802030-21801685 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 120, 64 |
| Conread position: | 157-501 |
| Cow position: | chr15:53118458-53118796 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 228 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 49, 182 |
| Conread position: | 161-400 |
| Cow position: | chr15:14020622-14020854 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 173 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 116, 10 |
| Conread position: | 162-401 |
| Cow position: | chr15:4535061-4535291 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 176 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 115, 9 |
| Conread position: | 162-472 |
| Cow position: | chr15:23768114-23767797 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 223 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 199, 9 |
| Conread position: | 162-516 |
| Cow position: | chr15:20482695-20482316 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 263 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 56, 9 |
| Conread position: | 167-370 |
| Cow position: | chr15:35041728-35041517 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 27, 203 |
| Conread position: | 167-375 |
| Cow position: | chr15:25825707-25825502 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 147 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 109, 28 |
| Conread position: | 167-441 |
| Cow position: | chr15:44252510-44252789 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 190 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 36, 169 |
| Conread position: | 168-371 |
| Cow position: | chr15:19781692-19781888 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 26, 47 |
| Conread position: | 182-367 |
| Cow position: | chr15:38322993-38323180 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 137 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 60, 13 |
| Conread position: | 182-377 |
| Cow position: | chr15:13285202-13285394 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 133 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 184-359 |
| Cow position: | chr15:3572534-3572362 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 125 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 35, 20 |
| Conread position: | 185-502 |
| Cow position: | chr15:19725570-19725257 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 230 |
| Alignm E-value: | 8.99634e-43 |
| Alignm gaps (pig, cow): | 93, 16 |
| Conread position: | 185-503 |
| Cow position: | chr15:1297907-1298230 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 219 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 92, 14 |
| Conread position: | 185-503 |
| Cow position: | chr15:45678408-45678072 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 235 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 81, 36 |
| Conread position: | 190-502 |
| Cow position: | chr15:9062426-9062113 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 216 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 74, 210 |
| Conread position: | 190-502 |
| Cow position: | chr15:24128821-24129145 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 218 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 87, 0 |
| Conread position: | 191-369 |
| Cow position: | chr15:24977022-24976839 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 129 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 193-383 |
| Cow position: | chr15:50964434-50964632 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 142 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 203-358 |
| Cow position: | chr15:22136869-22137024 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 116 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 74, 17 |
| Conread position: | 203-373 |
| Cow position: | chr15:19186432-19186259 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 125 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 64, 17 |
| Conread position: | 203-403 |
| Cow position: | chr15:38883339-38883541 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 150 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 72, 16 |
| Conread position: | 203-468 |
| Cow position: | chr15:17100523-17100261 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 200 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 216, 17 |
| Conread position: | 203-503 |
| Cow position: | chr15:11011417-11011117 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 205 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 194, 16 |
| Conread position: | 203-503 |
| Cow position: | chr15:31085723-31086014 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 209 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 74, 18 |
| Conread position: | 204-387 |
| Cow position: | chr15:45322974-45323153 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 130 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 73, 15 |
| Conread position: | 208-358 |
| Cow position: | chr15:13669714-13669563 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 111 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 15, 129 |
| Conread position: | 208-502 |
| Cow position: | chr15:32325509-32325783 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 206 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 10, 21 |
| Conread position: | 212-365 |
| Cow position: | chr15:8630090-8629937 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 115 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 64, 14 |
| Conread position: | 216-394 |
| Cow position: | chr15:8230378-8230203 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 69, 27 |
| Conread position: | 217-359 |
| Cow position: | chr15:7980349-7980492 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 108 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 217-371 |
| Cow position: | chr15:22607008-22607161 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 116 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 59, 29 |
| Conread position: | 217-379 |
| Cow position: | chr15:34255548-34255386 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 122 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 59, 132 |
| Conread position: | 217-469 |
| Cow position: | chr15:10487701-10487449 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 177 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 42, 183 |
| Conread position: | 218-358 |
| Cow position: | chr15:21836890-21837030 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 106 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 218-369 |
| Cow position: | chr15:17683226-17683380 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 116 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 49, 99 |
| Conread position: | 218-502 |
| Cow position: | chr15:38732429-38732146 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 205 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 59, 14 |
| Conread position: | 221-357 |
| Cow position: | chr15:15865974-15865832 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 108 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 221-359 |
| Cow position: | chr15:27732601-27732740 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 104 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 221-377 |
| Cow position: | chr15:37985357-37985201 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 55, 116 |
| Conread position: | 221-401 |
| Cow position: | chr15:3539196-3539014 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 136 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 15, 67 |
| Conread position: | 221-472 |
| Cow position: | chr15:12316127-12316395 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 190 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 221-502 |
| Cow position: | chr15:14322860-14322584 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 197 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 56, 171 |
| Conread position: | 221-503 |
| Cow position: | chr15:9642637-9642912 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 202 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 46, 93 |
| Conread position: | 221-529 |
| Cow position: | chr15:46468402-46468711 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 210 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 54, 145 |
| Conread position: | 223-376 |
| Cow position: | chr15:5653936-5654094 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 115 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 228-373 |
| Cow position: | chr15:20459090-20458944 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 108 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 229-393 |
| Cow position: | chr15:19812857-19813026 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 236-511 |
| Cow position: | chr15:6657325-6657605 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 193 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 41, 80 |
| Conread position: | 247-381 |
| Cow position: | chr15:26734839-26734974 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 103 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 255-511 |
| Cow position: | chr15:14577663-14577933 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 186 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 22, 264 |
| Conread position: | 276-503 |
| Cow position: | chr15:49279714-49279935 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 164 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 137, 61 |
| Conread position: | 283-395 |
| Cow position: | chr15:286724-286836 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 90 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.