Cow genome map

Conread name: Lym1-jns23_A07.f

Conread position: 1-346
Cow position: chr2:50052264-50052628 (view UCSC Genome Browser custom track)
Alignm length: 372
Alignm identity: 258
Alignm E-value: 7e-37
Alignm gaps (pig, cow): 32, 11

Conread position: 1-369
Cow position: chr2:39376477-39376090 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 268
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 28, 54

Conread position: 1-502
Cow position: chr2:54726215-54726739 (view UCSC Genome Browser custom track)
Alignm length: 536
Alignm identity: 356
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 26, 54

Conread position: 3-404
Cow position: chr2:85244453-85244054 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 52

Conread position: 6-373
Cow position: chr2:56077843-56077452 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 275
Alignm E-value: 9e-39
Alignm gaps (pig, cow): 23, 49

Conread position: 8-354
Cow position: chr2:1826523-1826878 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 254
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 25, 48

Conread position: 53-502
Cow position: chr2:36145083-36144647 (view UCSC Genome Browser custom track)
Alignm length: 461
Alignm identity: 305
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 51, 41

Conread position: 85-358
Cow position: chr2:52379145-52379427 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 199
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 40, 63

Conread position: 97-355
Cow position: chr2:14555734-14555999 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 173
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 13, 0

Conread position: 117-517
Cow position: chr2:71495385-71494979 (view UCSC Genome Browser custom track)
Alignm length: 412
Alignm identity: 274
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 40, 10

Conread position: 121-520
Cow position: chr2:64765170-64765555 (view UCSC Genome Browser custom track)
Alignm length: 407
Alignm identity: 264
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 31, 67

Conread position: 123-359
Cow position: chr2:27145381-27145616 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 163
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 13, 46

Conread position: 124-367
Cow position: chr2:10296085-10295842 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 168
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 33, 22

Conread position: 127-375
Cow position: chr2:6292625-6292375 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 166
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 37, 150

Conread position: 128-367
Cow position: chr2:42592432-42592202 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 166
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 71, 21

Conread position: 130-396
Cow position: chr2:14749570-14749306 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 196
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 62, 12

Conread position: 131-359
Cow position: chr2:72598774-72598552 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 160
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 25, 18

Conread position: 141-502
Cow position: chr2:17444754-17444406 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 241
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 9, 41

Conread position: 142-348
Cow position: chr2:55255344-55255557 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 149
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 14, 203

Conread position: 142-359
Cow position: chr2:68084480-68084262 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 147
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 52, 10

Conread position: 142-381
Cow position: chr2:22859675-22859911 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 164
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 52, 7

Conread position: 142-387
Cow position: chr2:69047002-69046760 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 168
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 81, 9

Conread position: 142-480
Cow position: chr2:35359760-35359437 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 233
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 19, 7

Conread position: 143-367
Cow position: chr2:46202237-46202008 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 156
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 51, 9

Conread position: 143-468
Cow position: chr2:46189132-46189454 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 229
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 51, 6

Conread position: 144-379
Cow position: chr2:63865361-63865604 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 167
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 50, 0

Conread position: 152-472
Cow position: chr2:32403021-32403338 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 219
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 13, 20

Conread position: 154-492
Cow position: chr2:73069681-73069306 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 254
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 37, 0

Conread position: 155-353
Cow position: chr2:15769536-15769736 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 146
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 39, 64

Conread position: 155-358
Cow position: chr2:41313848-41313638 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 153
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 39, 189

Conread position: 155-367
Cow position: chr2:51644971-51644763 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 152
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 121, 59

Conread position: 155-367
Cow position: chr2:76822294-76822513 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 160
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 51, 0

Conread position: 155-369
Cow position: chr2:27613066-27613288 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 150
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 51, 0

Conread position: 155-379
Cow position: chr2:31541451-31541222 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 170
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 72, 95

Conread position: 156-424
Cow position: chr2:79939491-79939752 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 186
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 111, 51

Conread position: 156-487
Cow position: chr2:42309600-42309960 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 247
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 57, 146

Conread position: 159-496
Cow position: chr2:53000460-53000139 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 239
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 29, 43

Conread position: 162-377
Cow position: chr2:22035587-22035381 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 155
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 9, 20

Conread position: 162-503
Cow position: chr2:79404041-79403723 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 232
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 115, 10

Conread position: 164-358
Cow position: chr2:42643147-42643345 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 154
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 60, 33

Conread position: 169-502
Cow position: chr2:50606488-50606141 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 106

Conread position: 184-503
Cow position: chr2:23640416-23640078 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 240
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 19, 11

Conread position: 185-374
Cow position: chr2:70708086-70708275 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 142
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 82, 12

