Cow genome map
| Conread name: | Lym1-jns23_A07.f |
| Conread position: | 32-503 |
| Cow position: | chr18:31626741-31626242 (view UCSC Genome Browser custom track) |
| Alignm length: | 506 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 110, 28 |
| Conread position: | 35-356 |
| Cow position: | chr18:15859655-15859325 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 225 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 12, 191 |
| Conread position: | 88-525 |
| Cow position: | chr18:40336969-40337412 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 31 |
| Conread position: | 97-365 |
| Cow position: | chr18:248835-249094 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 179 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 9, 16 |
| Conread position: | 109-359 |
| Cow position: | chr18:28085538-28085290 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 174 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 48, 8 |
| Conread position: | 109-502 |
| Cow position: | chr18:11367787-11368184 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 272 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 47, 22 |
| Conread position: | 112-503 |
| Cow position: | chr18:10101454-10101057 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 276 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 17, 40 |
| Conread position: | 121-359 |
| Cow position: | chr18:1069865-1070098 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 125-402 |
| Cow position: | chr18:329320-329606 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 202 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 20, 54 |
| Conread position: | 128-357 |
| Cow position: | chr18:17669854-17670085 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 158 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 66, 28 |
| Conread position: | 128-373 |
| Cow position: | chr18:25002930-25003176 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 178 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 27, 110 |
| Conread position: | 133-472 |
| Cow position: | chr18:25970690-25971029 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 232 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 23, 9 |
| Conread position: | 134-377 |
| Cow position: | chr18:51298424-51298178 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 174 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 14, 148 |
| Conread position: | 138-365 |
| Cow position: | chr18:14480409-14480184 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 163 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 23, 59 |
| Conread position: | 138-424 |
| Cow position: | chr18:23424858-23424579 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 190 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 56, 75 |
| Conread position: | 143-353 |
| Cow position: | chr18:19487047-19486834 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 151 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 14, 6 |
| Conread position: | 155-373 |
| Cow position: | chr18:16842148-16842364 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 151 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 16, 36 |
| Conread position: | 155-381 |
| Cow position: | chr18:35797546-35797319 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 48, 184 |
| Conread position: | 155-383 |
| Cow position: | chr18:3073242-3073470 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 170 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 116, 70 |
| Conread position: | 155-410 |
| Cow position: | chr18:17334490-17334752 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 171 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 65, 250 |
| Conread position: | 156-371 |
| Cow position: | chr18:34052074-34052284 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 156 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 111, 41 |
| Conread position: | 156-509 |
| Cow position: | chr18:35472012-35472364 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 233 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 40, 211 |
| Conread position: | 157-375 |
| Cow position: | chr18:52869122-52868893 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 162 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 162-359 |
| Cow position: | chr18:36445345-36445147 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 146 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 114, 9 |
| Conread position: | 162-371 |
| Cow position: | chr18:22065445-22065660 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 9, 77 |
| Conread position: | 162-401 |
| Cow position: | chr18:11166886-11166652 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 171 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 115, 9 |
| Conread position: | 167-359 |
| Cow position: | chr18:19124089-19123890 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 142 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 167-389 |
| Cow position: | chr18:50700581-50700350 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 159 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 167-502 |
| Cow position: | chr18:42747502-42747181 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 226 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 37, 132 |
| Conread position: | 167-503 |
| Cow position: | chr18:4578558-4578901 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 55 |
| Conread position: | 181-457 |
| Cow position: | chr18:36186277-36186564 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 188 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 23, 231 |
| Conread position: | 182-367 |
| Cow position: | chr18:32860534-32860355 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 139 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 94, 38 |
| Conread position: | 182-373 |
| Cow position: | chr18:33606520-33606335 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 133 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 186-371 |
| Cow position: | chr18:5487135-5486954 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 186-393 |
| Cow position: | chr18:33843165-33843381 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 150 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 13, 41 |
| Conread position: | 186-502 |
| Cow position: | chr18:29224564-29224242 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 229 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 81, 20 |
| Conread position: | 187-490 |
| Cow position: | chr18:42060966-42060639 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 241 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 7, 29 |
| Conread position: | 188-502 |
| Cow position: | chr18:39115256-39115571 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 204 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 79, 11 |
| Conread position: | 188-504 |
| Cow position: | chr18:16258748-16258418 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 173, 31 |
| Conread position: | 190-503 |
| Cow position: | chr18:33275197-33274887 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 222 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 13, 133 |
| Conread position: | 192-502 |
| Cow position: | chr18:36264903-36265218 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 213 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 28, 21 |
| Conread position: | 201-502 |
| Cow position: | chr18:45576732-45577033 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 234 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 66, 120 |
| Conread position: | 203-400 |
| Cow position: | chr18:47868329-47868129 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 72, 17 |
| Conread position: | 206-359 |
| Cow position: | chr18:23669691-23669846 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 112 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 207-359 |
| Cow position: | chr18:24491209-24491364 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 119 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 17, 24 |
| Conread position: | 207-502 |
| Cow position: | chr18:33157687-33157377 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 225 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 10, 40 |
| Conread position: | 208-373 |
| Cow position: | chr18:39279125-39279297 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 208-503 |
| Cow position: | chr18:36346194-36346473 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 220 |
| Alignm E-value: | 8.99634e-43 |
| Alignm gaps (pig, cow): | 8, 22 |
| Conread position: | 209-367 |
| Cow position: | chr18:20195637-20195796 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 114 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 210-399 |
| Cow position: | chr18:20127238-20127427 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 141 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 66, 127 |
| Conread position: | 212-359 |
| Cow position: | chr18:31997340-31997196 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 110 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 10, 62 |
| Conread position: | 214-368 |
| Cow position: | chr18:26391548-26391393 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 118 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 13, 57 |
| Conread position: | 217-472 |
| Cow position: | chr18:4515885-4515632 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 184 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 59, 144 |
| Conread position: | 221-357 |
| Cow position: | chr18:36207603-36207740 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 103 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 221-359 |
| Cow position: | chr18:22121027-22121167 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 106 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 221-399 |
| Cow position: | chr18:24977499-24977674 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 132 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 56, 40 |
| Conread position: | 221-503 |
| Cow position: | chr18:21067793-21067488 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 207 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 55, 22 |
| Conread position: | 222-369 |
| Cow position: | chr18:21095106-21095248 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 109 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 222-502 |
| Cow position: | chr18:8191304-8191576 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 197 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 33, 52 |
| Conread position: | 222-502 |
| Cow position: | chr18:31082474-31082745 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 191 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 188, 49 |
| Conread position: | 222-502 |
| Cow position: | chr18:51212039-51211760 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 200 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 45, 120 |
| Conread position: | 223-502 |
| Cow position: | chr18:20215501-20215769 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 191 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 251, 38 |
| Conread position: | 228-502 |
| Cow position: | chr18:29043498-29043787 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 210 |
| Alignm E-value: | 8.99634e-43 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 228-502 |
| Cow position: | chr18:51537814-51538087 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 196 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 57, 19 |
| Conread position: | 236-502 |
| Cow position: | chr18:11680563-11680284 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 255-401 |
| Cow position: | chr18:43114100-43114247 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 116 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 256-502 |
| Cow position: | chr18:33895999-33895767 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 184 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 15, 82 |
| Conread position: | 260-397 |
| Cow position: | chr18:51271924-51272063 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 104 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 275-480 |
| Cow position: | chr18:2295005-2295215 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 142, 59 |
| Conread position: | 320-501 |
| Cow position: | chr18:10115209-10115032 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 154, 58 |
Show alignments to all cow chromosomes.