Cow genome map
| Conread name: | Lym1-jns23_A07.f |
| Conread position: | 1-367 |
| Cow position: | chr21:17218426-17218813 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 275 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 25, 33 |
| Conread position: | 2-359 |
| Cow position: | chr21:31763946-31764325 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 272 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 89, 45 |
| Conread position: | 5-359 |
| Cow position: | chr21:39641707-39641353 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 259 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 24, 50 |
| Conread position: | 9-355 |
| Cow position: | chr21:44292156-44292531 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 250 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 20, 46 |
| Conread position: | 28-352 |
| Cow position: | chr21:23550478-23550145 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 233 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 64, 19 |
| Conread position: | 32-378 |
| Cow position: | chr21:21919987-21919633 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 238 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 59, 28 |
| Conread position: | 96-502 |
| Cow position: | chr21:6051581-6051173 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 263 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 98, 28 |
| Conread position: | 97-399 |
| Cow position: | chr21:29002078-29002391 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 213 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 13, 54 |
| Conread position: | 109-367 |
| Cow position: | chr21:24944835-24945093 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 176 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 32, 8 |
| Conread position: | 121-359 |
| Cow position: | chr21:28993571-28993815 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 80, 30 |
| Conread position: | 124-369 |
| Cow position: | chr21:44754730-44754979 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 172 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 143, 57 |
| Conread position: | 125-372 |
| Cow position: | chr21:34390925-34391172 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 164 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 22, 152 |
| Conread position: | 129-358 |
| Cow position: | chr21:34347050-34346819 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 102, 12 |
| Conread position: | 129-369 |
| Cow position: | chr21:27229751-27229994 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 159 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 65, 13 |
| Conread position: | 133-355 |
| Cow position: | chr21:4723518-4723294 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 94, 48 |
| Conread position: | 133-359 |
| Cow position: | chr21:28997860-28998095 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 161 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 18, 23 |
| Conread position: | 133-503 |
| Cow position: | chr21:5137451-5137818 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 249 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 16, 40 |
| Conread position: | 138-359 |
| Cow position: | chr21:28512562-28512343 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 153 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 56, 11 |
| Conread position: | 142-520 |
| Cow position: | chr21:20910065-20910439 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 269 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 15, 7 |
| Conread position: | 143-502 |
| Cow position: | chr21:29485009-29484639 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 251 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 51, 55 |
| Conread position: | 144-367 |
| Cow position: | chr21:30150237-30150466 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 162 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 59, 8 |
| Conread position: | 154-359 |
| Cow position: | chr21:42053247-42053454 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 51, 99 |
| Conread position: | 155-359 |
| Cow position: | chr21:8289618-8289830 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 146 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 155-367 |
| Cow position: | chr21:23478699-23478916 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 150 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 39, 180 |
| Conread position: | 155-503 |
| Cow position: | chr21:28944347-28944717 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 156-353 |
| Cow position: | chr21:37282319-37282126 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 144 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 120, 29 |
| Conread position: | 156-359 |
| Cow position: | chr21:35997191-35996983 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 156-366 |
| Cow position: | chr21:29943019-29942810 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 71, 39 |
| Conread position: | 162-490 |
| Cow position: | chr21:24765292-24764969 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 234 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 90, 9 |
| Conread position: | 162-502 |
| Cow position: | chr21:8618279-8617927 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 234 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 115, 9 |
| Conread position: | 167-367 |
| Cow position: | chr21:30897419-30897222 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 142 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 55, 34 |
| Conread position: | 175-373 |
| Cow position: | chr21:17282705-17282500 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 140 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 178-517 |
| Cow position: | chr21:4276595-4276931 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 229 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 16, 40 |
| Conread position: | 179-376 |
| Cow position: | chr21:38482918-38482721 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 145 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 24, 113 |
| Conread position: | 182-359 |
| Cow position: | chr21:24698477-24698300 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 95, 32 |
| Conread position: | 182-373 |
| Cow position: | chr21:9416233-9416039 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 136 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 93, 19 |
| Conread position: | 184-373 |
| Cow position: | chr21:16166646-16166836 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 140 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 42, 11 |
| Conread position: | 184-389 |
| Cow position: | chr21:29247864-29248063 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 152 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 118, 20 |
| Conread position: | 185-502 |
| Cow position: | chr21:18828319-18828647 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 220 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 9, 157 |
| Conread position: | 186-359 |
| Cow position: | chr21:12973265-12973442 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 126 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 188-502 |
| Cow position: | chr21:22722492-22722816 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 229 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 6, 14 |
| Conread position: | 190-394 |
| Cow position: | chr21:5425957-5425757 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 154 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 86, 31 |
| Conread position: | 196-359 |
| Cow position: | chr21:36712170-36712009 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 121 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 80, 8 |
| Conread position: | 196-373 |
| Cow position: | chr21:19436145-19436320 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 131 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 80, 24 |
| Conread position: | 201-459 |
| Cow position: | chr21:14464549-14464299 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 182 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 59, 146 |
| Conread position: | 202-349 |
| Cow position: | chr21:33215555-33215402 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 116 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 6, 142 |
| Conread position: | 202-373 |
| Cow position: | chr21:36657538-36657370 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 123 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 12, 18 |
| Conread position: | 203-373 |
| Cow position: | chr21:19258795-19258623 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 126 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 66, 17 |
| Conread position: | 203-373 |
| Cow position: | chr21:45330636-45330811 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 72, 0 |
| Conread position: | 203-503 |
| Cow position: | chr21:2927237-2927545 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 224 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 68, 37 |
| Conread position: | 212-359 |
| Cow position: | chr21:8232779-8232926 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 108 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 64, 124 |
| Conread position: | 216-401 |
| Cow position: | chr21:45355791-45355605 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 133 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 60, 98 |
| Conread position: | 217-378 |
| Cow position: | chr21:13256759-13256596 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 126 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 217-503 |
| Cow position: | chr21:21000076-21000361 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 40 |
| Conread position: | 221-359 |
| Cow position: | chr21:16270682-16270543 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 106 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 55, 117 |
| Conread position: | 221-502 |
| Cow position: | chr21:46132027-46132305 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 191 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 6, 178 |
| Conread position: | 222-359 |
| Cow position: | chr21:14168018-14167880 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 104 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 222-502 |
| Cow position: | chr21:12801798-12802091 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 115 |
| Conread position: | 228-382 |
| Cow position: | chr21:26742645-26742798 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 113 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 144, 0 |
| Conread position: | 228-408 |
| Cow position: | chr21:24598604-24598421 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 131 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 236-359 |
| Cow position: | chr21:27089868-27089991 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 97 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 40, 24 |
| Conread position: | 248-501 |
| Cow position: | chr21:34835503-34835765 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 199 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 29, 71 |
| Conread position: | 257-502 |
| Cow position: | chr21:27614201-27613958 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 183 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 20, 88 |
| Conread position: | 259-407 |
| Cow position: | chr21:33947337-33947481 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 114 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 17, 10 |
| Conread position: | 276-500 |
| Cow position: | chr21:28955419-28955173 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 177 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 329-502 |
| Cow position: | chr21:31661924-31661752 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 145, 69 |
| Conread position: | 345-511 |
| Cow position: | chr21:10046091-10045918 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 16, 167 |
Show alignments to all cow chromosomes.