Cow genome map
| Conread name: | Lym1-jns23_A07.f |
| Conread position: | 1-236 |
| Cow position: | chr19:34683391-34683150 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 176 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 26, 54 |
| Conread position: | 1-502 |
| Cow position: | chr19:30436349-30435827 (view UCSC Genome Browser custom track) |
| Alignm length: | 539 |
| Alignm identity: | 371 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 54 |
| Conread position: | 6-223 |
| Cow position: | chr19:21854069-21854305 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 23, 49 |
| Conread position: | 22-380 |
| Cow position: | chr19:1695707-1695330 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 265 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 64, 31 |
| Conread position: | 36-222 |
| Cow position: | chr19:457216-457031 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 133 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 50, 17 |
| Conread position: | 54-359 |
| Cow position: | chr19:22508418-22508729 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 215 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 37, 92 |
| Conread position: | 54-501 |
| Cow position: | chr19:33620733-33621194 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 311 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 32, 355 |
| Conread position: | 85-513 |
| Cow position: | chr19:36602401-36601971 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 68 |
| Conread position: | 96-377 |
| Cow position: | chr19:48478985-48478687 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 194 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 112-342 |
| Cow position: | chr19:44490082-44489844 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 166 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 12, 27 |
| Conread position: | 115-373 |
| Cow position: | chr19:42465506-42465766 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 180 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 15, 41 |
| Conread position: | 119-359 |
| Cow position: | chr19:39751459-39751217 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 165 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 22, 78 |
| Conread position: | 123-358 |
| Cow position: | chr19:12170629-12170872 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 170 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 18, 95 |
| Conread position: | 123-505 |
| Cow position: | chr19:19242079-19241690 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 284 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 25, 55 |
| Conread position: | 133-358 |
| Cow position: | chr19:55236455-55236230 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 156 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 12, 24 |
| Conread position: | 133-373 |
| Cow position: | chr19:41212085-41212330 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 168 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 139-373 |
| Cow position: | chr19:38340025-38340252 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 162 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 14, 45 |
| Conread position: | 141-359 |
| Cow position: | chr19:42240331-42240555 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 152 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 16, 60 |
| Conread position: | 142-357 |
| Cow position: | chr19:3812055-3812277 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 151 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 9, 31 |
| Conread position: | 142-359 |
| Cow position: | chr19:43517189-43516972 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 77, 58 |
| Conread position: | 142-467 |
| Cow position: | chr19:33285324-33285622 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 219 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 15, 39 |
| Conread position: | 144-368 |
| Cow position: | chr19:33823272-33823044 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 51, 73 |
| Conread position: | 150-345 |
| Cow position: | chr19:16587273-16587473 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 56, 25 |
| Conread position: | 153-359 |
| Cow position: | chr19:22765558-22765353 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 151 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 18, 8 |
| Conread position: | 154-357 |
| Cow position: | chr19:18788159-18788368 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 151 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 154-503 |
| Cow position: | chr19:19661990-19661612 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 259 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 155-487 |
| Cow position: | chr19:5648714-5649043 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 230 |
| Alignm E-value: | 8.00001e-42 |
| Alignm gaps (pig, cow): | 122, 65 |
| Conread position: | 155-502 |
| Cow position: | chr19:19924656-19925024 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 260 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 50, 167 |
| Conread position: | 155-502 |
| Cow position: | chr19:39986601-39986941 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 233 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 23, 118 |
| Conread position: | 155-520 |
| Cow position: | chr19:1713200-1713561 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 230 |
| Alignm E-value: | 8.00001e-42 |
| Alignm gaps (pig, cow): | 56, 12 |
| Conread position: | 156-350 |
| Cow position: | chr19:36478837-36478640 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 138 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 47, 34 |
| Conread position: | 156-358 |
| Cow position: | chr19:8839545-8839340 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 142 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 162-373 |
| Cow position: | chr19:46918777-46918563 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 152 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 60, 9 |
| Conread position: | 167-359 |
| Cow position: | chr19:33468956-33468760 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 134 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 167-371 |
| Cow position: | chr19:31395962-31396166 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 27, 48 |
| Conread position: | 167-373 |
| Cow position: | chr19:23005429-23005643 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 146 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 167-374 |
| Cow position: | chr19:3084277-3084486 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 146 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 27, 35 |
| Conread position: | 179-455 |
| Cow position: | chr19:42092283-42092572 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 188 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 181-502 |
