Cow genome map
| Conread name: | Lym1-jns23_A07.f |
| Conread position: | 1-359 |
| Cow position: | chr17:19946378-19946765 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 261 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 90, 52 |
| Conread position: | 1-472 |
| Cow position: | chr17:4677620-4677130 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 67 |
| Conread position: | 33-370 |
| Cow position: | chr17:8230754-8230394 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 20 |
| Conread position: | 53-500 |
| Cow position: | chr17:5996987-5997433 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 313 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 38, 173 |
| Conread position: | 65-359 |
| Cow position: | chr17:24129058-24128758 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 207 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 97, 90 |
| Conread position: | 86-350 |
| Cow position: | chr17:27612343-27612612 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 182 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 99, 46 |
| Conread position: | 97-503 |
| Cow position: | chr17:8279653-8280060 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 40 |
| Conread position: | 123-371 |
| Cow position: | chr17:34016945-34017192 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 177 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 144, 26 |
| Conread position: | 127-502 |
| Cow position: | chr17:20815397-20815025 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 246 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 29, 93 |
| Conread position: | 139-359 |
| Cow position: | chr17:1275530-1275307 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 157 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 24, 44 |
| Conread position: | 139-502 |
| Cow position: | chr17:17452594-17452946 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 254 |
| Alignm E-value: | 7.00649e-43 |
| Alignm gaps (pig, cow): | 53, 16 |
| Conread position: | 141-367 |
| Cow position: | chr17:4299626-4299403 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 15, 7 |
| Conread position: | 142-375 |
| Cow position: | chr17:12216064-12216305 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 142-381 |
| Cow position: | chr17:38276695-38276458 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 64, 13 |
| Conread position: | 142-396 |
| Cow position: | chr17:12219927-12220187 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 169 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 142-502 |
| Cow position: | chr17:24787015-24787396 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 261 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 125, 77 |
| Conread position: | 154-359 |
| Cow position: | chr17:24580300-24580511 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 145 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 40, 189 |
| Conread position: | 155-359 |
| Cow position: | chr17:26085030-26084823 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 148 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 51, 185 |
| Conread position: | 155-369 |
| Cow position: | chr17:13236729-13236948 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 154 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 54, 35 |
| Conread position: | 155-391 |
| Cow position: | chr17:13989179-13989418 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 39, 26 |
| Conread position: | 155-394 |
| Cow position: | chr17:24761232-24761470 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 29, 102 |
| Conread position: | 155-502 |
| Cow position: | chr17:20592226-20591889 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 253 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 66, 167 |
| Conread position: | 156-359 |
| Cow position: | chr17:37414901-37415112 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 150 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 35, 180 |
| Conread position: | 156-367 |
| Cow position: | chr17:3139835-3139630 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 146 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 186, 39 |
| Conread position: | 158-359 |
| Cow position: | chr17:3182592-3182796 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 146 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 36, 66 |
| Conread position: | 162-358 |
| Cow position: | chr17:3471400-3471210 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 136 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 162-373 |
| Cow position: | chr17:1295590-1295797 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 149 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 115, 9 |
| Conread position: | 163-502 |
| Cow position: | chr17:4064391-4064043 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 238 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 91, 27 |
| Conread position: | 164-357 |
| Cow position: | chr17:11305019-11304826 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 138 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 30, 38 |
| Conread position: | 164-443 |
| Cow position: | chr17:32554038-32554319 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 30, 38 |
| Conread position: | 167-359 |
| Cow position: | chr17:15450340-15450143 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 145 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 34, 18 |
| Conread position: | 167-503 |
| Cow position: | chr17:7559686-7560012 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 237 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 60, 14 |
| Conread position: | 168-359 |
| Cow position: | chr17:29040483-29040678 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 137 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 169-371 |
| Cow position: | chr17:27162630-27162428 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 143 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 109, 34 |
| Conread position: | 178-503 |
| Cow position: | chr17:27979145-27978823 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 235 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 13, 50 |
| Conread position: | 181-397 |
| Cow position: | chr17:23680950-23680734 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 154 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 38, 77 |
| Conread position: | 182-502 |
| Cow position: | chr17:24608820-24608489 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 48 |
| Conread position: | 184-391 |
