Cow genome map

Conread name: Lym1-jns23_A07.f

Conread position: 1-342
Cow position: chr16:46570915-46571281 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 255
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 72, 27

Conread position: 1-350
Cow position: chr16:11055607-11055256 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 255
Alignm E-value: 9e-32
Alignm gaps (pig, cow): 90, 32

Conread position: 1-500
Cow position: chr16:5446973-5446478 (view UCSC Genome Browser custom track)
Alignm length: 516
Alignm identity: 344
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 34, 54

Conread position: 2-359
Cow position: chr16:15471034-15470662 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 259
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 27, 55

Conread position: 2-409
Cow position: chr16:36212274-36212682 (view UCSC Genome Browser custom track)
Alignm length: 421
Alignm identity: 278
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 27, 18

Conread position: 10-373
Cow position: chr16:52585910-52586270 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 246
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 82, 19

Conread position: 33-338
Cow position: chr16:26973874-26974174 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 210
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 55, 20

Conread position: 97-424
Cow position: chr16:4499449-4499122 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 212
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 51, 20

Conread position: 109-489
Cow position: chr16:45799918-45799525 (view UCSC Genome Browser custom track)
Alignm length: 399
Alignm identity: 274
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 82, 150

Conread position: 120-358
Cow position: chr16:19152684-19152445 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 170
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 37, 20

Conread position: 125-377
Cow position: chr16:40272034-40271798 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 177
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 95, 24

Conread position: 128-359
Cow position: chr16:32384840-32385074 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 152
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 85, 0

Conread position: 130-359
Cow position: chr16:17867491-17867728 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 169
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 14, 0

Conread position: 130-401
Cow position: chr16:30572627-30572906 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 201
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 64, 15

Conread position: 130-503
Cow position: chr16:22868202-22868579 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 254
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 23, 33

Conread position: 131-358
Cow position: chr16:3918513-3918277 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 164
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 10, 135

Conread position: 133-359
Cow position: chr16:36930341-36930573 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 160
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 12, 104

Conread position: 133-373
Cow position: chr16:32132503-32132262 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 163
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 18, 164

Conread position: 133-502
Cow position: chr16:27005180-27004783 (view UCSC Genome Browser custom track)
Alignm length: 399
Alignm identity: 270
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 23, 9

Conread position: 141-359
Cow position: chr16:15677529-15677304 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 156
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 9, 27

Conread position: 143-367
Cow position: chr16:50417722-50417949 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 156
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 119, 13

Conread position: 144-359
Cow position: chr16:10857658-10857877 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 153
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 11, 5

Conread position: 154-359
Cow position: chr16:55047154-55047357 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 147
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 121, 28

Conread position: 155-356
Cow position: chr16:23990528-23990737 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 148
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 39, 0

Conread position: 155-373
Cow position: chr16:5243924-5243696 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 155
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 39, 0

Conread position: 155-373
Cow position: chr16:34210454-34210680 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 157
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 29, 0

Conread position: 155-376
Cow position: chr16:7639945-7639725 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 157
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 112, 19

Conread position: 155-377
Cow position: chr16:20633924-20634141 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 155
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 39, 170

Conread position: 155-378
Cow position: chr16:16548564-16548343 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 155
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 27, 96

Conread position: 155-387
Cow position: chr16:55586645-55586882 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 163
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 51, 0

Conread position: 155-389
Cow position: chr16:3628766-3628535 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 154
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 40, 0

Conread position: 155-502
Cow position: chr16:23025300-23024962 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 254
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 39, 189

Conread position: 156-359
Cow position: chr16:19632820-19633026 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 142
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 111, 65

Conread position: 160-359
Cow position: chr16:14799794-14799993 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 139
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 34, 178

Conread position: 160-389
Cow position: chr16:22786098-22786329 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 163
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 34, 175

Conread position: 163-375
Cow position: chr16:7426921-7427135 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 156
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 10, 20

Conread position: 163-387
Cow position: chr16:5636530-5636308 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 152
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 172, 56

Conread position: 167-359
Cow position: chr16:37442183-37442381 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 138
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 27, 0

Conread position: 167-372
Cow position: chr16:11620865-11621069 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 139
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 27, 54

Conread position: 167-502
Cow position: chr16:14242313-14241976 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 240
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 27, 56

Conread position: 167-516
Cow position: chr16:53613246-53612892 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 238
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 27, 178

Conread position: 178-470
Cow position: chr16:15443575-15443262 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 218
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 30, 19

Conread position: 182-359
Cow position: chr16:11449692-11449516 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 128
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 37, 13