Conread position: 186-371
Cow position: chr2:26219847-26219669 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 137
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 47, 8

Conread position: 186-503
Cow position: chr2:40427876-40428208 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 232
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 17, 292

Conread position: 187-359
Cow position: chr2:56827965-56828133 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 125
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 89, 16

Conread position: 188-487
Cow position: chr2:76110313-76110027 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 209
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 89, 9

Conread position: 188-503
Cow position: chr2:10867975-10868279 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 220
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 6, 38

Conread position: 193-359
Cow position: chr2:71120947-71120787 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 124
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 86, 11

Conread position: 193-391
Cow position: chr2:65050948-65050752 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 144
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 27, 11

Conread position: 194-359
Cow position: chr2:43123232-43123066 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 124
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 82, 26

Conread position: 198-346
Cow position: chr2:25056860-25056711 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 108
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 78, 0

Conread position: 202-373
Cow position: chr2:43718822-43718649 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 123
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 14, 0

Conread position: 202-529
Cow position: chr2:21698908-21698572 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 173

Conread position: 203-392
Cow position: chr2:13354578-13354390 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 135
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 74, 17

Conread position: 204-385
Cow position: chr2:11706317-11706131 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 131
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 74, 17

Conread position: 207-503
Cow position: chr2:31264585-31264878 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 204

Conread position: 208-367
Cow position: chr2:44065492-44065332 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 120
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 9, 130

Conread position: 208-371
Cow position: chr2:68109842-68110007 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 119
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 9, 0

Conread position: 208-374
Cow position: chr2:21355949-21356120 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 124
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 10, 134

Conread position: 208-465
Cow position: chr2:39068207-39067951 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 176
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 15, 131

Conread position: 208-500
Cow position: chr2:46745824-46745516 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 227
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 15, 25

Conread position: 214-360
Cow position: chr2:15162403-15162252 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 113
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 61, 0

Conread position: 214-386
Cow position: chr2:62685531-62685357 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 122
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 13, 0

Conread position: 217-375
Cow position: chr2:45231087-45230933 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 115
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 56, 0

Conread position: 217-387
Cow position: chr2:29546102-29546279 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 126
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 54, 0

Conread position: 218-482
Cow position: chr2:40492261-40491985 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 0

Conread position: 220-359
Cow position: chr2:36866880-36867017 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 109
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 56, 66

Conread position: 220-502
Cow position: chr2:68051069-68051356 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 191
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 49, 178

Conread position: 221-359
Cow position: chr2:62501434-62501571 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 107
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 58, 65

Conread position: 221-420
Cow position: chr2:7962371-7962170 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 145
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 34, 168

Conread position: 221-479
Cow position: chr2:32643274-32643025 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 180
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 57, 96

Conread position: 221-499
Cow position: chr2:22132452-22132736 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 201
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 55, 114

Conread position: 221-501
Cow position: chr2:26102667-26102379 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 203
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 57, 0

Conread position: 221-502
Cow position: chr2:6720747-6720457 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 146

Conread position: 221-503
Cow position: chr2:469542-469272 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 208
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 115, 52

Conread position: 221-503
Cow position: chr2:26339933-26340201 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 206
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 250, 32

Conread position: 221-503
Cow position: chr2:70933260-70933558 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 214
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 51, 11

Conread position: 221-508
Cow position: chr2:4740822-4740527 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 83

Conread position: 222-410
Cow position: chr2:36878328-36878521 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 139
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 45, 0

Conread position: 222-475
Cow position: chr2:80074-80323 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 177
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 46, 18

Conread position: 222-502
Cow position: chr2:41248453-41248155 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 202
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 55, 96

Conread position: 223-389
Cow position: chr2:29734393-29734220 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 126
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 44, 0

Conread position: 228-502
Cow position: chr2:41897344-41897075 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 194
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 40, 105

Conread position: 229-356
Cow position: chr2:74763379-74763507 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 101
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 48, 0

Conread position: 232-503
Cow position: chr2:85496442-85496723 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 200
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 9, 23

Conread position: 236-364
Cow position: chr2:52318093-52318218 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 103
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 40, 99

Conread position: 240-503
Cow position: chr2:44199020-44198755 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 177
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 163, 33

Conread position: 244-389
Cow position: chr2:62978801-62978947 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 110
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 33, 0

Conread position: 250-387
Cow position: chr2:73999205-73999068 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 106
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 319-503
Cow position: chr2:36397737-36397556 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 140
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 91, 42

Conread position: 350-503
Cow position: chr2:54882955-54882790 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 124
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 11, 0

Show alignments to all cow chromosomes.