| Cow position: | chr17:30999737-30999532 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 146 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 33, 10 |
| Conread position: | 185-375 |
| Cow position: | chr17:7760500-7760691 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 136 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 32, 71 |
| Conread position: | 186-367 |
| Cow position: | chr17:39553-39364 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 37, 22 |
| Conread position: | 186-489 |
| Cow position: | chr17:36817906-36817597 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 215 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 8, 254 |
| Conread position: | 190-372 |
| Cow position: | chr17:3095785-3095600 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 132 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 77, 30 |
| Conread position: | 190-502 |
| Cow position: | chr17:8214886-8214575 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 216 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 30, 117 |
| Conread position: | 190-504 |
| Cow position: | chr17:5745288-5745593 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 231 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 27, 60 |
| Conread position: | 193-366 |
| Cow position: | chr17:27505082-27504907 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 127 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 201-378 |
| Cow position: | chr17:11655371-11655196 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 132 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 47, 7 |
| Conread position: | 202-492 |
| Cow position: | chr17:30413989-30413683 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 203-357 |
| Cow position: | chr17:966796-966949 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 112 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 74, 17 |
| Conread position: | 203-367 |
| Cow position: | chr17:242580-242416 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 122 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 33, 17 |
| Conread position: | 203-373 |
| Cow position: | chr17:27679295-27679470 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 123 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 203-438 |
| Cow position: | chr17:9778190-9777949 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 180 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 158, 23 |
| Conread position: | 203-501 |
| Cow position: | chr17:5246840-5246553 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 200 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 73, 133 |
| Conread position: | 204-502 |
| Cow position: | chr17:31798763-31798470 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 215 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 23, 190 |
| Conread position: | 207-502 |
| Cow position: | chr17:34316764-34317050 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 204 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 68, 141 |
| Conread position: | 208-375 |
| Cow position: | chr17:3578183-3578017 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 123 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 17, 60 |
| Conread position: | 208-376 |
| Cow position: | chr17:24818192-24818024 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 21, 41 |
| Conread position: | 208-387 |
| Cow position: | chr17:1358859-1359037 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 130 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 9, 48 |
| Conread position: | 208-501 |
| Cow position: | chr17:5767856-5767569 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 205 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 15, 203 |
| Conread position: | 214-469 |
| Cow position: | chr17:8066999-8067256 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 175 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 63, 124 |
| Conread position: | 216-387 |
| Cow position: | chr17:21312878-21313041 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 128 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 61, 35 |
| Conread position: | 217-369 |
| Cow position: | chr17:34563837-34563685 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 116 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 18, 33 |
| Conread position: | 221-367 |
| Cow position: | chr17:14848600-14848743 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 107 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 221-377 |
| Cow position: | chr17:25707886-25707725 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 116 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 221-401 |
| Cow position: | chr17:14088396-14088581 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 131 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 223-400 |
| Cow position: | chr17:24587547-24587365 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 225-374 |
| Cow position: | chr17:23517245-23517394 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 109 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 52, 112 |
| Conread position: | 225-454 |
| Cow position: | chr17:15376245-15376019 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 52, 36 |
| Conread position: | 229-359 |
| Cow position: | chr17:9753710-9753579 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 104 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 229-516 |
| Cow position: | chr17:6844096-6843809 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 204 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 38, 85 |
| Conread position: | 236-381 |
| Cow position: | chr17:36786409-36786550 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 109 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 236-423 |
| Cow position: | chr17:225944-225754 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 99, 43 |
| Conread position: | 240-383 |
| Cow position: | chr17:32407190-32407333 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 112 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 36, 97 |
| Conread position: | 242-381 |
| Cow position: | chr17:23205945-23205801 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 109 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 243-502 |
| Cow position: | chr17:24294075-24293819 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 186 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 32, 56 |
| Conread position: | 256-468 |
| Cow position: | chr17:11832247-11832458 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 21, 81 |
Show alignments to all cow chromosomes.