Conread position: 182-425
Cow position: chr16:17745755-17745520 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 166
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 94, 21

Conread position: 184-377
Cow position: chr16:53086409-53086595 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 137
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 35, 0

Conread position: 184-502
Cow position: chr16:23747653-23747979 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 217
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 10, 63

Conread position: 185-373
Cow position: chr16:13043725-13043530 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 149
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 15, 161

Conread position: 185-375
Cow position: chr16:54100278-54100099 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 138
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 25, 43

Conread position: 186-395
Cow position: chr16:26373034-26373239 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 142
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 91, 18

Conread position: 187-359
Cow position: chr16:45157516-45157693 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 128
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 28, 155

Conread position: 188-393
Cow position: chr16:4979729-4979529 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 150
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 31, 66

Conread position: 189-503
Cow position: chr16:30515672-30515980 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 212
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 28, 44

Conread position: 190-406
Cow position: chr16:19445708-19445485 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 153
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 77, 24

Conread position: 193-359
Cow position: chr16:47780987-47780818 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 123
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 82, 10

Conread position: 193-501
Cow position: chr16:17606212-17605916 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 217
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 10, 138

Conread position: 201-482
Cow position: chr16:52218996-52218703 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 206
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 66, 13

Conread position: 203-359
Cow position: chr16:43804399-43804244 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 116
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 73, 16

Conread position: 203-381
Cow position: chr16:52889507-52889685 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 129
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 69, 9

Conread position: 208-357
Cow position: chr16:44667190-44667338 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 115
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 14, 57

Conread position: 208-359
Cow position: chr16:238166-238008 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 117
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 15, 0

Conread position: 208-359
Cow position: chr16:14754422-14754575 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 111
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 9, 0

Conread position: 208-369
Cow position: chr16:5477449-5477610 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 118
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 35, 30

Conread position: 208-401
Cow position: chr16:8366920-8367120 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 140
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 15, 0

Conread position: 208-482
Cow position: chr16:53891881-53892168 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 190
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 15, 0

Conread position: 208-502
Cow position: chr16:18693234-18693528 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 194
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 70, 18

Conread position: 208-502
Cow position: chr16:23681270-23680960 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 221
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 9, 60

Conread position: 216-371
Cow position: chr16:43275913-43275757 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 112
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 60, 0

Conread position: 217-373
Cow position: chr16:47341590-47341749 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 119
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 55, 9

Conread position: 217-375
Cow position: chr16:17297476-17297316 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 120
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 19, 122

Conread position: 217-503
Cow position: chr16:16566372-16566087 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 197
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 12, 37

Conread position: 218-359
Cow position: chr16:15320576-15320722 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 112
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 11, 105

Conread position: 218-407
Cow position: chr16:11153302-11153488 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 136
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 58, 49

Conread position: 221-367
Cow position: chr16:23038215-23038361 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 112
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 55, 116

Conread position: 221-379
Cow position: chr16:25606989-25606829 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 122
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 55, 0

Conread position: 221-385
Cow position: chr16:18427071-18426906 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 123
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 28, 117

Conread position: 221-401
Cow position: chr16:46434236-46434411 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 128
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 56, 24

Conread position: 221-407
Cow position: chr16:44898843-44899032 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 136
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 50, 100

Conread position: 221-483
Cow position: chr16:33405871-33406137 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 181
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 56, 163

Conread position: 221-503
Cow position: chr16:42177337-42177059 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 204
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 43, 98

Conread position: 222-502
Cow position: chr16:20025332-20025049 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 192
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 64, 143

Conread position: 222-502
Cow position: chr16:41752687-41752955 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 200
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 29, 169

Conread position: 236-400
Cow position: chr16:1019429-1019259 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 130
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 31, 0

Conread position: 237-358
Cow position: chr16:19976841-19976713 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 102
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 38, 0

Conread position: 250-389
Cow position: chr16:11886491-11886628 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 111
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 28, 0

Conread position: 254-389
Cow position: chr16:50934281-50934416 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 101
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 254-503
Cow position: chr16:51996906-51997160 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 188
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 22, 85

Conread position: 255-502
Cow position: chr16:50872320-50872554 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 179
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 21, 81

Conread position: 255-503
Cow position: chr16:25484220-25483975 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 177
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 29, 83

Conread position: 261-471
Cow position: chr16:935600-935804 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 145
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 16, 136

Conread position: 300-502
Cow position: chr16:3821007-3820790 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 168
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 22, 0

Show alignments to all cow chromosomes.