| Cow position: | chr19:3119500-3119163 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 227 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 94, 136 |
| Conread position: | 184-359 |
| Cow position: | chr19:31595210-31595035 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 93, 15 |
| Conread position: | 186-492 |
| Cow position: | chr19:42216019-42215705 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 222 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 17, 41 |
| Conread position: | 186-502 |
| Cow position: | chr19:35064281-35064597 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 225 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 34, 18 |
| Conread position: | 186-503 |
| Cow position: | chr19:9583225-9582920 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 222 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 13, 43 |
| Conread position: | 187-359 |
| Cow position: | chr19:33622213-33622042 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 129 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 91, 33 |
| Conread position: | 189-393 |
| Cow position: | chr19:42694900-42694690 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 145 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 191-359 |
| Cow position: | chr19:30461506-30461330 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 202-380 |
| Cow position: | chr19:37654715-37654534 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 135 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 63, 18 |
| Conread position: | 203-491 |
| Cow position: | chr19:14347903-14347602 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 213 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 74, 15 |
| Conread position: | 204-504 |
| Cow position: | chr19:43733653-43733355 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 212 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 13, 61 |
| Conread position: | 208-375 |
| Cow position: | chr19:43067075-43066902 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 124 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 208-400 |
| Cow position: | chr19:33033552-33033751 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 208-489 |
| Cow position: | chr19:7492324-7492039 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 205 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 9, 66 |
| Conread position: | 212-502 |
| Cow position: | chr19:11376522-11376819 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 5 |
| Conread position: | 213-502 |
| Cow position: | chr19:52305018-52305304 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 50 |
| Conread position: | 214-359 |
| Cow position: | chr19:31287666-31287808 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 109 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 62, 122 |
| Conread position: | 214-369 |
| Cow position: | chr19:25048718-25048876 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 121 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 12, 99 |
| Conread position: | 217-519 |
| Cow position: | chr19:2260244-2260531 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 214 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 54, 24 |
| Conread position: | 218-371 |
| Cow position: | chr19:42647186-42647338 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 118 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 58, 23 |
| Conread position: | 219-499 |
| Cow position: | chr19:24423885-24423620 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 187 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 255, 54 |
| Conread position: | 221-356 |
| Cow position: | chr19:3905430-3905564 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 103 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 55, 20 |
| Conread position: | 221-372 |
| Cow position: | chr19:32457518-32457365 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 113 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 46, 16 |
| Conread position: | 221-373 |
| Cow position: | chr19:36461652-36461804 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 116 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 55, 117 |
| Conread position: | 221-502 |
| Cow position: | chr19:42706480-42706753 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 204 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 55, 142 |
| Conread position: | 221-503 |
| Cow position: | chr19:55646909-55647181 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 200 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 47, 117 |
| Conread position: | 222-400 |
| Cow position: | chr19:11145735-11145915 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 125 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 222-498 |
| Cow position: | chr19:40250888-40250617 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 204 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 49, 180 |
| Conread position: | 232-502 |
| Cow position: | chr19:36845111-36844841 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 192 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 45, 36 |
| Conread position: | 238-353 |
| Cow position: | chr19:54225440-54225556 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 91 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 244-385 |
| Cow position: | chr19:41024075-41023939 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 110 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 37, 29 |
| Conread position: | 246-379 |
| Cow position: | chr19:9294119-9293986 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 101 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 31, 91 |
| Conread position: | 246-503 |
| Cow position: | chr19:23304646-23304891 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 180 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 31, 21 |
| Conread position: | 255-502 |
| Cow position: | chr19:43418259-43417997 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 204 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 22, 73 |
| Conread position: | 262-504 |
| Cow position: | chr19:9703996-9704241 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 172 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 281-472 |
| Cow position: | chr19:29351856-29351664 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 158 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 136, 28 |
| Conread position: | 332-482 |
| Cow position: | chr19:30052466-30052613 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 118 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 98, 62 |
| Conread position: | 340-517 |
| Cow position: | chr19:42274096-42274291 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 21, 0 |
Show alignments to all cow chromosomes.