Cow genome map
| Conread name: | Lym1-jns23_A07.f |
| Conread position: | 7-359 |
| Cow position: | chr20:4909178-4908795 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 273 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 22, 48 |
| Conread position: | 40-358 |
| Cow position: | chr20:27566129-27565812 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 218 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 51, 20 |
| Conread position: | 68-367 |
| Cow position: | chr20:21767313-21767607 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 206 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 23, 43 |
| Conread position: | 85-370 |
| Cow position: | chr20:24440513-24440211 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 204 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 57, 144 |
| Conread position: | 97-350 |
| Cow position: | chr20:15073779-15074033 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 168 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 48, 126 |
| Conread position: | 112-359 |
| Cow position: | chr20:5576814-5576558 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 180 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 44, 30 |
| Conread position: | 122-503 |
| Cow position: | chr20:27977675-27978060 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 260 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 13, 29 |
| Conread position: | 128-356 |
| Cow position: | chr20:20350963-20351196 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 160 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 29, 40 |
| Conread position: | 132-375 |
| Cow position: | chr20:14831595-14831839 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 71, 23 |
| Conread position: | 139-359 |
| Cow position: | chr20:15576873-15577101 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 157 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 6, 0 |
| Conread position: | 142-371 |
| Cow position: | chr20:6571339-6571110 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 149 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 14, 133 |
| Conread position: | 142-485 |
| Cow position: | chr20:23505836-23505491 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 242 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 52, 13 |
| Conread position: | 142-499 |
| Cow position: | chr20:12041137-12041502 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 250 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 30, 13 |
| Conread position: | 144-359 |
| Cow position: | chr20:19266163-19265947 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 156 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 50, 75 |
| Conread position: | 149-398 |
| Cow position: | chr20:4205971-4205714 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 154-385 |
| Cow position: | chr20:25017775-25018004 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 174 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 43, 153 |
| Conread position: | 155-369 |
| Cow position: | chr20:17670179-17669962 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 151 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 23, 60 |
| Conread position: | 155-503 |
| Cow position: | chr20:40511761-40512119 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 234 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 39, 184 |
| Conread position: | 156-359 |
| Cow position: | chr20:23834120-23833916 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 146 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 15, 26 |
| Conread position: | 156-371 |
| Cow position: | chr20:19238432-19238654 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 168 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 38, 187 |
| Conread position: | 156-371 |
| Cow position: | chr20:27843646-27843429 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 152 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 111, 58 |
| Conread position: | 156-501 |
| Cow position: | chr20:12420623-12420968 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 239 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 67, 246 |
| Conread position: | 156-503 |
| Cow position: | chr20:25293589-25293235 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 241 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 47, 34 |
| Conread position: | 157-374 |
| Cow position: | chr20:22920173-22920385 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 147 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 119, 54 |
| Conread position: | 158-383 |
| Cow position: | chr20:35897513-35897284 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 166 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 161-506 |
| Cow position: | chr20:10838224-10838584 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 184 |
| Conread position: | 163-502 |
| Cow position: | chr20:14735656-14735330 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 244 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 82, 8 |
| Conread position: | 167-359 |
| Cow position: | chr20:32577939-32578130 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 138 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 60, 28 |
| Conread position: | 167-387 |
| Cow position: | chr20:15148028-15148251 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 167-521 |
| Cow position: | chr20:15078648-15079011 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 235 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 27, 215 |
| Conread position: | 182-404 |
| Cow position: | chr20:20471760-20471532 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 168 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 21, 12 |
| Conread position: | 186-359 |
| Cow position: | chr20:22235281-22235104 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 186-503 |
| Cow position: | chr20:13465474-13465168 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 34 |
| Conread position: | 188-449 |
| Cow position: | chr20:20557691-20557961 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 194 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 79, 26 |
| Conread position: | 188-491 |
| Cow position: | chr20:39405721-39405426 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 227 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 79, 32 |
| Conread position: | 190-358 |
| Cow position: | chr20:3599429-3599599 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 122 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 190-359 |
| Cow position: | chr20:31311264-31311092 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 125 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 39, 18 |
| Conread position: | 197-515 |
| Cow position: | chr20:16157401-16157725 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 226 |
| Alignm E-value: | 7.9874e-44 |
| Alignm gaps (pig, cow): | 30, 306 |
| Conread position: | 201-504 |
| Cow position: | chr20:31564018-31564311 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 218 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 19, 100 |
| Conread position: | 203-359 |
| Cow position: | chr20:10818279-10818434 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 65, 16 |
| Conread position: | 203-359 |
| Cow position: | chr20:23850228-23850074 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 115 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 75, 23 |
| Conread position: | 203-367 |
| Cow position: | chr20:22959397-22959559 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 119 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 73, 17 |
| Conread position: | 203-407 |
| Cow position: | chr20:22007447-22007246 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 209-401 |
| Cow position: | chr20:37028716-37028519 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 146 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 11, 87 |
| Conread position: | 216-398 |
| Cow position: | chr20:11975175-11975356 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 147 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 120, 55 |
| Conread position: | 217-504 |
| Cow position: | chr20:13795709-13795438 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 205 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 50, 106 |
| Conread position: | 221-372 |
| Cow position: | chr20:3427083-3426934 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 112 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 114, 52 |
| Conread position: | 221-373 |
| Cow position: | chr20:7110186-7110340 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 117 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 55, 118 |
| Conread position: | 221-490 |
| Cow position: | chr20:8910849-8910586 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 187 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 205, 55 |
| Conread position: | 221-501 |
| Cow position: | chr20:10575863-10576158 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 213 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 55, 116 |
| Conread position: | 221-502 |
| Cow position: | chr20:36181246-36181528 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 205 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 54, 113 |
| Conread position: | 221-503 |
| Cow position: | chr20:19667894-19667611 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 207 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 51, 145 |
| Conread position: | 222-358 |
| Cow position: | chr20:14806814-14806677 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 102 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 222-373 |
| Cow position: | chr20:32847284-32847128 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 50, 147 |
| Conread position: | 222-483 |
| Cow position: | chr20:7442198-7442456 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 194 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 39, 55 |
| Conread position: | 228-404 |
| Cow position: | chr20:11544529-11544709 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 135 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 44, 115 |
| Conread position: | 229-487 |
| Cow position: | chr20:5407833-5408096 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 186 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 47, 94 |
| Conread position: | 238-371 |
| Cow position: | chr20:39019607-39019474 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 102 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 39, 99 |
| Conread position: | 242-401 |
| Cow position: | chr20:382219-382379 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 121 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 255-378 |
| Cow position: | chr20:16956930-16957053 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 94 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 255-503 |
| Cow position: | chr20:9006649-9006918 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 211 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 82 |
| Conread position: | 338-503 |
| Cow position: | chr20:32352825-32352663 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 125 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 72, 61 |
Show alignments to all cow chromosomes.