Cow genome map
| Conread name: | Lym1-jns23_A07.f |
| Conread position: | 1-268 |
| Cow position: | chr22:31555353-31555629 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 195 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 90, 13 |
| Conread position: | 7-301 |
| Cow position: | chr22:20371467-20371161 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 209 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 22, 48 |
| Conread position: | 10-455 |
| Cow position: | chr22:1028615-1028151 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 327 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 19, 45 |
| Conread position: | 32-314 |
| Cow position: | chr22:44690093-44689806 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 206 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 59, 22 |
| Conread position: | 33-359 |
| Cow position: | chr22:25259153-25259489 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 236 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 61, 20 |
| Conread position: | 78-352 |
| Cow position: | chr22:39452621-39452339 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 196 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 17, 35 |
| Conread position: | 97-377 |
| Cow position: | chr22:41245258-41244972 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 192 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 16, 225 |
| Conread position: | 115-367 |
| Cow position: | chr22:26184171-26184424 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 166 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 80, 186 |
| Conread position: | 115-502 |
| Cow position: | chr22:26822353-26821959 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 272 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 15, 52 |
| Conread position: | 126-373 |
| Cow position: | chr22:15398596-15398848 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 176 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 52, 46 |
| Conread position: | 126-503 |
| Cow position: | chr22:34886640-34886259 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 57 |
| Conread position: | 129-397 |
| Cow position: | chr22:23861173-23861437 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 200 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 65, 45 |
| Conread position: | 130-358 |
| Cow position: | chr22:2476234-2476464 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 159 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 26, 19 |
| Conread position: | 130-373 |
| Cow position: | chr22:4043905-4043663 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 163 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 21, 91 |
| Conread position: | 133-359 |
| Cow position: | chr22:10683686-10683921 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 161 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 29, 16 |
| Conread position: | 133-359 |
| Cow position: | chr22:44835619-44835386 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 164 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 23, 9 |
| Conread position: | 139-491 |
| Cow position: | chr22:15428480-15428829 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 244 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 67, 37 |
| Conread position: | 140-469 |
| Cow position: | chr22:14820595-14820912 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 216 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 8, 36 |
| Conread position: | 142-359 |
| Cow position: | chr22:4651145-4650925 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 148 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 142-489 |
| Cow position: | chr22:7979666-7979311 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 243 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 78, 14 |
| Conread position: | 143-373 |
| Cow position: | chr22:38939986-38940219 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 157 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 51, 12 |
| Conread position: | 152-401 |
| Cow position: | chr22:25341967-25341722 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 174 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 5, 20 |
| Conread position: | 154-372 |
| Cow position: | chr22:24126891-24126675 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 159 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 113, 63 |
| Conread position: | 154-377 |
| Cow position: | chr22:13187831-13187598 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 167 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 28, 70 |
| Conread position: | 155-359 |
| Cow position: | chr22:39303051-39303262 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 148 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 39, 153 |
| Conread position: | 155-380 |
| Cow position: | chr22:19787728-19787956 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 157 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 27, 103 |
| Conread position: | 155-503 |
| Cow position: | chr22:45355330-45354996 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 242 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 46, 62 |
| Conread position: | 156-359 |
| Cow position: | chr22:609987-610185 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 147 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 38, 125 |
| Conread position: | 156-359 |
| Cow position: | chr22:6583785-6583584 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 60, 34 |
| Conread position: | 158-359 |
| Cow position: | chr22:30655260-30655062 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 143 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 30, 57 |
| Conread position: | 162-502 |
| Cow position: | chr22:26658989-26658632 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 246 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 115, 9 |
| Conread position: | 167-522 |
| Cow position: | chr22:36761567-36761210 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 233 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 27, 76 |
| Conread position: | 182-401 |
| Cow position: | chr22:534417-534195 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 155 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 93, 21 |
| Conread position: | 184-503 |
| Cow position: | chr22:29574913-29575230 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 223 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 221, 10 |
| Conread position: | 190-493 |
| Cow position: | chr22:34750593-34750267 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 231 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 192-366 |
| Cow position: | chr22:28146596-28146421 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 125 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 85, 173 |
| Conread position: | 194-359 |
| Cow position: | chr22:22968145-22967975 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 124 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 32, 69 |
| Conread position: | 195-503 |
| Cow position: | chr22:14154796-14155094 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 215 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 51, 31 |
| Conread position: | 201-502 |
| Cow position: | chr22:41927438-41927734 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 211 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 26, 190 |
| Conread position: | 203-503 |
| Cow position: | chr22:13720625-13720911 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 207 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 34, 17 |
| Conread position: | 204-479 |
| Cow position: | chr22:25311641-25311917 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 205 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 15, 190 |
| Conread position: | 207-403 |
| Cow position: | chr22:16263917-16263723 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 149 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 71, 13 |
| Conread position: | 208-393 |
| Cow position: | chr22:845799-845613 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 140 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 19, 130 |
| Conread position: | 208-501 |
| Cow position: | chr22:22613008-22612705 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 211 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 15, 48 |
| Conread position: | 208-502 |
| Cow position: | chr22:6936109-6935811 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 224 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 9, 46 |
| Conread position: | 208-503 |
| Cow position: | chr22:3837331-3837616 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 216 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 19, 6 |
| Conread position: | 214-394 |
| Cow position: | chr22:6014239-6014422 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 45, 134 |
| Conread position: | 216-386 |
| Cow position: | chr22:12777694-12777866 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 123 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 61, 135 |
| Conread position: | 216-406 |
| Cow position: | chr22:9521034-9520847 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 141 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 60, 118 |
| Conread position: | 217-373 |
| Cow position: | chr22:12086492-12086648 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 113 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 67, 145 |
| Conread position: | 221-375 |
| Cow position: | chr22:15090623-15090468 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 113 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 221-502 |
| Cow position: | chr22:27791355-27791058 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 207 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 221-516 |
| Cow position: | chr22:39601153-39600860 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 205 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 57, 39 |
| Conread position: | 225-348 |
| Cow position: | chr22:22399060-22399183 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 95 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 235-401 |
| Cow position: | chr22:22039150-22038989 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 241-502 |
| Cow position: | chr22:838563-838835 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 198 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 26, 97 |
| Conread position: | 246-383 |
| Cow position: | chr22:28058186-28058321 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 110 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 31, 74 |
| Conread position: | 251-511 |
| Cow position: | chr22:19139595-19139869 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 189 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 16, 268 |
| Conread position: | 256-407 |
| Cow position: | chr22:23854828-23854676 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 112 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 104, 0 |
| Conread position: | 265-503 |
| Cow position: | chr22:23833134-23832895 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 159 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 6, 72 |
| Conread position: | 276-401 |
| Cow position: | chr22:9286565-9286690 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 103 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 113, 60 |
| Conread position: | 308-503 |
| Cow position: | chr22:17125265-17125062 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 92, 0 |
| Conread position: | 341-503 |
| Cow position: | chr22:10586192-10586357 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 118 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 60, 0 |
Show alignments to all cow chromosomes.